Mechanistic Networks, Cellular Specificity, and Therapeutic Opportunities of Ferroptosis in Ulcerative Colitis
Abstract
1. Introduction
2. Core Evidence That Ferroptosis Occurs in Colitis
3. Cell-Type Specificity in Colitis-Associated Ferroptosis
4. Mechanistic Networks Driving Ferroptosis in Colitis
5. Epigenetic and Post-Transcriptional Regulation of Ferroptosis in Colitis
6. Crosstalk with Microbiota, Metabolites, and Mucosal Healing
7. Therapeutic Strategies Targeting Ferroptosis in Colitis
8. Major Unresolved Problems and Future Directions
8.1. Bioavailability and Delivery Constraints of Anti-Ferroptotic Interventions
8.2. Clinical Validation Pathways for Hub Gene Biomarkers
8.3. The Ferroptosis Paradox: Balancing Acute Cytoprotection with Onco-Surveillance
9. Conclusions
Funding
Institutional Review Board Statement
Informed Consent Statement
Data Availability Statement
Conflicts of Interest
Abbreviations
| 1,25(OH)2D3 | 1,25-Dihydroxyvitamin D3 |
| 4-HNE | 4-Hydroxynonenal |
| 5-ASA | 5-Aminosalicylic Acid |
| Ac-SOD2 | Acetylated Superoxide Dismutase 2 |
| ACSF2 | Acyl-CoA Synthetase Family Member 2 |
| ACSL4 | Acyl-CoA Synthetase Long Chain Family Member 4 |
| AIEC | Adherent-Invasive *Escherichia coli* |
| ALOX15 | Arachidonate 15-Lipoxygenase |
| AMPK | AMP-Activated Protein Kinase |
| BAP1 | BRCA1 Associated Protein 1 |
| CA9 | Carbonic Anhydrase 9 |
| Caco-2 | Human Colon Adenocarcinoma Cell Line |
| CBS | Cystathionine Beta-Synthase |
| COX-2 | Cyclooxygenase-2 |
| cPLA2 | Cytosolic Phospholipase A2 |
| CREB | cAMP Response Element-Binding Protein |
| C/EBPβ | CCAAT/Enhancer-Binding Protein Beta |
| DAMPs | Damage-Associated Molecular Patterns |
| DCA | Deoxycholic Acid |
| DFO | Deferoxamine |
| DMT1 | Divalent Metal Transporter 1 |
| DPP4 | Dipeptidyl Peptidase 4 |
| DSS | Dextran Sulfate Sodium |
| ELISA | Enzyme-Linked Immunosorbent Assay |
| ERK | Extracellular Signal-Regulated Kinase |
| Fe | Iron |
| Fe-S | Iron–Sulfur |
| Fe2+ | Ferrous Iron |
| Fer-1 | Ferrostatin-1 |
| FTH1 | Ferritin Heavy Chain 1 |
| GFER | Growth Factor, Augmenter of Liver Regeneration (Erv1-like) |
| GPX4 | Glutathione Peroxidase 4 |
| GSDMD | Gasdermin D |
| GSH | Glutathione |
| GZMA | Granzyme A |
| HIF-1α | Hypoxia-Inducible Factor-1 Alpha |
| HIF-2α | Hypoxia-Inducible Factor-2 Alpha |
| HMGB1 | High Mobility Group Box 1 |
| HO-1 | Heme Oxygenase-1 |
| hUC-MSC | Human Umbilical Cord-Mesenchymal Stem Cell |
| IBD | Inflammatory Bowel Disease |
| IEC | Intestinal Epithelial Cell |
| IGF2BP2 | Insulin-Like Growth Factor 2 mRNA-Binding Protein 2 |
| ILC3s | Group 3 Innate Lymphoid Cells |
| INSIG2 | Insulin Induced Gene 2 |
| IRF7 | Interferon Regulatory Factor 7 |
| JAK | Janus Kinase |
| Keap1 | Kelch-Like ECH-Associated Protein 1 |
| KLF6 | Krüppel-Like Factor 6 |
| LCN2 | Lipocalin 2 |
| Lip-1 | Liproxstatin-1 |
| M1 | Type 1 Macrophage (Classically Activated Macrophage) |
| M2 | Type 2 Macrophage (Alternatively Activated Macrophage) |
| m6A | N6-Methyladenosine |
| MDA | Malondialdehyde |
| METTL3 | Methyltransferase-Like 3 |
| METTL14 | Methyltransferase-Like 14 |
| MFN2 | Mitofusin 2 |
| miR-129-5p | microRNA-129-5p |
| miR-375-3p | microRNA-375-3p |
| MLKL | Mixed Lineage Kinase Domain-Like Protein |
| mRNA | Messenger RNA |
| mtROS | Mitochondrial Reactive Oxygen Species |
| NCM460 | Normal Colonic Mucosa 460 (Cell Line) |
| NF-κB | Nuclear Factor-Kappa B |
| NKp46+ | Natural Killer Cell Protein 46 Positive |
| NLRP3 | NOD-Like Receptor Family Pyrin Domain Containing 3 |
| Nrf2 | Nuclear Factor Erythroid 2-Related Factor 2 |
| p53 | Tumor Protein 53 |
| PAK6 | p21-Activated Kinase 6 |
| Panx1 | Pannexin 1 |
| PCBP1 | Poly(rC)-Binding Protein 1 |
