Harnessing AACR Project GENIE to Define the Molecular Features of Desmoplastic Small Round Cell Tumor
Abstract
1. Introduction
2. Materials and Methods
3. Results
3.1. Demographic Data for Desmoplastic Small Round Cell Tumor
3.2. Frequent Somatic Mutations
3.3. Frequent Copy Number Alterations
3.4. Notable Mutations by Sex and Race
3.5. Co-Occurring and Mutually Exclusive Genetic Alterations
3.6. Genomic Alterations Among Primary and Metastatic DSRCT
4. Discussion
5. Limitations
6. Conclusions
Author Contributions
Funding
Institutional Review Board Statement
Informed Consent Statement
Data Availability Statement
Conflicts of Interest
Abbreviations
| DSRCT | Desmoplastic Small Round Cell Tumor |
| AACR GENIE | American Association for Cancer Research Genomics Evidence Neoplasia Information Exchange |
| UICC | Union for International Cancer Control |
| CNA | Copy Number Alteration |
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| Demographics | Category | n (%) |
|---|---|---|
| Sex | Male | 117 (82.4%) |
| Female | 22 (15.5%) | |
| Unknown | 3 (2.1%) | |
| Age category | >18 years old | 118 (58.4%) |
| ≤18 years old | 84 (41.6%) | |
| Ethnicity | Non-Hispanic | 107 (75.4%) |
| Unknown/Not Collected | 9 (6.3%) | |
| Hispanic | 23 (16.2%) | |
| Not collected | 3 (2.1%) | |
| Race | Asian | 12 (8.5) |
| White | 84 (59.2) | |
| Black | 27 (19%) | |
| Other | 7 (4.9) | |
| Unknown | 9 (6.3) | |
| Sample Type | Primary | 95 (47%) |
| Metastasis | 97 (48%) | |
| Other | 10 (5.0%) |
| Gene Mutation | n (%) |
|---|---|
| ARID1A | 16 (7.9) |
| TP53 | 5 (2.5) |
| ATM | 7 (3.5) |
| TERT | 6 (3.0) |
| FGFR4 | 5 (2.5) |
| EP300 | 4 (2.0) |
| ALK | 3 (1.5) |
| NOTCH1 | 4 (2.0) |
| KMT2C | 4 (2.0) |
| MTOR | 4 (2.0) |
| Gene | n (%) | |
|---|---|---|
| Homozygous Deletion | CRLF2 | 7 (3.6) |
| PTEN | 5 (2.6) | |
| FAT1 | 5 (2.7) | |
| CDKN2A | 4 (2.1) | |
| CDKN2B | 4 (2.1) | |
| Amplification | TMPRSS2 | 4 (2.1) |
| ERG | 3 (1.6) | |
| ICOSLG | 3 (1.7) | |
| U2AF1 | 3 (1.6) | |
| ELF3 | 3 (2.0) |
| Gene (Chi-Squared) | Male, n | Female, n | p Value |
|---|---|---|---|
| FL1 | 0 | 1 | p = 5.78 × 10−3 |
| NSD1 | 2 | 3 | p = 0.0142 |
| RUNX1 | 0 | 2 | p = 0.0157 |
| STAG2 | 1 | 2 | p = 0.0434 |
| WT1 | 145 | 17 | p = 0.0489 |
| Gene (Chi-Squared) | Non-White, n | White, n | p Value |
|---|---|---|---|
| FLI1 | 1 | 0 | p = 8.33 × 10−3 |
| KDM2B | 1 | 0 | p = 0.0165 |
| MAGED1 | 1 | 0 | p = 0.0165 |
| MKI67 | 1 | 0 | p = 0.0165 |
| PCLO | 1 | 0 | p = 0.0165 |
| TRAF5 | 1 | 0 | p = 0.0165 |
| AKAP9 | 0 | 1 | p = 0.0323 |
| ANKRD11 | 3 | 0 | p = 0.0344 |
| KMT2C | 4 | 1 | p = 0.0411 |
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Kolluru, S.; Horio, N.; Torbenson, E.; Hsia, B.; Tauseef, A. Harnessing AACR Project GENIE to Define the Molecular Features of Desmoplastic Small Round Cell Tumor. Curr. Issues Mol. Biol. 2026, 48, 85. https://doi.org/10.3390/cimb48010085
Kolluru S, Horio N, Torbenson E, Hsia B, Tauseef A. Harnessing AACR Project GENIE to Define the Molecular Features of Desmoplastic Small Round Cell Tumor. Current Issues in Molecular Biology. 2026; 48(1):85. https://doi.org/10.3390/cimb48010085
Chicago/Turabian StyleKolluru, Sowmya, Nicole Horio, Elijah Torbenson, Beau Hsia, and Abubakar Tauseef. 2026. "Harnessing AACR Project GENIE to Define the Molecular Features of Desmoplastic Small Round Cell Tumor" Current Issues in Molecular Biology 48, no. 1: 85. https://doi.org/10.3390/cimb48010085
APA StyleKolluru, S., Horio, N., Torbenson, E., Hsia, B., & Tauseef, A. (2026). Harnessing AACR Project GENIE to Define the Molecular Features of Desmoplastic Small Round Cell Tumor. Current Issues in Molecular Biology, 48(1), 85. https://doi.org/10.3390/cimb48010085

