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Article

Synthesis and Structure-Affinity Relationships of Receptor Ligands with 1,3-Dioxane Structure

Institut für Pharmazeutische und Medizinische Chemie, Universität Münster, Corrensstraße 48, D-48149 Münster, Germany
*
Author to whom correspondence should be addressed.
Pharmaceuticals 2025, 18(9), 1300; https://doi.org/10.3390/ph18091300
Submission received: 28 July 2025 / Revised: 19 August 2025 / Accepted: 27 August 2025 / Published: 29 August 2025
(This article belongs to the Section Medicinal Chemistry)

Abstract

Background/Objectives: Ligands blocking σ1 receptors or NMDA receptors show promising pharmacological properties, such as analgesia or neuroprotection. It had been shown that depending on the stereochemistry and substitution pattern, 1,3-dioxnaes can selectively interact with either σ1 receptors or the phencyclidine binding site of NMDA receptors. Herein, systematic modifications of homologous aminobutyl substituted 1,3-dioxanes were conducted in order to identify ligands selectively addressing σ receptors or NMDA receptors. Methods: The first step of the synthesis, i.e., the acetalization of benzaldehyde (7a) or propiophenone (7b) with pentane-1,3,5-triol (6), determined the relative configuration of the envisaged 1,3-dioxanes bearing 4-aminobutyl substituents in 4-position. Multi-step homologation of ethanols 8 provided various primary, secondary and tertiary amines 14, 1619, and 2427. The affinity towards σ1 and σ2 receptors as well as the PCP and ifenprodil binding sites of the NMDA receptor was systematically evaluated in radioligand receptor binding studies. Results: Only the primary amines 14b and 24b derived from propiophenone interacted moderately with the PCP binding site of the NMDA receptor. Within this class of compounds, the N-benzylamines 17 and 18 showed the highest σ1 affinity with high selectivity over the PCP binding site and at least preference over the σ2 receptor. The benzylamine 17a (Ki1) = 31 nM, LLE = 6.19) and the pyrrolidine 19a (Ki1) = 154 nM, LLE = 6.72) represent the most promising σ1 ligands of this compound series, when taking the lipophilicity and receptor selectivity into account. Conclusions: Both compounds showed medium metabolic stability in vitro rendering them promising candidates for further studies.

1. Introduction

Different activity profiles resulting from treatment of non-dependent and morphine-dependent chronic spinal dogs with different benzomorphans led to sub-differentiation of the opioid receptor into three subtypes, which were termed according to their prototypical ligands: µ-opioid receptor (morphine), κ-opioid receptor (ketocyclazocine) and σ-opioid receptor (SKF-10,047, N-allylnormetazocine) [1]. Later it was shown that the effects caused by racemic SKF-10,047 could not be antagonized by the opioid antagonist naloxone [2]. Therefore, the σ receptor was removed from the class of opioid receptors. Due to the similar activity profiles of SKF-10,047 and phencyclidine (PCP, 1-(1-phenylcyclohexyl)piperidine), the σ receptor was regarded to be identical with the PCP binding site of the N-methyl-d-aspartate (NMDA) receptor [3]. However, this hypothesis was also discarded, since the σ ligand haloperidol did not interact with the PCP binding site of the NMDA receptor. Moreover, the distribution of both binding sites in the central nervous system differs from each other [4]. Today, σ receptors are accepted as unique class of receptors containing σ1 and σ2 subtypes [4].
The confusion regarding the classification of σ1 receptors resulted from the use of racemic SKF-10,047 in the original experiments. Dextrorotatory benzomorphans, such as (+)-SKF-10,047 (N-allylnormetazocine) and (+)-pentazocine bind with high affinity and selectivity at σ1 receptors, whereas levorotatory benzomorphans, e.g., (−)-SKF-10,047 and (−)-pentazocine interact with opioid receptors and the PCP binding site of NMDA receptors. Small substituents at the N-atom (e.g., H or CH3) lead to a preference for the PCP binding site over opioid receptors [5].
In 2016, the first X-ray crystal structures of the σ1 receptor in complex with atypical ligands 4-IBP and PD144418 were reported [6]. In contrast to previous reports [7], these structures consisted of only one transmembrane helix, a short extracellular N-terminal part and a large cytosolic carboxy terminal domain containing the ligand binding site. The X-ray crystal structures of the σ1 receptor in complex with prototypical agonist (+)-pentazocine and prototypical antagonists NE-1001 and haloperidol appeared in 2018 [8]. These structures are characterized by an important ionic interaction between glutamate172 of the σ1 receptor and an ammonium moiety (protonated amino group) of the ligands. The human σ2 receptor has not yet been crystalized. However, it has been identified as the transmembrane protein 97 (TMEM97) located in the endoplasmic reticulum [9].
σ1 Receptors are located in various regions of the central nervous system. Among other neuropsychiatric and neurodegenerative diseases [10,11], σ1 receptors are involved in depression and neuropathic pain. σ1 Receptor knock-out mice showed an inconspicuous phenotype, but in the forced swimming test a depression-like behavior was observed [12,13]. Several antidepressants from different compound classes (e.g., fluoxetine, fluvoxamine, imipramine) interact strongly with the σ1 receptor [14]. In PET studies with the selective σ1 receptor ligand [18F]fluspidine, modified σ1 receptor expression in the central nervous system of patients suffering from major depression was observed [15]. Additionally, σ1 receptor antagonists represent promising candidates for the treatment of neuropathic pain, a special form of pain, which is difficult to treat with standard analgesic drugs. In the capsaicin mouse model of neuropathic pain [16], attenuation of pain-like effects was shown with σ1 receptor knock-out mice and with mice treated with σ1 receptor antagonists [17,18]. Recently, the analgesic drug, S1RA antagonizing σ1 receptors completed successfully phase II clinical trials for the treatment of neuropathic pain [17]. In general, σ1 ligands triggering pain-relieving effects in the capsaicin mouse model of neuropathic pain are regarded as σ1 antagonists [17].
In addition to the presence of σ1 receptors in the central nervous system, expression in different organs in the periphery (e.g., lung, liver, kidney, retina, and heart [19]) and several human tumors (e.g., breast, lung, prostate tumors) has been reported. A correlation between high σ1 receptor expression and strong metastasis of tumors (high aggressiveness) was observed resulting in an unfavorable prognosis [7,20]. Antagonists at σ1 receptors are able to reduce proliferation and survival of tumors [20].
In a previous study, we have investigated 1,3-dioxanes 1 bearing an aminoethyl moiety in 4-position. The racemic benzylamine 1 exhibited high σ1 affinity (Ki = 19 nM) and high selectivity over related σ2 receptors and the PCP binding site of the NMDA receptor. In the capsaicin assay of neuropathic pain, 1 showed 70% analgesic activity at the very low dose of 0.25 mg/kg body weight [21,22]. The (2S,4R)-configured enantiomer represents the eutomer (Ki = 6.0 nM) [22] (Figure 1).
The corresponding propiophenone derivative 2b with a benzylamino moiety displayed comparable σ1 affinity (Ki = 27 nM), whereas the corresponding primary amine 2a exhibited only low σ1 affinity (Ki = 955 nM). Instead of σ1 affinity, high affinity at the PCP binding site of the NMDA receptor was observed for 2a (Ki = 19 nM) [22]. At the PCP binding site, the (R,R)-configured enantiomer represents the eutomer with a Ki value of 13 nM [22]. Replacement of the primary NH2 moiety of 2 by a benzylamino group brought back the high σ1 affinity (Ki = 27 nM [21] (Figure 1).
Replacement of one O-atom of the 1,3-dioxane ring by a CH2 moiety led to tetrahydropyran derivative 3. Both enantiomers (2S,6R)-3 and (2R,6S)-3 revealed high σ1 affinity (Ki = 1.6 nM and 6.4 nM, respectively), were analgesically active in the mouse capsaicin assay and inhibited the growth of the human prostate cancer cell line DU145 [23] (Figure 1).
Homologation of ethan-1-amine 1 by one CH2 moiety provided propan-1-amine 4 with remarkable but reduced σ1 affinity (Ki = 164 nM). However, the selectivity over σ2 receptors and the PCP binding site of the NMDA receptor was retained. Even the corresponding primary amine (NH2 instead of NHBn) did not interact with the PCP binding site [21] (Figure 1).
This work was devoted to the next homologous butan-1-amines 5 bearing the 1,3-dioxane ring at 4-position. (Figure 1) At 2-position of the dioxane ring, the substitution pattern of the lead compounds 14 (benzaldehyde and propiophenone acetals) was preferred. In α-position of the amino moiety, an additional phenyl ring should be introduced. Finally, the amino group should be provided with various substituents. A series of differently substituted ligands should be prepared and pharmacologically evaluated in receptor binding studies.