| PCR | Polymerase Chain Reaction |
| PDE4 | Phosphodiesterase 4 |
| PGC-1α | Peroxisome Proliferator-Activated Receptor Gamma Coactivator 1-Alpha |
| Piezo1 | Piezo-type Mechanosensitive Ion Channel Component 1 |
| PKA | Protein Kinase A |
| PPARG/PPARγ | Peroxisome Proliferator-Activated Receptor Gamma |
| PTGS2 | Prostaglandin-Endoperoxide Synthase 2 |
| PUFA | Polyunsaturated Fatty Acid |
| RBM3 | RNA Binding Motif Protein 3 |
| RBMS1 | RNA Binding Motif Single Stranded Interacting Protein 1 |
| RIPK1 | Receptor-Interacting Protein Kinase 1 |
| RIPK3 | Receptor-Interacting Protein Kinase 3 |
| RNA | Ribonucleic Acid |
| ROS | Reactive Oxygen Species |
| RSL3 | RAS Selective Lethal 3 |
| RXRA | Retinoid X Receptor Alpha |
| SCD1 | Stearoyl-CoA Desaturase 1 |
| SCFA | Short-Chain Fatty Acid |
| SIRT3 | Sirtuin 3 |
| SLC6A14 | Solute Carrier Family 6 Member 14 |
| SLC7A11 | Solute Carrier Family 7 Member 11 |
| SLC11A2 | Solute Carrier Family 11 Member 2 |
| SLC37A2 | Solute Carrier Family 37 Member 2 |
| SOD2 | Superoxide Dismutase 2 |
| SREBP1 | Sterol Regulatory Element-Binding Protein 1 |
| STAT3 | Signal Transducer and Activator of Transcription 3 |
| STIM1 | Stromal Interaction Molecule 1 |
| System Xc− | Cystine/Glutamate Antiporter |
| TCM | Traditional Chinese Medicine |
| TEM | Transmission Electron Microscopy |
| TF | Transferrin |
| TLR | Toll-Like Receptor |
| TNF-α | Tumor Necrosis Factor Alpha |
| UAF1 | Ubiquitin-Associated Factor 1 |
| UC | Ulcerative Colitis |
| VDR | Vitamin D Receptor |
| WTAP | Wilms’ Tumor 1-Associating Protein |
| YTHDC1 | YTH Domain Containing 1 |
| YTHDC2 | YTH Domain Containing 2 |
| YTHDF1 | YTH Domain Family 1 |
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| Evidence Level/Model Category | Principal Cell Type/Compartment | Major Ferroptosis-Related Finding | Source |
|---|---|---|---|
| Tier I: Human Clinical & Translational Validation | Intestinal epithelial cells | Identified the presence and involvement of ferroptosis directly in human UC mucosal biopsy tissue. | [13] |
| Colon epithelial cells | Positioned patient-derived colonic epithelial ferroptosis as a highly viable therapeutic target for UC. | [15] | |
| Patient colonic tissue | Demonstrated a severe pathogenetic reduction in mucosal VDR and SIRT3 expressions in clinical UC samples. | [19] | |
| Tier II: In Vivo Animal Model Systems | Colonic epithelium/whole colon (DSS mice) | Showed that DSS induces a pro-ferroptotic change that can be reversed by canonical Fer-1 or Lip-1. | [14] |
| Colonic tissue (DSS mice) | Demonstrated that iron chelation with Deferasirox reduces mucosal Fe2+, suppresses ferroptosis markers, and remodels microflora. | [21] | |
| DSS-induced colitis in mice | Validated that systemic Vitamin D administration attenuates disease severity by actively dampening ACSL4 expression. | [40] | |
| Tier III: Traditional In Vitro Cell Line Platforms | Human Caco-2 adenocarcinoma cells | Established that Astragalus polysaccharide blocks RSL3- or erastin-induced ferroptotic injury via Nrf2/HO-1. | [35] |
| DSS-treated human NCM460 cells | Proved that the m6A reader IGF2BP2 binds and directly stabilizes GPX4 mRNA to suppress lipid peroxidation. | [41] | |
| Challenged intestinal cell lines | Revealed that a severe genetic deficiency in YTHDC2 stabilizes RBMS1 transcripts to drive epithelial ferroptosis. | [42] | |
| Tier IV: Advanced Physiologic Models | Mouse- and patient-derived organoids | Utilized complex 3D organoid architectures to demonstrate that Gegen Qinlian decoction limits epithelial cell death via GPX4 protection. | [43] |
| Intestinal organoid systems | Proved that the Zhilining formula blocks ALOX15-mediated lipid peroxidation to preserve epithelial barrier continuity. | [44] | |
