Molecular Epidemiology of Peste Des Petits Ruminants Virus in West Africa: Is Lineage IV Replacing Lineage II in Burkina Faso?
Abstract
:1. Introduction
2. Materials and Methods
2.1. PPR Transmission Risk Map
2.2. Sampling
2.3. RT-PCR and Sequencing
2.4. Sequences and Phylogenetic Analyses
3. Results
4. Discussion
5. Conclusions
Author Contributions
Funding
Institutional Review Board Statement
Informed Consent Statement
Data Availability Statement
Acknowledgments
Conflicts of Interest
References
- Somda, N.R.; Ilboudo, D. Pastoral Livestock Farming in Burkina Faso: Driving Economic Growth and the Hope of Well-Being; World Organisation for Animal Health: Paris, France, 2018; Volume 2, p. 5. [Google Scholar]
- Banyard, A.C.; Parida, S.; Batten, C.; Oura, C.; Kwiatek, O.; Libeau, G. Global distribution of peste des petits ruminants virus and prospects for improved diagnosis and control. J. Gen. Virol. 2010, 91, 2885–2897. [Google Scholar] [CrossRef] [PubMed]
- FAO; INERA. Étude de L’Impact Socio-Economique de la Peste des Petits Ruminants Chez les Eleveurs du Burkina Faso; Food and Agriculture Organization of the United Nations (FAO): Rome, Italy, 2019; p. 61. [Google Scholar]
- Kotchofa, P.; Rich, K.; Baltenweck, I.; Dione, M. Macroeconomic Impact Assessment of Peste des Petits Ruminants (PPR) in Ethiopia and Burkina Faso; ILRI Research Brief 102; ILRI: Nairobi, Kenya, 2021; Available online: https://hdl.handle.net/10568/114973 (accessed on 15 February 2023).
- FAO. Burkina Faso—Évaluation Pour Action—Évaluer les Capacités de Surveillance des Maladies Animales; FAO: Rome, Italy, 2020; p. 31. [Google Scholar]
- OIE. Rapport Annuel de Santé Animale de Janvier à Décembre 2018: Pays Burkina Faso; Référence OIE: 3884; OIE: Rome, Italy, 2019; 19p. [Google Scholar]
- Tounkara, K. Epidémiologie d’une Maladie Transfrontalière des Petits Ruminants (Pestes des Petits Ruminants) à Fort Impact au Mali (Mali). Ph.D. Thesis, Université de Montpellier, Montpellier, France, 2018. [Google Scholar]
- Tounkara, K.; Wiatek, O.; Niang, M.; Sidibe, C.A.K.; Sery, A.; Dakouo, M.; Salami, H.; Lo, M.M.; Ba, A.; Diop, M.; et al. Genetic evidence for transboundary circulation of peste des petits ruminants across West Africa. Front. Vet. Sci. 2019, 21, 275. [Google Scholar] [CrossRef] [PubMed]
- Dundon, W.G.; Diallo, A.; Cattoli, G. Peste des petits ruminants in Africa: A review of currently available molecular epidemiological data. Arch. Virol. 2020, 165, 2147–2163. [Google Scholar] [CrossRef] [PubMed]
- Couacy-Hymann, E.; Berete, K.; Odoom, T.; Zerbo, L.H.; Mathurin, K.Y.; Kouakou, V.K.; Doumbouya, M.I.; Balde, A.; Ababio, P.T.; Ouoba, L.B.; et al. The Spread of Peste Des Petits Ruminants Virus Lineage IV in West Africa. Animals 2023, 13, 1268. [Google Scholar] [CrossRef] [PubMed]
- Couacy-Hymann, E.; Roger, F.; Hurard, C.; Guillou, J.P.; Libeau, G.; Diallo, A. Rapid and sensitive detection of peste des petits ruminants virus by a polymerase chain reaction assay. J. Virol. Methods 2002, 100, 17–25. [Google Scholar] [CrossRef] [PubMed]
- Hall, T.A. BioEdit: A user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. In Nucleic Acids Symposium Series; Information Retrieval Ltd.: London, UK, 1999; Volume c1979. [Google Scholar]
- Nei, M.; Kumar, S. Molecular Evolution and Phylogenetics; Oxford University Press: New York, NY, USA, 2000. [Google Scholar]
- Tamura, K.; Stecher, G.; Peterson, D.; Filipski, A.; Kumar, S. MEGA6: Molecular Evolutionary Genetics Analysis version 6.0. Mol. Biol. Evol. 2013, 30, 2725–2729. [Google Scholar] [CrossRef] [PubMed]
