Taxonomic and Bioactivity Characterizations of Mameliella alba Strain LZ-28 Isolated from Highly Toxic Marine Dinoflagellate Alexandrium catenella LZT09
Abstract
:1. Introduction
2. Results and Discussion
2.1. Characterization of the Composition of the Bacterial Community of Algal Strain LZT09
2.2. Phenotypic and Biochemical Characteristics of Bacterial Strain LZ-28
2.3. Phylogenetic Analysis Based on 16S rRNA Gene Sequences
2.4. Genomic Features of the Selected M. alba Strains
2.5. Phylogenomic Characterization of Bacterial Strain LZ-28
2.6. Comparison of the Core- and Pan-Genomic Profiles among the Selected M. alba Strains
2.7. Comparison of the Functional Classes of Predicted Genes among the Selected M. alba Strains
2.8. Growth-Promoting Effects of Bacterial Strain LZ-28 and Algal Strain LZT09
2.9. Optimization of Bacterial Growth and EPS Accumulation
2.10. Bioflocculanting-Activity Evaluation and Correlation Analysis
3. Materials and Methods
3.1. Algal and Bacterial Strains and Culture
3.2. PCR Amplification, 16S rRNA Sequencing, and Data Analysis
3.3. Morpho-Physiological and Biochemical Characterizations
3.4. Analysis of Fatty Acid Profiles
3.5. Phylogenetic Analysis Based on the 16S rRNA Gene Sequences
3.6. Phylogenomic Calculations and UBCG Tree Construction
3.7. Pan-Genome Analysis
3.8. Comparative Analysis of Functional Genes
3.9. Bacterial Growth and EPS-Accumulation Analysis
3.10. Characterization of the Monosaccharides of EPSs
3.11. Evaluation of Bioflocculanting and MGP Bioactivities
Supplementary Materials
Author Contributions
Funding
Data Availability Statement
Conflicts of Interest
References
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Characteristic | LZ-28 | JLT354-WT | KD53 | L6M1-5 | JL351 | F15 |
---|---|---|---|---|---|---|
Isolation source | Marine dinoflagellate | Seawater | Marine diatom | Deep-sea sediment | Surface seawater | Deep-sea sediment |
Colony color | Light-Yellow | White | Yellow | Yellow–white | Yellow | Cream–yellow |
Cell size (µm) | (0.7–1.0) × (2.0–2.9) | (0.7–0.9) × (2.0–3.2) | (0.5–1.0) × (2.2–2.9) | (0.7–0.8) × (1.0–2.0) | (0.5–0.8) × (0.7–1.5) | (0.7–1.2) × (1.6–3.4) |
NaCl range (optimum, w/v, %) | 1.0–10.0 (2.5) | 1.0–10.0 (1.0–3.0) | 1.0–6.0 (3.0) | 0.5–15.0 (3.0–5.0) | 0.5–9.0 (1.0–4.0) | 0–10.0 (3.5) |
pH range (optimum) | 5.0–10.0 (7.0) | 6.0–9.0 (8.0) | 6.0–9.5 (7.5–8.0) | 5.0–10.5 (7.0) | 7.0–10.0 (8.0) | 6.0–11.0 (7.0–8.0) |
Temperature range (optimum, °C) | 15–40 (25–28) | 10–30 (25) | 16–37 (28) | 10–41 (28–30) | 15–40 (30) | 4–50 (35–37) |
Oxidase activity | + | + | + | − | + | + |
Catalase activity | + | + | − | + | + | + |
Poly-β-hydroxybutyrate | + | + | − | − | + | − |
API 20E test | ||||||
Citrate utilization | − | − | − | w | w | + |
Gelatinase | + | + | − | + | + | + |
API 20NE test | ||||||
Reduction of nitrite | + | + | + | + | − | + |
Gelatin hydrolysis | + | + | − | + | + | + |
Phenylacetic acid utilization | − | + | + | + | + | − |
Polar lipid profile a | PC, DPG, PE | AL | PC, PE, AL | PE, AL | PC, DPG, PE, AL, GL | PC, PE, GL |
Fatty acid profile b | ||||||
C16:0 | 3.2 | 5.7 | 5.3 | 4.8 | 5.3 | 4.5 |
C17:0 | 1.1 | tr | 1.0 | tr | tr | ND |
C18:0 | 7 | 9.2 | 11.1 | 10 | 8.6 | 8.5 |
