Conserved and Diverse Traits of Adhesion Devices from Siphoviridae Recognizing Proteinaceous or Saccharidic Receptors
Abstract
:1. Introduction
2. Modules Forming the Siphoviridae Tail Tip
2.1. The TMP-Dit-Tal Triad
2.2. RBPs and Ancillary Proteins
3. Architecture of Siphophage Adhesion Devices Targeting Proteinaceous Receptors
3.1. Gram-Negative Host
3.1.1. Phage lambda
3.1.2. Phage T5
3.2. Gram-Positive Host
3.2.1. Phage SPP1
3.2.2. Lactococcal Phages c2 and bIL67
4. Architecture of Siphophage Adhesion Devices Targeting Hosts’ Surface Polysaccharides
4.1. Binding-Ready Baseplate
4.1.1. Lactococcal Phage TP901-1
4.1.2. Phage Tuc2009
4.1.3. Listerial Phages A118 and PSA
4.1.4. Staphylococcal Phage 80α
4.2. Activatable Baseplates
4.2.1. Lactococcus lactis Phage p2
4.2.2. Lactococcus lactis Phage 1358
4.2.3. Other Phages
5. Perspectives
Conflicts of Interest
References
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Query | Target (PDB ID, Source) | Probability (%) | E-Value | Identity (%) | Query Residue Range (total) | Target Residue Range (Total) |
---|---|---|---|---|---|---|
lambda gpM (Dit) | 6F2M, T5 | 94 | 0.42 | 11 | 4–77 (109) | 12–85 (217) |
lambda gpJ (Tal) | 3D37, N. meningitidis MC58 | 95.9 | 0.18 | 14 | 327–499 (1132) | 143–320 (381) |
3CDD, Shewanella MuSo2 | 95.8 | 0.18 | 10 | 326–499 | 146–324 | |
1WRU, phage Mu | 94.1 | 0.69 | 16 | 326–499 | 140–318 | |
3GS9, L. monocytogenes A118 | 85.0 | 12 | 8 | 334–499 | 149–307 | |
5UTK, Receptor extracellular region (fibronectin III repeats) | 98.7 | 1.6e-6 | 11 | 570–811 | 64–297 | |
T5 pb3 (Tal) | 3D37, N. meningitidis MC58 | 97.3 | 0.012 | 11 | 529–725 (949) | 143–350 (381) |
3CDD, Shewanella MuSo2 | 97.1 | 0.011 | 12 | 528–709 | 146–339 (361) | |
1WRU, phage Mu | 96.8 | 0.026 | 15 | 529–716 | 141–339 (379) | |
3GS9, Listeria | 91.3 | 4.3 | 15 | 533–708 | 146–320 (342) | |
5E53, adhesion molecule (fibronectin III repeats) | 98.6 | 1.9e-5 | 13 | 690–949 | 133–295 | |
SPP1 gp21 (Tal) | 3GS9, L. monocytogenes A118 | 99.9 | 4.9e-25 | 12 | 3–404 (1111) | 1–141 (342) |
3CDD, Shewanella MuSo2 | 98.9 | 4.1e-7 | 11 | 1–382 | 2–340 | |
3D37, N. meningitidis MC58 | 98.9 | 7.7e-7 | 10 | 1–381 | 2–336 | |
1WRU, phage Mu | 98.9 | 9.2e-7 | 11 | 2–381 | 1–334 | |
5E53, adhesion molecule (fibronectin III repeats) | 96.4 | 0.011 | 14 | 422–518 | 204–301 |
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Goulet, A.; Spinelli, S.; Mahony, J.; Cambillau, C. Conserved and Diverse Traits of Adhesion Devices from Siphoviridae Recognizing Proteinaceous or Saccharidic Receptors. Viruses 2020, 12, 512. https://doi.org/10.3390/v12050512
Goulet A, Spinelli S, Mahony J, Cambillau C. Conserved and Diverse Traits of Adhesion Devices from Siphoviridae Recognizing Proteinaceous or Saccharidic Receptors. Viruses. 2020; 12(5):512. https://doi.org/10.3390/v12050512
Chicago/Turabian StyleGoulet, Adeline, Silvia Spinelli, Jennifer Mahony, and Christian Cambillau. 2020. "Conserved and Diverse Traits of Adhesion Devices from Siphoviridae Recognizing Proteinaceous or Saccharidic Receptors" Viruses 12, no. 5: 512. https://doi.org/10.3390/v12050512