| Tier V: High-Resolution Landscape | Single-cell transcriptomic analyses | Dissected multicellular signatures to prove enterocyte-lineage cells are heavily enriched for ferroptosis, gated by GFER-iron handling. | [45] |
| Mechanistic Module | Core Ferroptotic Consequence in Colitis | Typical Evidence/Readouts in Colitis Studies | Representative Studies |
|---|---|---|---|
| Antioxidant defense failure | Weakens lipid peroxide detoxification and lowers the ferroptosis threshold in intestinal epithelial cells | GPX4↓, GSH↓, MDA/4-HNE↑, lipid ROS↑, worsened epithelial injury | [14,22,56,57] |
| Lipid remodeling and ferroptotic susceptibility | Increases incorporation of peroxidation-prone phospholipids and promotes membrane lipid damage | ACSL4↑, PTGS2/COX-2↑, oxidized lipids↑, epithelial injury↑ | [18,38,40,68] |
| overload and iron transport dysregulation | Expands the labile iron pool and accelerates iron-dependent lipid peroxidation | Total iron↑, Fe2+↑, ROS↑, MDA↑, GPX4↓, FTH/TF abnormalities | [20,21,37] |
| Mitochondrial redox amplification | Amplifies oxidative injury and reinforces lipid peroxidation once antioxidant capacity declines | mtROS↑, SIRT3↓, Ac-SOD2↑, ACSL4↑, GPX4↓, shrunken mitochondria with reduced cristae | [19] |
| Inflammatory signaling control of ferroptotic sensitivity | Links cytokine/inflammatory signaling to ferroptotic commitment and epithelial injury | Altered STAT3 activity with parallel changes in ferroptosis markers and colitis severity | [16] |
| Transporter- and kinase-linked epithelial regulation | Couples nutrient transport and stress-responsive signaling to epithelial ferroptosis | Increased ferroptosis with pathway activation; reduced injury after pathway suppression | [17] |
| Epitranscriptomic and post-transcriptional control | Alters transcript stability of anti-ferroptotic or pro-ferroptotic genes, thereby shifting ferroptotic threshold upstream of protein execution | GPX4 mRNA stability↑ or ↓, ACSL4 mRNA stability↑, ROS/MDA/iron changes, colitis severity changes | [41,68,69] |
| Energy-sensing and metabolic restraint | Suppresses ferroptosis in DSS colitis, likely by improving stress adaptation and redox balance | Reduced ferroptosis-associated injury together with improved colitis phenotypes | [64] |
| Microbiota-metabolite crosstalk | Microbial ecology and metabolite output modify epithelial redox balance and ferroptosis burden | Butyrate-associated Nrf2/GPX4 support and barrier improvement; iron overload linked to ferroptosis and microbiota disruption | [21,22] |
| Emerging ferroptosis-related regulators not yet fully integrated | Suggests that additional lipid/iron-metabolic regulators may connect ferroptosis with immune pathways such as TLR and NF-κB signaling | ACSF2 downregulation in UC models; Fer-1 reversibility in cell models; association with immune-related pathways | [30] |
| Co-Existing Death Pathway | Primary Shared Nodes | Mechanistic Bridge to Ferroptosis | Impact on Mucosal Barrier Collapse |
|---|---|---|---|
| Apoptosis | Mitochondrial ROS, Cytochrome c, Caspase-3, tumor protein 53 (p53) signaling. | GPX4 depletion and lipid ROS distort mitochondrial membranes, inducing cytochrome c leakage to trigger apoptosis. Conversely, p53 activation can suppress SLC7A11 transcription, directly lowering the ferroptotic threshold. | Initiates orderly enterocyte extrusion; however, extensive concurrent apoptosis and ferroptosis overwhelm epithelial renewal capacity, leading to focal denudation of the mucosa. |