- Ouoba-Ima, S. Caractéristiques socio-démographiques et dynamique de la transhumance des bouviers peuls de la Nouhao au Burkina Faso. VertigO 2018, 8, 2. [Google Scholar] [CrossRef]
- Guissou, T. Etude sur la Mobilité du Bétail; Rapport de Mission; Ministère des Ressources Animales: Ouagadougou, Burkina Faso, 2011; 102p. [Google Scholar]
- Bataille, A.; Salami, H.; Seck, I.; Lo, M.M.; Ba, A.; Diop, M.; Sall, B.; Faye, C.; Lo, M.; Kaba, L.; et al. Combining viral genetic and animal mobility network data to unravel peste des petits ruminants transmission dynamics in West Africa. PLoS Pathog. 2021, 17, e1009397. [Google Scholar] [CrossRef] [PubMed]
- Mantip, S.; Sigismeau, A.; Shamaki, D.; Woma, T.Y.; Kwiatek, O.; Libeau, G.; Farougou, S.; Bataille, A. Molecular epidemiology of peste des petits ruminants virus in Nigeria: An update. Transbound. Emerg. Dis. 2022, 69, 1634–1640. [Google Scholar] [CrossRef] [PubMed]
- Souley, M.M.; Issa Ibrahim, A.; Sidikou, D.; Dundon, W.G.; Cattoli, G.; Abdou, A.; Soumana, F.; Yaou, B. Molecular epidemiology of peste des petits ruminants in Niger: An update. Transbound. Emerg. Dis. 2020, 67, 1388–1392. [Google Scholar] [CrossRef] [PubMed]
- Tounkara, K.; Bataille, A.; Adombi, C.M.; Maikano, I.; Djibo, G.; Settypalli, T.B.K.; Loitsch, A.; Diallo, A.; Libeau, G. First genetic characterization of Peste des Petits Ruminants from Niger: On the advancing front of the Asian virus lineage. Transbound. Emerg. Dis. 2018, 65, 1145–1151. [Google Scholar] [CrossRef] [PubMed]
- Hodgson, S.; Moffat, K.; Hill, H.; Flannery, J.T.; Graham, S.P.; Baron, M.D.; Darpel, K.E. Comparison of the immunogenicities and cross-lineage efficacies of live attenuated peste des petits ruminants virus vaccines PPRV/Nigeria/75/1 and PPRV/Sungri/96. J. Virol. 2018, 92, e01471-18. [Google Scholar] [CrossRef] [PubMed]
- Alemu, B.; Gari, G.; Libeau, G.; Kwiatek, O.; Kidane, M.; Belayneh, R.; Siraw, B.; Wieland, B.; Asfaw, W.; Abdi, R.D. Molecular detection and phylogenetic analysis of Peste des petits ruminants virus circulating in small ruminants in eastern Amhara region, Ethiopia. BMC Vet. Res. 2019, 15, 1828. [Google Scholar] [CrossRef] [PubMed]
- Rume, V.N.; Dundon, W.G.; Belay, G.; Baziki, J.D.; Diakite, A.; Paul, A.; Tessema, Y.D.; Nwankpa, N.; Gizaw, D.; Cattoli, G.; et al. Molecular epidemiological update of peste des petits ruminants virus (PPRV) in Ethiopia. Vet. Microbiol. 2019, 235, 229–233. [Google Scholar] [CrossRef] [PubMed]
Region | Province | Location | Outbreak Events | Sample ID | Animal | Animal Type | Sample Type | Collection Date | RT-PCR_PPRV Results | Successful Sequencing | Accession Numbers |
---|---|---|---|---|---|---|---|---|---|---|---|
Plateau-Central | Kourweogo | Niou | 1 | PR20 | 1 | Goat | Eye swab | 26 October 2021 | + | No | |
PR22 | Nasal swab | + | No | ||||||||
PR24 | Mouth swab | + | No | ||||||||
PR25 | 2 | Eye swab | + | No | |||||||
PR27 | Nasal swab | - | |||||||||
PR29 | Mouth swab | + | No | ||||||||
PR31 | 3 | Eye swab | - | ||||||||
PR33 | Nasal swab | - | |||||||||
PR35 | Mouth swab | - | |||||||||
PR38 | 4 | Eye swab | - | ||||||||
PR40 | Nasal swab | - | |||||||||
PR42 | Mouth swab | - | |||||||||
PR44 | 5 | Eye swab | + | No | |||||||
PR46 | Nasal swab | - | |||||||||
PR48 | Mouth swab | - | |||||||||
PR185 | 6 | Lung | + | Yes | 100% matching with MW600928 | ||||||
PR186 | Spleen | + | Yes | ||||||||
PR187 | Pharyngeal ganglion | + | No | ||||||||
PR188 | Bronchial ganglion | + | No | ||||||||
PR189 | Mesenteric ganglion | + | No | ||||||||
Cascades | Comoe | Banfora | 2 | PR106 | 1 | Goat | Eye swab | 23 December 2021 | - | ||