2. Results and Discussion

2.1. Synthesis

The synthesis of butan-1-amines 5 started with acetalization of benzaldehyde (7a) or propiophenone (7b) with pentane-1,3,5-triol (6). Both reactions led to the thermodynamically favored diastereomer with an equatorially oriented 2-hydroxyethyl moiety in 4-position. With benzaldehyde, the cis-configured 1,3-dioxane 8a was formed with the phenyl moiety adopting the energetically favored equatorial orientation. In case of propiophenone, an axial orientation of the ethyl moiety at 2-position would sterically interact with the 1,3-dioxane ring resulting in 8b with equatorial orientation of the ethyl and axial orientation of the phenyl moiety [21,22]. All reaction products derived from 8a and 8b exhibit the same relative configuration as their corresponding parent primary alcohols 8a and 8b (Scheme 1).
Swern oxidation of the primary alcohols 8 led to aldehydes 9, which reacted in a Wittig reaction with stabilized P-Ylides to afford the α,β-unsaturated esters 10a and 10b. As stabilized P-Ylides Ph3P=CHCO2R were employed, (E)-configured α,β-unsaturated esters (E)-10 were produced predominantly (ratio (E):(Z) = 10:1 for 10a and 15:1 for 10b, respectively). For the hydrogenation of the α,β-unsaturated esters 10 ammonium formate and Pd/C were used to give the butanoates 11 in >90% yield. LiBH4 reduction in the esters 11 provided the primary alcohols 12. The primary amines 14 were obtained by Mitsunobu reaction of the primary alcohols 12 with Zn(N3)2·2 pyridine, PPh3 and diisopropyl azodicarboxylate (DIAD) and subsequent hydrogenation of the resulting azides 13. The secondary amines 16 and 17 and the tertiary amines 18 and 19 were prepared by nucleophilic substitution of the mesylates 15 with the corresponding primary and secondary amines. The tertiary amine 18b was synthesized by reductive methylation of the secondary amine 17b with formalin and NaBH(OAc)3 (Scheme 1).
For the synthesis of 1-phenyl substituted butan-1-amines 2427, an aldol addition of acetophenone to the aldehydes 9 was performed to afford the β-hydroxyketones 20. Dehydration of β-hydroxyketones 20 with CH3SO2Cl and NEt3 led to the α,β-unsaturated ketones 21. As for the α,β-unsaturated esters 10, (E)-configured diastereomers were formed predominantly. Since hydrogenation of α,β-unsaturated ketones 21 with H2 and Pd/C led to various side products, the double bond of 21 was saturated by a transfer hydrogenation using ammonium formate (NH4HCO2) and Pd/C to obtain the ketones 22a and 22b in 82% and 75% yield, respectively. After conversion of ketone 22a into its oxime 23a, LiAlH4 reduction yielded the primary amine 24a. Reductive amination of ketones 22a,b with NH4OAc and NaBH3CN led to the primary amines 24a and 24b. For the reductive amination with primary and secondary amines, NaBH(OAc)3 was employed providing the methylamines 25, benzylamines 26 and pyrrolidines 27 (Scheme 2).

2.2. Receptor Affinity

The affinity towards receptors was determined using tritium-labeled radioligands competing with the novel ligands for their binding sites. A low amount of bound radioactivity indicates high affinity of the test compounds to the respective receptor. The radioligands [3H](+)-pentazocine and [3H]di-o-tolylguanidine (in the presence of an excess of (+)-pentazocine) were used in the σ1 and σ2 assay, respectively. Membrane preparations from guinea pig brain (σ1 assay) and rat liver (σ2 assay) served as receptor material [24]. In addition to σ receptor affinity, the affinities towards the PCP [22,25] and ifenprodil binding sites [26] of the NMDA receptors were recorded. In Table 1, the receptor affinities of butan-1-amines 14, 1619 and 2427 containing the 1,3-dioxane ring are summarized together with affinity data of some reference compounds.
The σ1 affinity of the linear primary amines 14a and 14b is rather low as they do not compete considerably with the radioligand [3H](+)-pentazocine at a concentration of 1 µM (IC50 > 1 µM). For the linear butan-1-amines 1619, a common trend was observed. Methylamines 16 showed lowest σ1 affinity, followed by the pyrrolidines 19 and the benzylamines 17. An additional methyl moiety at the benzylamino moiety resulted in low nanomolar σ1 affinity of compounds 18a (Ki = 6.3 nM) and 18b (Ki = 8.7 nM). This observation is in good agreement with the pharmacophore models of σ1 receptor ligands postulating two lipophilic regions connected by a basic amino moiety [27]. The benzyl moiety at the N-atom of 17 and 18 represents the postulated second hydrophobic region. In this series of ligands, butanamines derived from propiophenone (b-series) display slightly higher σ1 affinity than their analogs derived from benzaldehyde (a-series). The tertiary N-benzyl-N-methylamines 18a and 18b are regarded as equipotent.
Butan-1-amines 2427 already contains the second hydrophobic region in form of the additional phenyl moiety in 1-position of the side chain (compare σ1 pharmacophore models [27]). Due to the presence of this phenyl moiety, ligands 25 and 27 with small N-substituents show higher σ1 affinity than the corresponding ligands 16 and 19 with the same N-substituents. However, the introduction of an additional benzyl moiety at the amino group (26a, 26b) appears to be unfavorable with respect to σ1 affinity. As observed for the linear butan-1-amines 1519, propiophenone derivatives 25b27b exhibit higher σ1 affinity than the analogous benzaldehyde derivatives 25a27a.
Homologation of the benzaldehyde-derived ethanamine 1 (Ki = 19 nM, Figure 1) and the corresponding propiophenone-derived ethanamine 2b (Ki = 27 nM) [22] led to butanamines 17a (Ki = 31 nM) and 17b (Ki = 14 nM) with comparable σ1 affinity.
With exception of the propiophenone derivatives 19b and 24b all compounds reported herein exhibit selectivity or at least preference for the σ1 receptor over the σ2 subtype. The most potent σ1 ligands 18a and 18b show 5-fold and 3-fold σ12 receptor selectivity. The highest σ12 selectivity was observed for the benzylamine 17a (approx. 7-fold).
For a short period of time, the σ1 receptor was regarded to be identical with the PCP binding site at the NMDA receptor. This hypothesis resulted from similar ligand profiles of both receptors. Therefore, the affinity of the ligands towards the PCP binding site was recorded using [3H](+)-MK-801 as competitive radioligand and pig brain preparations as receptor material [22,25]. A considerable affinity towards the PCP binding site of the NMDA receptor was detected only for the primary amines 14b (Ki = 731 nM) and 24b (Ki = 524 nM) derived from propiophenone. This observation correlates well with the high PCP affinity of the 1,3-dioxolane derivative etoxadrol (28, Ki = 22 nM) [22] (Figure S1) and the 1,3-dioxane 2a (Ki = 13 nM (R,R)-enantiomer) [22]. (Figure 1) The moderate PCP affinity of the benzylamine 17b (Ki = 569 nM) appears to be unexpected.
Due to similar pharmacophore models of σ ligands and ligands for the ifenprodil binding site of the NMDA receptor, the affinity towards the ifenprodil binding site was recorded in competitive receptor binding studies with tritium-labeled ifenprodil and membrane preparations from L(tk-) cells overexpressing NMDA receptors with GluN2B subunit [26]. The most potent σ1 ligands 17a,b and 18a,b showed affinity towards this binding site as well, but at least a preference for σ1 receptors. Whereas the benzaldehyde-derived 1,3-dioxanes 17a and 18a demonstrated high >30- and >40-fold selectivity for the σ1 receptor against the ifenprodil binding site, the propiophenone derivatives 17b and 18b showed comparable affinities towards both receptors.
As detailed in the introduction, σ receptors were originally classified as opioid receptor subtype. Therefore, the opioid receptor affinity of the high-affinity σ1 ligands 17 and 18 was also recorded in receptor binding studies [28]. (Table S1, Supporting Information) The benzaldehyde-derived benzylamine 17a (Ki1) = 31 nM) showed high selectivity for the σ1 receptor over µ- and κ-opioid receptors, but only 9-fold selectivity over δ-opioid receptors. The more potent propiophenone-derived benzylamine 17b and both tertiary amines 18a and 18b exhibited high selectivity over all three opioid receptor subtypes.