C12:1 3OH | 4.7 | 3.3 | 2.8 | 3.1 | 3.2 | 3.1 |
C17:1ω8c | − | tr | tr | tr | tr | 1 |
C18:1ω7c 11-methyl | 10.8 | 6.6 | 7.9 | 7.5 | 6.1 | 5.4 |
C19:0 cyclo ω8c | 3.2 | 5.7 | 5.3 | 4.8 | 5.3 | 4.5 |
Summed feature 8 | 65.5 | 70.8 | 69.5 | 70.7 | 72.5 | 74.3 |
16S rRNA gene similarity (%) | − | 99.70 | 99.77 | 99.92 | 99.62 | 99.40 |
DNA G+C content (mol%) c | 64.9 | 65.2 | 65.0 | 65.0 | 65.1 | 65.0 |
ANI value of LZ-28 (%) | − | 98.0 | 98.2 | 98.0 | 98.0 | 97.9 |
AAI value of LZ-28 (%) | − | 98.4 | 98.1 | 98.1 | 98.5 | 98.2 |
dDDH value of LZ-28 (%) | − | 84.3 | 83.5 | 83.9 | 84.3 | 83.1 |
Strain | Isolation Source and Year | Genome Size (Mb) | G+C Content (mol%) a | Protein | CDS b | GenBank Accession No. |
---|---|---|---|---|---|---|
LZ-28 | Toxic marine dinoflagellate Alexandrium catenella LZT09, East China Sea, 2018 | 5.66 | 64.94 | 5502 | 5497 | JAANYX000000000 |
KD53 | Marine diatom Phaeodactylum tricornutum, Xiamen, China, 2013 | 5.42 | 65.10 | 5278 | 5223 | NIWC00000000 |
Ep20 | Marine dinoflagellate, Symbiodinium sp., 2015 | 5.51 | 65.04 | 5345 | 5343 | QAEF00000000 |
PBVC088 | Toxic marine dinoflagellate, Pyrodinium bahamense var. Compressum, 2012 | 5.51 | 64.96 | 5689 | 5632 | LZNT00000000 |
UMTAT08 | Marine dinoflagellate Alexandrium tamiyavanichii AcMS01, 1997 | 5.84 | 65.01 | 5761 | 5719 | JSUQ00000000 |
JLT354-WT | Seawater, South China Sea, 2006 | 5.26 | 65.21 | 5126 | 5132 | FMZI00000000 |
JL351 | Surface seawater (111°00′ E, 20°59′ N), South China Sea, 2006 | 5.42 | 65.15 | 5290 | 5275 | NIWA00000000 |
KU6B c | Surface seawater, Boso Peninsula, Japan (34.9° N, 134.89° E), 2011 | 5.83 | 64.95 | 6009 | 4886 | AP022337-022340 |
L6M1-5 | Deep-sea sediment (2835 m), South Atlantic Ocean (15.18° S, 13.88° W), 2011 | 5.90 | 64.96 | 5821 | 5783 | NIVZ00000000 |
F15 | Deep-sea sediment (7118 m, 141°59.7′ E, 10°59.7′ N), Western Pacific Ocean, 2015 | 5.79 | 64.95 | 5694 | 5589 | NIWB00000000 |
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Ren, C.-Z.; Gao, H.-M.; Dai, J.; Zhu, W.-Z.; Xu, F.-F.; Ye, Y.; Zhang, X.-L.; Yang, Q. Taxonomic and Bioactivity Characterizations of Mameliella alba Strain LZ-28 Isolated from Highly Toxic Marine Dinoflagellate Alexandrium catenella LZT09. Mar. Drugs 2022, 20, 321. https://doi.org/10.3390/md20050321
Ren C-Z, Gao H-M, Dai J, Zhu W-Z, Xu F-F, Ye Y, Zhang X-L, Yang Q. Taxonomic and Bioactivity Characterizations of Mameliella alba Strain LZ-28 Isolated from Highly Toxic Marine Dinoflagellate Alexandrium catenella LZT09. Marine Drugs. 2022; 20(5):321. https://doi.org/10.3390/md20050321
Chicago/Turabian StyleRen, Cheng-Zhe, Hui-Min Gao, Jun Dai, Wen-Zhuo Zhu, Fei-Fei Xu, Yun Ye, Xiao-Ling Zhang, and Qiao Yang. 2022. "Taxonomic and Bioactivity Characterizations of Mameliella alba Strain LZ-28 Isolated from Highly Toxic Marine Dinoflagellate Alexandrium catenella LZT09" Marine Drugs 20, no. 5: 321. https://doi.org/10.3390/md20050321
APA StyleRen, C. -Z., Gao, H. -M., Dai, J., Zhu, W. -Z., Xu, F. -F., Ye, Y., Zhang, X. -L., & Yang, Q. (2022). Taxonomic and Bioactivity Characterizations of Mameliella alba Strain LZ-28 Isolated from Highly Toxic Marine Dinoflagellate Alexandrium catenella LZT09. Marine Drugs, 20(5), 321. https://doi.org/10.3390/md20050321