| Necroptosis | TNF-α, RIPK1, RIPK3, MLKL membrane pore formation. | TNF-α signaling simultaneously induces MLKL phosphorylation and upregulates ACSL4 expression. MLKL-driven membrane porous breakdown disrupts ionic homeostasis, accelerating calcium-dependent lipid peroxidation. | Triggers lytic epithelial desquamation and rapid paracellular permeability, opening structural gaps for luminal bacterial translocation. |
| Pyroptosis | NOD-like receptor family pyrin domain containing 3 (NLRP3) inflammasome, Caspase-1, GSDMD, HMGB1 release. | Ferroptotic lipid peroxides act as intrinsic danger signals that activate the NLRP3 inflammasome. Meanwhile, GSDMD pores induce calcium influx that drives cPLA2-dependent lipid remodeling, amplifying ferroptosis susceptibility. | Massive release of intracellular contents and inflammatory DAMPs into the lamina propria, inducing a feed-forward cytokine storm that destroys the tight-junction matrix. |
| Evidence Classification | Representative Intervention | Primary Anti-Ferroptotic Axis/Targeted Node | Representative Source |
|---|---|---|---|
| Class A: Direct/Canonical Rescue Evidence | Fer-1/Lip-1 | Direct lipid peroxyl radical scavenging; complete block of membrane lipid peroxidation and GPX4 destruction. | [14,89] |
| Deferasirox | Depletion of the mucosal labile iron pool; direct blockade of Fenton reaction propagation. | [21] | |
| Butyrate | Direct activation of the Nrf2/GPX4 defense pathway to block lipid peroxidation. | [22] | |
| Vitamin D/1,25(OH)2D3 | Direct transcriptional suppression of ACSL4 expression and protection of the SIRT3-SOD2 mitochondrial core. | [19,40] | |
| Selenium | Obligate cofactor delivery to directly induce intracellular GPX4 synthesis and antioxidant gating. | [90] | |
| Class B: Multi-Target Contextual Evidence | Astragalus polysaccharide | Up-regulation of Nrf2/HO-1 signaling cascades to decrease oxidative cell loss. | [35] |
| Lizhong decoction | Protection of enterocytes via the broader Nrf2/SLC7A11/GPX4 pathway. | [57] | |
| Buddlejasaponin IVb | Coordinated Nrf2/GPX4 pathway upregulation and correction of gut microbial dysbiosis. | [82] | |
| Gancao Xiexin decoction | Associated suppression of inflammatory cytokine-driven ACSL4 upregulation. | [38] | |
| Palmatine/Isorhamnetin | Concurrent iron chelation and Nrf2/HO-1 antioxidant loop activation. | [93,96] | |
| Class C: Emerging Bioengineered Platforms | hUC-MSC Exosomes (miR-129-5p) | Targeted delivery of regulatory RNA to selectively post-transcriptionally suppress ACSL4 expression. | [99] |
| Endometrial Regenerative Cell Exosomes | Downregulation of intestine ferroptosis markers. | [100] | |
| M2 Polarization Nanoparticles | Coordinated biomimetic delivery to inhibit epithelial ferroptosis while promoting M2 macrophage tissue repair. | [101] |
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Yi, J.-L.; Zhu, J.-X.; Huang, W.-F.; Yi, L.-T. Mechanistic Networks, Cellular Specificity, and Therapeutic Opportunities of Ferroptosis in Ulcerative Colitis. Pharmaceuticals 2026, 19, 858. https://doi.org/10.3390/ph19060858
Yi J-L, Zhu J-X, Huang W-F, Yi L-T. Mechanistic Networks, Cellular Specificity, and Therapeutic Opportunities of Ferroptosis in Ulcerative Colitis. Pharmaceuticals. 2026; 19(6):858. https://doi.org/10.3390/ph19060858
Chicago/Turabian StyleYi, Jia-Le, Ji-Xiao Zhu, Wei-Feng Huang, and Li-Tao Yi. 2026. "Mechanistic Networks, Cellular Specificity, and Therapeutic Opportunities of Ferroptosis in Ulcerative Colitis" Pharmaceuticals 19, no. 6: 858. https://doi.org/10.3390/ph19060858
APA StyleYi, J.-L., Zhu, J.-X., Huang, W.-F., & Yi, L.-T. (2026). Mechanistic Networks, Cellular Specificity, and Therapeutic Opportunities of Ferroptosis in Ulcerative Colitis. Pharmaceuticals, 19(6), 858. https://doi.org/10.3390/ph19060858