2.3. Lipophilicity and Metabolic Stability (In Vitro) of Selected σ1 Receptor Ligands

A balanced lipophilicity is crucial for the pharmacokinetics and pharmacodynamics of drugs. As measure for the lipophilicity, the logD7.4 value of selected compounds was recorded using the recently developed micro-shake flask method. In this method, a compound was distributed between a MOPS buffer pH 7.4 and n-octanol and the amount of compound in the buffer layer was determined by MS analysis [29] (Table 2).
The logD7.4 values of propiophenone derivatives (b-series) is approx. 1.2 log units higher than the logD7.4 value of benzaldehyde derivatives (a-series). The introduction of a methyl moiety increased the logD7.4 value by approx. 1 log unit (compare 17 and 18). Replacement of the benzylamino moiety by a pyrrolidino moiety reduced the logD7.4 value by approx. 1.2 log units (compare 17 and 19). The additional phenyl moiety in the side chain of 27 increased the logD7.4 value by approx. 2 log units (compare 19 and 27).
The recorded logD7.4 values were used to calculate the ligand-lipophilicity efficiency (LLE) [30] of the σ1 ligands. The LLE value combines the affinity or activity of a ligand with its lipophilicity to avoid the development of very lipophilic biologically active compounds. It is assumed that compounds with high LLE values have favorable pharmacokinetics and high druglikeness [30]. Due to their high polarity, the benzylamine 17a and the pyrrolidine 19a show the highest LLE values despite their only moderate σ1 receptor affinity of 31 nM (17a) and 154 nM (19a). Although the tertiary amines 18a and 18b exhibit low nanomolar σ1 affinity, their high lipophilicity reduced their LLE values to 5.71 and 4.52.
In order to get an impression on the metabolic stability, selected butanamines were incubated with mouse liver microsomes and NADPH. After an incubation period of 90 min, the amount of unchanged parent compound was determined by LC-MS [29]. The metabolic stability of the investigated butanamines 1719 and 27 is very similar, approx. 50–60% of the parent compounds were found unchanged after 90 min. As exceptions, the pyrrolidine 27a was metabolically more stable (76% intact after 90 min) and the tertiary amine 18b showed faster biotransformation (36% intact after 90 min).