PR107 | Nasal swab | + | No | ||||||||
PR108 | Mouth swab | - | |||||||||
PR109 | 2 | Eye swab | - | ||||||||
PR110 | Nasal swab | + | No | ||||||||
PR111 | Mouth swab | + | No | ||||||||
PR112 | 3 | Eye swab | + | No | |||||||
PR113 | Nasal swab | - | |||||||||
PR114 | Mouth swab | + | No | ||||||||
PR115 | 4 | Eye swab | + | No | |||||||
PR116 | Nasal swab | - | |||||||||
PR117 | Mouth swab | - | |||||||||
Cascades | Comoe | Niangoloko | 3 | PR1 | 1 | Goat | Eye swab | 8 March 2022 | - | ||
PR2 | Nasal swab | + | No | ||||||||
PR3 | Mouth swab | - | |||||||||
PR4 | 2 | Eye swab | - | ||||||||
PR5 | Nasal swab | - | |||||||||
PR6 | Mouth swab | - | |||||||||
PR7 | 3 | Eye swab | + | Yes | OR634808 | ||||||
PR8 | Nasal swab | + | No | ||||||||
PR9 | Mouth swab | + | No | ||||||||
PR10 | 4 | Eye swab | - | ||||||||
PR11 | Nasal swab | - | |||||||||
PR12 | Mouth swab | - | |||||||||
PR13 | 5 | Eye swab | - | ||||||||
PR14 | Nasal swab | - | |||||||||
PR15 | Mouth swab | - | |||||||||
PR16 | 6 | Eye swab | - | ||||||||
PR17 | Nasal swab | + | No | ||||||||
PR18 | Mouth swab | - | |||||||||
Centre Ouest | Boulkiemde | Koudougou | 4 | PR49 | 1 | Goat | Eye swab | 15 March 2022 | + | No | |
PR51 | Nasal swab | - | |||||||||
PR53 | Mouth swab | + | Yes | OR634804 | |||||||
PR54 | 2 | Eye swab | + | Yes | OR634806 | ||||||
PR55 | 3 | Nasal swab | + | Yes | OR634800 | ||||||
PR56 | 4 | Nasal swab | + | Yes | OR634805 | ||||||
PR57 | 5 | Nasal swab | + | Yes | OR634801 | ||||||
PR58 | 6 | Mouth swab | - | ||||||||
PR59 | Mouth swab | + | Yes | OR634803 | |||||||
Cascades | Comoe | Banfora | 5 | PR118 | 1 | Goat | Eye swab | 7 May 2022 | - | ||
PR119 | Nasal swab | - | |||||||||
PR120 | Mouth swab | - | |||||||||
PR121 | 2 | Eye swab | + | No | |||||||
PR122 | Nasal swab | + | No | ||||||||
PR123 | Mouth swab | + | No | ||||||||
PR124 | 3 | Eye swab | + | Yes | OR634809 | ||||||
PR125 | Nasal swab | + | No | ||||||||
PR126 | Mouth swab | + | No | ||||||||
PR127 | 4 | Eye swab | + | Yes | OR634809 | ||||||
PR128 | Nasal swab | + | No | ||||||||
PR129 | 5 | Mouth swab | + | No | |||||||
PR130 | Eye swab | + | Yes | OR634802 | |||||||
PR131 | 6 | Nasal swab | + | Yes | OR634807 | ||||||
PR132 | Mouth swab | + | No |
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Biguezoton, A.S.; Ilboudo, G.S.; Wieland, B.; Sawadogo, R.W.-Y.; Dah, F.F.; Sidibe, C.A.K.; Zoungrana, A.; Okoth, E.; Dione, M. Molecular Epidemiology of Peste Des Petits Ruminants Virus in West Africa: Is Lineage IV Replacing Lineage II in Burkina Faso? Viruses 2024, 16, 244. https://doi.org/10.3390/v16020244
Biguezoton AS, Ilboudo GS, Wieland B, Sawadogo RW-Y, Dah FF, Sidibe CAK, Zoungrana A, Okoth E, Dione M. Molecular Epidemiology of Peste Des Petits Ruminants Virus in West Africa: Is Lineage IV Replacing Lineage II in Burkina Faso? Viruses. 2024; 16(2):244. https://doi.org/10.3390/v16020244
Chicago/Turabian StyleBiguezoton, Abel S., Guy Sidwatta Ilboudo, Barbara Wieland, Rahinata W-Y. Sawadogo, Fairou F. Dah, Cheick A. K. Sidibe, Adrien Zoungrana, Edward Okoth, and Michel Dione. 2024. "Molecular Epidemiology of Peste Des Petits Ruminants Virus in West Africa: Is Lineage IV Replacing Lineage II in Burkina Faso?" Viruses 16, no. 2: 244. https://doi.org/10.3390/v16020244
APA StyleBiguezoton, A. S., Ilboudo, G. S., Wieland, B., Sawadogo, R. W.-Y., Dah, F. F., Sidibe, C. A. K., Zoungrana, A., Okoth, E., & Dione, M. (2024). Molecular Epidemiology of Peste Des Petits Ruminants Virus in West Africa: Is Lineage IV Replacing Lineage II in Burkina Faso? Viruses, 16(2), 244. https://doi.org/10.3390/v16020244