3. Materials and Materials

3.1. Synthetic Procedures

  • 2-(cis-2-Phenyl-1,3-dioxan-4-yl)ethanol (8a).
Pharmaceuticals 18 01300 i007
Pentane-1,3,5-triol (6, 1.69 g, 14 mmol), benzaldehyde (7a, 3.5 mL, 35 mmol) and p-toluenesulfonic acid (75 mg) were dissolved in CH2Cl2 abs. (60 mL) and heated to reflux for 16 h, using an inverse Dean-Stark apparatus. For workup, the reaction mixture was washed with saturated aqueous solution of NaHCO3 (3 × 20 mL), dried (K2CO3) and the solvent was removed in vacuo. The residue was purified by flash column chromatography (Ø 6 cm, cyclohexane:thyl acetate = 1:1, length 20 cm, fraction 65 mL, Rf = 0.28). Colorless oil, yield 2.27 g (78%). C12H16O3, Mr = 208.3. MS (EI): m/z [%] = 208 (M, 33), 207 (M-H, 100), 177 (M-CH2OH, 13), 105 (PhCO, 47), 77 (Ph, 42). IR (neat): ͠ν [cm−1] = 3420 (O-H), 3066, 3034 (Ar-H), 2947, 2857 (C-H), 1098 (C-O-C), 749, 697 (arom. monosubst.). 1H NMR (CDCl3): δ [ppm] = 1.54 (dtd, J = 13.1/2.5/1.4 Hz, 1H, 5-Heq), 1.79–1.99 (m, 3H, CH2-CH2-OH and 5-Hax), 2.11 (dd, J = 6.1/4.7 Hz, 1H, CH2-OH), 3.79–3.90 (m, 2H, CH2-OH), 3.99 (td, J = 11.7/2.6 Hz, 1H, 6-Hax), 4.09–4.16 (m, 1H, 4-Hax), 4.28 (ddd, J = 11.4/5.0/1.1 Hz, 1H, 6-Heq), 5.54 (s, 1H, 2-Hax), 7.30–7.40 (m, 3H, Ar-H), 7.46–7.48 (m, 2H, Ar-H).HPLC (method MeOH): purity 96.8%, tR = 12.27 min.
  • 2-(trans-2-Ethyl-2-phenyl-1,3-dioxan-4-yl)ethanol (8b).
Pharmaceuticals 18 01300 i008
Pentane-1,3,5-triol (6, 2.01 g, 16.6 mmol), propiophenone (7b 4.4 mL, 33.2 mmol) and p-toluenesulfonic acid (75 mg) were dissolved in toluene (90 mL) and heated to reflux for 1.5 h, using a Dean-Stark apparatus filled with molecular sieves 4 Å. For workup, the reaction mixture was washed with saturated aqueous solution of NaHCO3 (3 × 30 mL) and with brine (1 × 30 mL) and dried (K2CO3). The solvent was removed in vacuo, and the residue was purified by flash column chromatography (Ø 8 cm, cyclohexane:ethyl acetate = 7:3, length 17 cm, fraction 65 mL, Rf = 0.24). Colorless oil, yield 3.51 g (90%). C14H20O3, Mr = 236.3. MS (EI): m/z [%] = 237 (M + H, 24), 207 (M-CH3-CH2, 100), 105 (Ph-CO, 67). IR (neat): ͠ν [cm−1] = 3420 (O-H), 2926, 2875 (C-H), 756, 703 (arom. monosubst.). 1H NMR (CDCl3): δ [ppm] = 0.80 (t, J = 7.5 Hz, 3 H, diox-CH2-CH3), 1.25–1.30 (m, 1 H, 5-Heq), 1.69–1.89 (m, 3 H, 5-Hax, CH2-CH2-OH), 1.75 (q, J = 7.5 Hz, 2 H, diox-CH2-CH3), 2.58 (s, 1 H, O-H), 3.81 (td, J = 12.0/2.5 Hz, 1 H, 6-Hax), 3.87–3.91 (m, 3 H, 6-Heq, CH2-OH), 3.93–4.00 (m, 1 H, 4-Hax), 7.29–7.42 (m, 5 H, Ar-H). HPLC (method ACN): purity 99.9%, tR = 17.54 min.
  • 2-(cis-2-Phenyl-1,3-dioxan-4-yl)acetaldehyde (9a).
Pharmaceuticals 18 01300 i009
Under N2 atmosphere, oxalyl chloride (0.51 mL, 6 mmol) was dissolved in CH2Cl2 abs. (25 mL) and cooled down to −78 °C. At this temperature, a solution of DMSO (0.85 mL, 12 mmol) in CH2Cl2 abs. (7.5 mL) was added very slowly (using a syringe pump, 7 mL/h) and the mixture was stirred for 15 min at −78 °C. Then, a solution of the alcohol 8a (1.043 g, 5 mmol) in CH2Cl2 abs. (7.5 mL) was added (using a syringe pump, 12 mL/h). The mixture was stirred for additional 45 min at −78 °C before NEt3 (3.5 mL, 25 mmol) was added. After warming to rt, n-hexane (40 mL) was added. The precipitate was filtered off using a glass suction filter and washed several times with Et2O. The filtrate was concentrated (600 mbar, 40 °C) and the filtration procedure was repeated once. The solvent was removed in vacuo, and the residue was purified by flash column chromatography (Ø 5.5 cm, cyclohexane:ethyl acetate = 8:2, length 20 cm, fraction 65 mL, Rf = 0.16). Colorless oil with sweet smell, yield 0.994 g (91%). C12H14O3, Mr = 206.3. MS (EI): m/z = 207 (M + H, 53), 205 (M-H, 76), 177 (M-CHO, 6), 105 (PhCO, 100), 77 (Ph, 81). IR (neat): ͠ν [cm−1] = 2961, 2921, 2856 (C-H), 2736 (C-Haldehyde), 1722 (C=O), 1099 (C-O), 752, 698 (arom. monosubst.). 1H NMR (CDCl3): δ [ppm] = 1.64 (dtd, J = 13.2/2.5/1.4 Hz, 1H, 5-Heq), 1.90 (dddd, J = 13.1/12.3/11.4/5.0 Hz, 1H, 5-Hax), 2.63 (ddd, J = 17.0/5.2/1.6 Hz, 1H, CH2-CHO), 2.83 (ddd, J = 17.0/7.3/2.1 Hz, 1H, CH2-CHO), 4.02 (td, J = 12.2/2.6 Hz, 1H, 6-Hax), 4.29 (ddd, J = 11.5/5.0/1.4 Hz, 1H, 6-Heq), 4.41–4.47 (m, 1 H, 4-Hax), 5.57 (s, 1H, 2-Hax), 7.33–7.38 (m, 3H, Ar-H), 7.45–7.48 (m, 2 H, Ar-H), 9.85 (t, J = 1.8 Hz, 1H, CHO). HPLC (method ACN): purity 90.4%, tR = 14.05 min. The substance was rather unstable and always used within three days after purification.
  • trans-(2-Ethyl-2-phenyl-1,3-dioxan-4-yl)acetaldehyde (9b).
Pharmaceuticals 18 01300 i010
Under N2 atmosphere, oxalyl chloride (0.87 mL, 10.15 mmol) was dissolved in CH2Cl2 abs. (26 mL) and cooled down to −78 °C. At this temperature, a solution of DMSO (1.44 mL, 20.30 mmol) in CH2Cl2 abs. (12 mL) was added very slowly (using a syringe pump, 9 mL/h) and the mixture was stirred for 15 min at −78 °C. Then a solution of the alcohol 8b (2.00 g, 8.46 mmol) in CH2Cl2 abs. (12 mL) was added (using a syringe pump, 18 mL/h). The mixture was stirred for additional 45 min at −78 °C before NEt3 (6.6 mL, 42.30 mmol) was added. After warming to rt, n-hexane (40 mL) was added. The precipitate was filtered off using a glass suction filter and washed several times with Et2O. The filtrate was concentrated (600 mbar, 40 °C) and the filtration procedure was repeated once. The solvent was removed in vacuo, and the residue was purified by flash column chromatography (6 cm, cyclohexane:ethyl acetate = 9.25:0.75, length 18 cm, fraction 65 mL, Rf = 0.09). Colorless solid, mp 55.8 °C, yield 1.76 g (89%). C14H18O3, Mr = 234.3. MS (EI): m/z [%] = 235 (M + H, 41), 205 (M-CH3-CH2, 100), 105 (Ph-CO, 52). IR (neat): ͠ν [cm−1] = 2972, 2930, 2877 (C-H), 2730 (C-Haldehyde), 1725 (C=O), 758, 704 (arom. monosubst.). 1H NMR (CDCl3): δ [ppm] = 0.79 (t, J = 7.5 Hz, 3 H, diox-CH2-CH3), 1.34–1.39 (m, 1 H, 5-Heq), 1.73 (q, J = 7.5 Hz, 2 H, diox-CH2-CH3), 1.79 (qd, J = 12.3/5.4 Hz, 1 H, 5-Hax), 2.50 (ddd, J = 16.5/4.4/1.6 Hz, 1 H, CH2-CHO), 2.73 (ddd, J = 16.5/8.0/2.5 Hz, 1 H, CH2-CHO), 3.83 (td, J = 11.9/2.5 Hz, 1 H, 6-Hax), 3.90 (ddd, J = 11.5/5.4/1.5 Hz, 1 H, 6-Heq), 4.22–4.29 (m, 1 H, 4-Hax), 7.29–7.33 (m, 1 H, Ar-H), 7.36–7.43 (m, 4 H, Ar-H), 9.91 (dd, J = 2.3/1.7 Hz, 1 H, CHO). HPLC (method ACN): purity 98.7%, tR = 18.15 min.
  • Ethyl (2Z)-4-(cis-2-phenyl-1,3-dioxan-4-yl)but-2-enoate ((Z)-10a) and ethyl (2E)-4-(cis-2-phenyl-1,3-dioxan-4-yl)but-2-enoate ((E)-10a).
Pharmaceuticals 18 01300 i011
Under N2 atmosphere the commercially available P-ylide Ph3P=CH-CO2Et (1.23 g, 4.5 mmol) was dissolved in THF abs. (20 mL). A solution of the aldehyde 9a (619 mg, 3 mmol) in THF abs. (8 mL) was added, and the solution was diluted with THF to a total volume of 40 mL. The mixture was stirred for 24 h at rt and then heated to reflux for 2 h. Water (30 mL) and brine (15 mL) were added, and the mixture was extracted with ethyl acetate (3 × 30 mL). The combined organic layers were washed with brine (1 × 40 mL) and dried (K2CO3). The solvent was removed in vacuo, and the residue was adsorbed on silica gel and loaded on the column (Ø 5.5 cm, cyclohexane:ethyl acetate = 9:1, length 18 cm, fraction 65 mL).
(Z)-10a (Rf = 0.15): Colorless oil, yield 76 mg (9.1%). C16H20O4, Mr = 276.3. IR (neat): ͠ν [cm−1] = 2977, 2922, 2851 (C-H), 1714 (CO2R), 1646 (C=C), 1098 (C-O), 750, 697 (arom. monosubst). 1H NMR (CDCl3): δ [ppm] = 1.29 (t, J = 7.1 Hz, 3 H, CO2CH2CH3), 1.56 (dtd, J = 13.3/3.8/1.4 Hz, 1 H, 5-Heq), 1.89 (dddd, J = 13.1/12.3/11.4/5.1 Hz, 1 H, 5-Hax), 2.87–2.95 (m, 1 H, diox-CH2-CH=CH), 3.10 (dddd, J = 15.7/7.6/4.5/1.7 Hz, 1 H, diox-CH2-CH=CH), 3.97 (ddd, J = 12.3/11.6/2.6 Hz, 1 H, 6-Hax), 3.96–4.02 (m, 1 H, 4-Hax), 4.18 (q, J = 7.1 Hz, 2 H, CO2CH2CH3), 4.27 (ddd, J = 11.3/4.9/1.1 Hz, 1 H, 6-Heq), 5.52 (s, 1 H, 2-Hax), 5.88 (dt, J = 11.6/1.8 Hz, 1 H, CH=CH-CO2R), 6.45 (ddd, J = 11.6/7.7/6.9 Hz, 1 H, CH=CH-CO2R), 7.31–7.39 (m, 3 H, Ar-H), 7.48–7.50 (m, 2 H, Ar-H). HPLC (method ACN): purity 93.0%, tR = 20.90 min. Contamination with 2.9% of (E)-10a (tR = 20.35 min) was observed.
(E)-10a (Rf = 0.12: Colorless oil, yield 712 mg (86%). C16H20O4, Mr = 276.3. MS (ESI): m/z [%] = 277 (M + H, 10), 294 (M + NH4, 22), 299 (M + Na, 26), 575 (2 × M + Na, 20), 577 (M + Ph3P = O + Na, 100). IR (neat): ͠ν [cm−1] = 2979, 2853 (C-H), 1715 (CO2R), 1656 (C=C), 1099 (C-O), 751, 697 (arom. monosubst). 1H NMR (CDCl3): δ [ppm] = 1.29 (t, J = 7.1 Hz, 3 H, CO2CH2-CH3), 1.53–1.58 (m, 1 H, 5-Heq), 1.85 (dddd, J = 13.1/12.3/11.4/5.0 Hz, 1 H, 5-Hax), 2.46 (dddd, J = 14.7/7.4/5.7/1.4 Hz, 1 H, diox-CH2-CH=CH), 1.60 (dtd, J = 14.8/6.9/1.5 Hz, 1 H, diox-CH2-CH=CH), 3.96 (td, J = 12.0/2.6 Hz, 1 H, 6-Hax), 3.95–4.02 (m, 1 H, 4-Hax), 4.19 (q, J = 7.1 Hz, 2 H, CO2CH2-CH3), 4.28 (ddd, J = 11.4/5.0/1.2 Hz, 1 H, 6-Heq), 5.52 (s, 1 H, 2-Hax), 5.93 (dt, J = 15.7/1.4 Hz, 1 H, CH=CH-CO2R), 7.01 (dt, J = 15.6/7.3 Hz, 1 H, CH=CH-CO2R), 7.33–7.39 (m, 3 H, Ar-H), 7.48–7.50 (m, 2 H, Ar-H). HPLC (method ACN): purity 93.4%, tR = 20.34 min. Contamination with 1.7% of (Z)-10a (tR = 20.35 min) was observed.
  • Methyl (2Z)-4-(trans-2-ethyl-2-phenyl-1,3-dioxan-4-yl)but-2-enoate ((Z)-10b) and methyl (2E)-4-(trans-2-ethyl-2-phenyl-1,3-dioxan-4-yl)but-2-enoate ((E)-10b).
Pharmaceuticals 18 01300 i012
Under N2 atmosphere the commercially available P-ylide Ph3P=CH-CO2CH3 (2.10 g, 6.27 mmol) was dissolved in THF abs. (20 mL). A solution of the aldehyde 9b (983 mg, 4.18 mmol) in THF abs. (10 mL) was added, and the solution was diluted with THF to a total volume of 65 mL. The mixture was stirred for 21 h at rt. Additional P-ylide (699 mg, 2.09 mmol) and THF abs. (10 mL) were added, and the mixture was stirred for another 2 h. Then, water (30 mL) and brine (15 mL) were added, and the mixture was extracted with ethyl acetate (3 × 30 mL). The combined organic layers were dried (K2CO3). The solvent was removed in vacuo, and the residue was adsorbed on silica gel and given on the column (Ø 5.5 cm, cyclohexane:ethyl acetate = 9.5:0.5, length 17 cm, fraction 65 mL).
(Z)-10b (Rf = 0.22): Colorless oil, yield 69 mg (5.7%). C17H22O4, Mr = 290.4. MS (ESI): m/z [%] = 313 (M + Na, 100). IR (neat): ͠ν [cm−1] = 2946, 2873 (C-H), 1721 (CO2R), 1647 (C=C), 758, 705 (arom. monosubst.). 1H NMR (CDCl3): δ [ppm] = 0.81 (t, J = 7.5 Hz, 3 H, diox-CH2-CH3), 1.29–1.33 (m, 1 H, 5-Heq), 1.74 (q, J = 7.5 Hz, 2 H, diox-CH2-CH3), 1.71–1.82 (m, 1 H, 5-Hax), 2.84 (dtd, J = 15.4/7.3/1.8 Hz, 1 H, diox-CH2-CH=CH), 2.96 (dddd, J = 15.6/7.4/4.5/1.8 Hz, 1 H, diox-CH2-CH=CH), 3.71 (s, 3 H, CO2CH3), 3.74–3.81 (m, 1 H, 6-Hax), 3.75–3.84 (m, 1 H, 4-Hax), 3.88 (ddd, J = 11.4/5.1/1.3 Hz, 1 H, 6-Heq), 5.93 (dt, J = 11.6/1.7 Hz, 1 H, CH=CH-CO2CH3), 6.51 (dt, J = 11.6/7.3 Hz, 1 H, CH=CH-CO2CH3), 7.26–7.40 (m, 5 H, Ar-H). HPLC (method ACN): purity 99.0%, tR = 22.07 min.
(E)-10b (Rf = 0.15): Colorless solid, mp 66.2 °C, yield 1.09 g (90%). C17H22O4, Mr = 290.4. MS (ESI): m/z [%] = 291 (M + H, 25), 313 (M + Na, 100). IR (neat): ͠ν [cm−1] = 2980, 2943 (C-H), 1719 (CO2R), 1662 (C=C), 759, 702 (arom. monosubst.). 1H NMR (CDCl3): δ [ppm] = 0.81 (t, J = 7.5 Hz, 3 H, diox-CH2-CH3), 1.28–1.32 (m, 1 H, 5-Heq), 1.74 (q, J = 7.5 Hz, 2 H, diox-CH2-CH3), 1.67–1.77 (m, 1 H, 5-Hax), 2.33–2.40 (m, 1 H, CH2-CH=CH), 2.49 (dtd, J = 14.3/7.0/1.2 Hz, 1 H, CH2-CH=CH), 3.75 (s, 3 H, CO2CH3), 3.74–3.83 (m, 2 H, 6-Hax + 4-Hax), 3.88 (ddd, J = 11.4/5.0/1.2 Hz, 1 H, 6-Heq), 5.92 (d broad, J = 15.7 Hz, 1 H, CH=CH-CO2CH3), 7.03 (dt, J = 15.7/7.4 Hz, 1 H, CH=CH-CO2CH3), 7.25–7.40 (m, 5 H, Ar-H). HPLC (method ACN): purity 99.0%, tR = 21.68 min.
  • Ethyl 4-(cis-2-phenyl-1,3-dioxan-4-yl)butanoate (11a).
Pharmaceuticals 18 01300 i013
The α,β-unsaturated ester (E/Z)-10a (900 mg, 3.25 mmol) was dissolved in methanol abs. (75 mL). Pd/C (10% Pd, 90 mg, 10% m/m) and ammonium formate (1.01 g, 16.25 mmol) were added. After purging with N2, the mixture was heated to reflux for 2 h, then cooled down to rt and filtered through Celite®. The solvent was removed in vacuo. In order to remove excess ammonium formate, the residue was dissolved in water (80 mL) and extracted with ethyl acetate (3 × 30 mL). The combined organic layers were washed with brine and dried (K2CO3). The solvent was removed in vacuo, and the remaining oil was purified by flash column chromatography (Ø 4 cm, n-hexane:ethyl acetate = 9:1, length 18 cm, fraction 30 mL, Rf = 0.12). Colorless oil, yield 833 mg (92%). C16H22O4, Mr = 278.3. MS (EI): m/z [%] = 278 (M, 19), 155 (M-PhCHO-H2O + H, 100), 91 (Ph-CH2, 70). IR (neat): ͠ν [cm−1] = 2952, 2849 (C-H), 1732 (C=O), 750, 698 (arom. monosubst.). 1H NMR (CDCl3): δ [ppm] = 1.25 (t, J = 7.1 Hz, 3 H, CO2CH2CH3), 1.51–1.91 (m, 6 H, 5-Hax+eq, diox-(CH2)2), 2.35 (t, J = 7.4 Hz, 2 H, CH2CO2Et), 3.82–3.88 (m, 1 H, 4-Hax), 3.96 (td, J = 11.9/2.5 Hz, 1 H, 6-Hax) 4.13 (q, J = 7.1 Hz, 2 H, CO2CH2CH3), 4.27 (dd broad, J = 11.4/4.9 Hz, 1 H, 6-Heq), 5.50 (s, 1 H, 2-Hax), 7.30–7.38 (m, 3 H, Ar-H), 7.48–7.50 (m, 2 H, Ar-H). HPLC (method ACN): purity 97.1%, tR = 20.34 min.
  • Methyl 4-(trans-2-ethyl-2-phenyl-1,3-dioxan-4-yl)butanoate (11b).
Pharmaceuticals 18 01300 i014
The α,β-unsaturated ester (E/Z)-11b (600 mg, 2.17 mmol) was dissolved in methanol abs. (50 mL). Pd/C (10% Pd, 60 mg, 10% m/m) and ammonium formate (808 mg, 13.02 mmol) were added. After purging with N2, the mixture was heated to reflux for 3 h (until the IR-band at 1648 cm−1 was gone), then cooled down to rt and filtered through Celite®. The solvent was removed in vacuo. In order to remove excess ammonium formate, the residue was dissolved in water (60 mL) and extracted with ethyl acetate (3 × 30 mL). The combined organic layers were washed with brine (1 × 30 mL) and dried (K2CO3). The solvent was removed in vacuo, and the residue was purified by flash column chromatography (Ø 4 cm, cyclohexane:ethyl acetate = 9:1, length 17 cm, fraction 30 mL, Rf = 0.20). Colorless oil, yield 580 mg (92%). C17H24O4, Mr = 292.4. MS (EI): m/z [%] = 292 (M, 18), 263 (M-CH2CH3, 18), 81 (100). IR (neat): ͠ν [cm−1] = 2945, 2871 (C-H), 1738 (C=O), 758, 705 (arom. monosubst.). 1H NMR (CDCl3): δ [ppm] = 0.79 (t, J = 7.5 Hz, 3 H, diox-CH2-CH3), 1.24–1.29 (m, 1 H, 5-Heq), 1.41–1.50 (m, 1 H, diox-(CH2)2), 1.56–1.78 (m, 3 H, 5-Hax, diox-(CH2)2), 1.73 (q, J = 7.5 Hz, 2 H, diox-CH2-CH3), 1.85–1.96 (m, 1 H, diox-(CH2)2), 2.31–2.43 (m, 2 H, CH2CO2CH3), 3.61–3.70 (m, 1 H, 4-Hax), 3.68 (s, 3 H, CO2CH3), 3.77 (td, J = 11.6/2.6 Hz, 1 H, 6-Hax), 3.87 (ddd, J = 11.4/5.0/1.3 Hz, 1 H, 6-Heq), 7.27–7.40 (m, 5 H, Ar-H). HPLC (method ACN): purity > 99.9%, tR = 21.67 min.
  • 4-(cis-2-Phenyl-1,3-dioxan-4-yl)butan-1-ol (12a).
Pharmaceuticals 18 01300 i015
Under N2 atmosphere, a solution of the saturated ester 11a (650 mg, 2.33 mmol) in THF abs. (40 mL) was cooled down to 0 °C. LiBH4 (4 M solution in THF, 2.3 mL, 9.2 mmol) was added slowly. The mixture was stirred at rt for 17 h and then heated to reflux for 2 h. For workup, the mixture was cooled down to rt and 0.1 M HCl (60 mL) was added dropwise. When H2 formation was finished, the mixture was saturated with NaCl and extracted with ethyl acetate (2 × 30 mL). The combined organic layers were washed with saturated aqueous solution of NaHCO3 (30 mL) and with brine (30 mL). After drying (K2CO3), the solvent was removed in vacuo, and the residue was purified by flash column chromatography (Ø 4 cm, cyclohexane:ethyl acetate = 7:3, length 17 cm, fraction 30 mL, Rf = 0.12). Colorless oil, yield 532 mg (97%). C14H20O3, Mr = 236.3. MS (EI): m/z [%] = 235 (M-H, 17), 219 (M-H2O + H, 27), 105 (PhCO, 73), 91 (PhCH2, 57). IR (neat): ͠ν [cm−1] = 3410 (O-H), 2938, 2860 (C-H), 1103 (C-O), 750, 697 (arom. monosubst.) 1H NMR (CDCl3): δ [ppm] = 1.42–1.74 (m, 7 H, 5-Heq, diox-(CH2)3), 1.82 (tdd, J = 12.5/11.3/5.0 Hz, 1 H, 5-Hax), 3.66 (t, J = 6.3 Hz, 2 H, CH2-OH), 3.81–3.87 (m, 1 H, 4-Hax), 3.96 (td, J = 11.9/2.6 Hz, 1 H, 6-Hax), 4.27 (ddd, J = 11.4/5.0/1.2 Hz, 1 H, 6-Heq), 5.50 (s, 1 H, 2-Hax), 7.30–7.38 (m, 3 H, Ar-H), 7.48–7.50 (m, 2 H, Ar-H). A signal for the OH proton is not seen in the spectrum. HPLC (method ACN): purity 95.2%, tR = 16.90 min.
  • 4-(trans-2-Ethyl-2-phenyl-1,3-dioxan-4-yl)butan-1-ol (12b).
Pharmaceuticals 18 01300 i016
Under N2 atmosphere, a solution of the saturated ester 11b (500 mg, 1.71 mmol) in THF abs. (25 mL) was cooled down to 0 °C. LiBH4 (4 M solution in THF, 6.84 mL, 6.84 mmol) was added slowly. The mixture was stirred at rt for 17 h and then heated to reflux for 3 h. For workup, the mixture was cooled down to rt and 0.1 M HCl (60 mL) was added dropwise. When H2 formation was finished, the mixture was extracted with ethyl acetate (2 × 30 mL). The combined organic layers were washed with saturated aqueous solution of NaHCO3 (30 mL) and with brine (30 mL). After drying (K2CO3), the solvent was removed in vacuo, and the residue was purified by flash column chromatography (Ø 4 cm, cyclohexane:ethyl acetate = 7:3, length 17 cm, fraction 30 mL, Rf = 0.19). Colorless solid, mp 49.3 °C, yield 434 mg (96%). C16H24O3, Mr = 264.4. MS (EI): m/z [%] = 265 (M + H, 4), 247 (M + H-H2O, 10), 235 (M-CH2CH3, 18), 113 (C7H13O, 100), 105 (Ph-CO, 45). IR (neat): ͠ν [cm−1] = 3368 (O-H), 2927, 2866 (C-H), 767, 704 (arom. monosubst.). 1H NMR (CDCl3): δ [ppm] = 0.80 (t, J = 7.5 Hz, 3 H, diox-CH2-CH3), 1.25–1.30 (m, 1 H, 5-Heq), 1.38–1.51 (m, 2 H, diox-(CH2)3), 1.58–1.70 (m, 5 H, 5-Hax, diox-(CH2)3), 1.74 (q, J = 7.4 Hz, 2 H, diox-CH2-CH3), 3.62–3.67 (m, 1 H, 4-Hax), 3.69 (t, J = 6.2 Hz, 2 H, CH2-OH), 3.77 (td, J = 12.0/2.5 Hz, 1 H, 6-Hax), 3.87 (ddd, J = 11.4/5.1/1.3 Hz, 1 H, 6-Heq), 7.27–7.40 (m, 5 H, Ar-H). A signal for the OH proton is not seen in the spectrum. HPLC (method ACN): purity 99.9%, tR = 19.60 min.
  • cis-4-(4-Azidobutyl)-2-phenyl-1,3-dioxane (13a).
Pharmaceuticals 18 01300 i017
The alcohol 12a (100 mg, 0.42 mmol) was dissolved in dry toluene (molecular sieves 4 Å, 4 mL). Zn(N3)2 · 2 pyridine 80 (97 mg, 0.315 mmol) and PPh3 (220 mg, 0.84 mmol) were added followed by a small amount of toluene (2 mL). Under N2 atmosphere, diisopropyl azodicarboxylate (0.16 mL, 0.84 mmol) was added dropwise and the mixture was stirred at rt for 5 h. The mixture was filtered through Celite®, the solvent was removed in vacuo, and the residue was purified by flash column chromatography (Ø 3 cm, cyclohexane:ethyl acetate = 19:1, length 18 cm, fraction 10 mL, Rf = 0.18). Colorless oil, yield 74 mg (67%). C14H19N3O2, Mr = 261.3. MS (ESI): m/z [%] = 284 (M + Na, 82), 545 (2 × M + Na, 32). IR (neat): ͠ν [cm−1] = 2944, 2860 (C-H), 2091 (N3), 1105 (C-O), 751, 698 (arom. monosubst.). 1H NMR (CDCl3): δ [ppm] = 1.42–1.73 (m, 7 H, 5-Heq, diox-(CH2)3), 1.82 (tdd, J = 12.9/11.3/5.0 Hz, 1 H, 5-Hax), 3.29 (t, J = 6.6 Hz, 2 H, CH2-N3), 3.80–3.87 (m, 1 H, 4-Hax), 3.96 (td, J = 12.0/2.7 Hz, 1 H, 6-Hax), 4.27 (ddd, J = 11.4/5.0/1.1 Hz, 1 H, 6-Heq), 5.50 (s, 1 H, 2-Hax), 7.30–7.38 (m, 3 H, Ar-H), 7.47–7.50 (m, 2 H, Ar-H). HPLC (method ACN): purity 96.5%, tR = 21.75 min.
  • Azidobutyl-2-ethyl-2-phenyl-1,3-dioxane (13b).
Pharmaceuticals 18 01300 i018
The alcohol 12b (120 mg, 0.45 mmol) was dissolved in dry toluene (molecular sieves 4 Å, 7 mL). Zn(N3)2·2 pyridine 80 (97 mg, 0.315 mmol) and PPh3 (220 mg, 0.84 mmol) were added followed by a small amount of toluene (2 mL). Under N2 atmosphere, diisopropyl azodicarboxylate (0.18 mL, 0.91 mmol) was added dropwise and the mixture was stirred at rt for 5 h. The mixture was filtered through Celite®, the solvent was removed in vacuo, and the residue was purified by flash column chromatography (Ø 3.5 cm, cyclohexane:ethyl acetate = 19:1, length 20 cm, fraction 20 mL, Rf = 0.19). Colorless oil, yield 76 mg (58%). C16H23N3O2, Mr = 289.4. MS (EM, APCI): m/z = calculated for C16H24N3O2 290.1863, found 290.1933. IR (neat): ͠ν [cm−1] = 2940, 2867 (C-H), 2091 (N3), 58, 705 (arom. monosubst.). 1H NMR (CDCl3): δ [ppm] = 0.80 (t, J = 7.5 Hz, 3 H, diox-CH2-CH3), 1.24–1.29 (m, 1 H, 5-Heq), 1.40–1.70 (m, 7 H, 5-Hax, diox-(CH2)3), 1.74 (q, J = 7.4 Hz, 2 H, diox-CH2-CH3), 3.31 (t, J = 6.6 Hz, 2 H, CH2-N3), 3.61–3.68 (m, 1 H, 4-Hax), 3.77 (td, J = 11.5/2.4 Hz, 1 H, 6-Hax), 3.88 (ddd, J = 11.4/5.1/1.4 Hz, 1 H, 6-Heq), 7.26–7.41 (m, 5 H, Ar-H). HPLC (method ACN): purity 99.7%, tR = 23.72 min.
  • 4-(cis-2-Phenyl-1,3-dioxan-4-yl)butan-1-amine (14a).
Pharmaceuticals 18 01300 i019
In a 25 mL Schlenk flask, the azide 13a (64 mg, 0.24 mmol) was dissolved in dry ethyl acetate (molecular sieves 4 Å, 10 mL). Pd/C (10% Pd, 7 mg, 11% m/m) was added. The mixture was reacted with H2 at atmospheric pressure (using a rubber balloon). After 2 h, the H2 balloon was totally deflated and refilled with H2. The reaction was continued for additional 3 h. Afterwards, the mixture was filtered through Celite®. To eluate the basic amine from Celite®, it was necessary to wash with a basic eluent (see fc). The filtrate was concentrated in vacuo, and the residue was purified by flash column chromatography (Ø 2 cm, NH3 (16 mL) + MeOH (100 mL) + CH2Cl2 (ad 2000 mL), length 18 cm, fraction 10 mL, Rf = 0.06). Colorless oil, yield 47 mg (84%). C14H21NO2, Mr = 235.3. MS (EM, ESI): m/z = calculated for C14H22NO2 236.1645, found 236.1645. IR (neat): ͠ν [cm−1] = 3303, 3034, 2931 (N-H, C-H), 1104 (C-O), 749, 697 (arom. monosubst.). 1H NMR (CDCl3): δ [ppm] = 1.40–1.73 (m, 9 H, 5-Heq, diox-(CH2)3, NH2), 1.81 (tdd, J = 12.5/11.4/5.0 Hz, 1 H, 5-Hax), 2.71 (t, J = 6.6 Hz, 2 H, CH2-NH2), 3.80–3.86 (m, 1 H, 4-Hax), 3.95 (td, J = 12.0/2.5 Hz, 1 H, 6-Hax), 4.27 (ddd, J = 11.3/4.9/1.0 Hz, 1 H, 6-Heq), 5.50 (s, 1 H, 2-Hax), 7.29–7.38 (m, 3 H, Ar-H), 7.48–7.50 (m, 2 H, Ar-H). HPLC (method ACN): purity 99.6%, tR = 12.77 min.
  • 4-(trans-2-Ethyl-2-phenyl-1,3-dioxan-4-yl)butan-1-amine (14b).
Pharmaceuticals 18 01300 i020
In a 25 mL Schlenk flask the azide 13b (65 mg, 0.22 mmol) was dissolved in dry ethyl acetate (molecular sieves 4 Å, 10 mL). Pd/C (10% Pd, 6.5 mg, 10% m/m) was added. The mixture was reacted with H2 at atmospheric pressure (using a rubber balloon). After 2 h and after 3 h, the H2 balloon was totally deflated and refilled with H2. The reaction was stopped after 4.5 h by filtration through Celite®. To eluate the basic amine from Celite®, it was necessary to wash with a basic eluent (see fc). The filtrate was concentrated in vacuo, and the residue was purified by flash column chromatography (Ø 2 cm, NH3 (16 mL) + MeOH (100 mL) + CH2Cl2 (ad 2000 mL), length 18 cm, fraction 10 mL, Rf = 0.11). Colorless solid, mp 83.0 °C, yield 37 mg (63%). C16H25NO2, Mr = 263.4. MS (EM, ESI): m/z = calculated for C16H24NO2 264.1958, found 264.1963. IR (neat): ͠ν [cm−1] = 2972, 2935, 2864 (C-H), 760, 706 (arom. monosubst.) 1H NMR (CDCl3): δ [ppm] = 0.79 (t, J = 7.5 Hz, 3 H, diox-CH2-CH3), 1.24–1.30 (m, 1 H, 5-Heq), 1.35–1.73 (m, 9 H, 5-Hax, diox-(CH2)3, NH2), 1.74 (q, J = 7.5 Hz, 2 H, diox-CH2-CH3), 2.73 (t, J = 6.7 Hz, 2 H, CH2-NH2), 3.59–3.68 (m, 1 H, 4-Hax), 3.76 (td, J = 11.5/2.5 Hz, 1 H, 6-Hax), 3.87 (ddd, J = 11.4/5.2/1.4 Hz, 1 H, 6-Hax), 7.27–7.41 (m, 5 H, Ar-H). HPLC (method ACN): purity 98.3%, tR = 15.40 min.
  • [4-(cis-2-Phenyl-1,3-dioxan-4-yl)butyl]methanesulfonate (15a).
Pharmaceuticals 18 01300 i021
Under N2 atmosphere, the alcohol 12a (451 mg, 1.91 mmol) was dissolved in CH2Cl2 abs. (30 mL) and treated with NEt3 (0.79 mL, 5.73 mmol). The mixture was cooled down to 0 °C. At this temperature, methanesulfonyl chloride (0.22 mL, 2.87 mmol) was added dropwise and the mixture was stirred at rt for 4 h. Then, CH2Cl2 (30 mL) was added, and the mixture was washed with 0.5 M NaOH (2 × 25 mL) and with saturated aqueous solution of NH4Cl (1 × 25 mL). The organic layer was dried (K2CO3). The solvent was removed in vacuo, and the residue was purified by flash column chromatography (Ø 4 cm, cyclohexane:ethyl acetate = 7:3, length 18 cm, fraction 30 mL, Rf = 0.21). Colorless oil, yield 578 mg (96%). C15H22O5S, Mr = 314.4. MS (EI): m/z [%] = 314 (M, 41), 105 (PhCO, 37), 91 (PhCH2, 35). IR (neat): ͠ν [cm−1] = 2924, 2856 (C-H), 1350, 1170 (RO-SO2R), 1104 (C-O), 752, 699 (arom. monosubst.). 1H NMR (CDCl3): δ [ppm] = 1.50–1.87 (m, 8 H, 5-Hax+eq, diox-(CH2)3), 2.98 (s, 3 H, SO2CH3), 3.81–3.87 (m, 1 H, 4-Hax), 3.96 (td, J = 12.0/2.6 Hz, 1 H, 6-Hax), 4.24 (t, J = 6.5 Hz, 2 H, CH2-OSO2CH3), 4.27 (ddd, J = 11.4/5.0/1.2 Hz, 1 H, 6-Heq), 5.50 (s, 1 H, 2-Hax), 7.30–7.38 (m, 3 H, Ar-H), 7.47–7.49 (m, 2 H, Ar-H). HPLC (method ACN): purity 97.4%, tR = 19.72 min.
  • [4-(trans-2-Ethyl-2-phenyl-1,3-dioxan-4-yl)butyl] methanesulfonate (15b).
Pharmaceuticals 18 01300 i022
Under N2 atmosphere, the alcohol 12b (250 mg, 0.95 mmol) was dissolved in CH2Cl2 abs. (30 mL) and treated with NEt3 (0.40 mL, 2.85 mmol). The mixture was cooled down to 0 °C. At this temperature, methanesulfonyl chloride (0.11 mL, 1.43 mmol) was added dropwise and the mixture was stirred at rt for 4 h. Then, CH2Cl2 (30 mL) was added, and the mixture was washed with 0.5 M NaOH (2 × 25 mL) and with saturated aqueous solution of NH4Cl (1 × 25 mL). The organic layer was dried (K2CO3). The solvent was removed in vacuo, and the residue was purified by flash column chromatography (Ø 3 cm, cyclohexane:ethyl acetate = 8:2, length 17 cm, fraction 20 mL, Rf = 0.11). Colorless oil, yield 314 mg (97%). C17H26O5S, Mr = 342.5. MS (EI): m/z [%] = 343 (M + H, 1), 313 (M-CH2CH3, 17), 105 (PhCO, 28), 95 (100). IR (neat): ͠ν [cm−1] = 2941, 2871 (C-H), 1352, 1171 (RO-SO2R), 759, 705 (arom. monosubst.). 1H NMR (CDCl3): δ [ppm] = 0.79 (t, J = 7.5 Hz, 3 H, diox-CH2-CH3), 1.24–1.29 (m, 1 H, 5-Heq), 1.42–1.84 (m, 7 H, 5-Hax, diox-(CH2)3), 1.73 (q, J = 7.5 Hz, 2 H, diox-CH2-CH3), 3.02 (s, 3 H, SO2CH3), 3.62–3.68 (m, 1 H, 4-Hax), 3.77 (td, J = 11.5/2.5 Hz, 1 H, 6-Hax), 3.88 (ddd, J = 11.4/5.1/1.4 Hz, 1 H, 6-Heq), 4.27 (t, J = 6.5 Hz, 2 H, CH2-O-SO2CH3), 7.27–7.41 (m, 5 H, Ar-H). HPLC (method ACN): purity 99.9%, tR = 21.43 min.
  • N-Methyl-4-(cis-2-phenyl-1,3-dioxan-4-yl)butan-1-amine (16a) and N-methyl-N,N-bis[4-(cis-2-phenyl-1,3-dioxan-4-yl)butyl]amine (NR3).
Pharmaceuticals 18 01300 i023
Mesylate 15a (86 mg, 0.27 mmol) was dissolved in a solution of methylamine in ethanol (33% m/m, 8 mL). The mixture was heated to reflux for 3 h, using a reflux apparatus equipped with a rubber balloon to avoid loss of gaseous amine. Ethanol was removed under reduced pressure. The residue was dissolved in CH2Cl2 (20 mL) and washed with 1 M NaOH (2 × 10 mL). The organic layer was dried (K2CO3) and the solvent was removed in vacuo, giving a pale yellow oil which was purified by flash column chromatography (Ø 2 cm, gradient cyclohexane:ethyl acetate + 1% N,N-dimethylethanamine → ethyl acetate:MeOH 5:1 + 2.5% N,N-dimethylethanamine, length 17 cm, fraction 10 mL). The first eluent gave the dialkylated tertiary amine NR3 (Rf = 0.26), the second eluent gave the monoalkylated secondary amine 16a (Rf = 0.11).
Secondary amine 16a: Colorless oil, yield 48 mg (70%). C15H23NO2, Mr = 249.4. MS (EM, APCI): m/z = calculated for C15H24NO2 250.1802, found 250.1790. IR (neat): ͠ν [cm−1] = 2929, 2854, 2790 (C-H), 1103 (C-O), 750, 697 (arom. monosubst.). 1H NMR (CDCl3): δ [ppm] = 1.37–1.75 (m, 7 H, 5-Heq, diox-(CH2)3)), 1.75–1.85 (m, 1 H, 5-Hax), 2.01 (s broad, 1 H, NH), 2.44 (s, 3 H, N-CH3), 2.63 (t, J = 6.9 Hz, 2 H, CH2-N-CH3), 3.80–3.86 (m, 1 H, 4-Hax), 3.95 (td, J = 11.9/2.5 Hz, 1 H, 6-Hax), 4.26 (dd broad, J = 11.3/4.3 Hz, 1 H, 6-Heq), 5.50 (s, 1 H, 2-Hax), 7.29–7.38 (m, 3 H, Ar-H), 7.48–7.50 (m, 2 H, Ar-H). HPLC (method ACN): purity 97.5%, tR = 12.54 min. The substance was sensitive to heat and air.
Tertiary amine NR3: Colorless oil, yield 15 mg (24%). C29H41NO4, Mr = 467.6. MS (EM, ESI): m/z = calculated for C29H42NO4 468.3108, found 468.3110. IR (neat): ͠ν [cm−1] = 2941, 2854, 2786 (C-H), 1103 (C-O), 749, 696 (arom. monosubst.) 1H NMR (CDCl3): δ [ppm] = 1.36–1.74 (m, 14 H, 2 × 5-Heq, 2 × diox-(CH2)3), 1.80 (tdd, J = 12.7/11.3/5.0 Hz, 2 H, 2 × 5-Hax), 2.21 (s, 3 H, N-CH3), 2.33 (t, J = 7.0 Hz, 4 H, CH2-N-CH2), 3.79–3.84 (m, 2 H, 2 × 4-Hax), 3.95 (td, J = 12.0/2.6 Hz, 2 H, 2 × 6-Hax), 4.26 (dd broad, J = 11.3/4.9 Hz, 2 H, 2 × 6-Heq), 5.49 (s, 2 H, 2 × 2-Hax), 7.29–7.38 (m, 6 H, Ar-H), 7.48–7.50 (m, 4 H, Ar-H). HPLC (method ACN): purity 98.4%, tR = 20.15 min.
  • 4-(trans-2-Ethyl-2-phenyl-1,3-dioxan-4-yl)-N-methylbutan-1-amine (16b).
Pharmaceuticals 18 01300 i024
Mesylate 15b (58 mg, 0.17 mmol) was dissolved in a solution of methylamine in ethanol (33% m/m, 5 mL). The mixture was heated to reflux for 5 h, using a reflux apparatus equipped with a rubber balloon to avoid loss of gaseous amine. Ethanol was removed under reduced pressure. The residue was dissolved in CH2Cl2 (10 mL) and washed with 1 M NaOH (2 × 10 mL). The organic layer was dried (K2CO3) and the solvent was removed in vacuo, giving a pale yellow oil which was purified by flash column chromatography (Ø 2 cm, NH3 (16 mL) + MeOH (100 mL) + CH2Cl2 (ad 2000 mL), length 17 cm, fraction 10 mL, Rf = 0.11). Colorless oil, yield 35 mg (74%). C17H27NO2, Mr = 277.4. MS (EM, ESI): m/z = calculated for C17H28NO2 278.2115, found 278.2112. IR (neat): ͠ν [cm−1] = 2928, 2863, 2788 (C-H), 757, 704 (arom. monosubst.). 1H NMR (CDCl3): δ [ppm] = 0.79 (t, J = 7.5 Hz, 3 H, diox-CH2-CH3), 1.25–1.29 (m, 1 H, 5-Heq), 1.36–1.73 (m, 8 H, 5-Hax, diox-(CH2)3, NH), 1.74 (q, J = 7.5 Hz, 2 H, diox-CH2-CH3), 2.46 (s, 3 H, N-CH3), 2.62 (t, J = 7.0 Hz, 2 H, CH2-N-CH3), 3.61–3.67 (m, 1 H, 4-Hax), 3.73–3.80 (m, 1 H, 6-Hax), 3.87 (ddd, J = 11.4/5.0/1.4 Hz, 1 H, 6-Heq), 7.26–7.40 (m, 5 H, Ar-H). HPLC (method ACN): purity 98.9%, tR = 16.33 min.
  • N-Benzyl-4-(cis-2-phenyl-1,3-dioxan-4-yl)butan-1-amine (17a).
Pharmaceuticals 18 01300 i025
Mesylate 15a (107 mg, 0.34 mmol) was dissolved in dry acetonitrile (molecular sieves 3 Å, 10 mL). K2CO3 (140 mg, 1.02 mmol) and freshly distilled benzylamine (48 μL, 0.44 mmol) were added, and the mixture was heated to reflux for 16 h. To complete the reaction, additional benzylamine (24 μL, 0.22 mmol) was added, and the mixture was heated to reflux for another 2 h. For workup, the solvent was removed in vacuo, and the residue was transferred into a separatory funnel with 0.1 M HCl and a small amount of ethyl acetate. The pH value was adjusted to 3–4 by adding a few drops of 0.5 M HCl. The mixture was quickly extracted with ethyl acetate. The organic layer contained small amounts of educt 15a but no product 17a (TLC-control) and was discarded. The aqueous layer was alkalized with 2 M NaOH and again extracted with ethyl acetate (3 × 10 mL). The combined organic layers were dried (K2CO3). The solvent was removed in vacuo, and the residue was purified by flash column chromatography (Ø 2 cm, cyclohexane:ethyl acetate = 7:3 + 1% N,N-dimethylethanamine, length 8 cm, fraction 8 mL, Rf = 0.09). Colorless oil, yield 36 mg (32%). C21H27NO2, Mr = 325.4. MS (EI): m/z [%] = 326 (M + H, 2), 248 (M-Ph, 4), 106 (PhCHO, 64), 91 (PHCH2, 100). IR (neat): ͠ν [cm−1] = 3030, 2928, 2853 (C-H), 1105 (C-O), 746, 696 (arom. monosubst.) 1H NMR (CDCl3): δ [ppm] = 1.38–1.71 (m, 7 H, 5-Heq, diox-(CH2)3), 1.80 (tdd, J = 12.5/11.3/5.0 Hz, 1 H, 5-Hax), 2.65 (t, J = 6.9 Hz, 2 H, CH2-NHBz), 3.79 (s, 2 H, Ph-CH2-N), 3.80–3.85 (m, 1 H, 4-Hax), 3.95 (td, J = 12.9/2.6 Hz, 1 H, 6-Hax), 4.26 (ddd, J = 11.3/4.9/1.0 Hz, 1 H, 6-Heq), 5.49 (s, 1 H, 2-Hax), 7.22–7.38 (m, 8 H, Ar-H), 7.48–7.50 (m, 2 H, Ar-H). A signal for the NH proton is not seen in the spectrum. HPLC (method ACN): purity 98.2%, tR = 17.69 min.
  • N-Benzyl-4-(trans-2-ethyl-2-phenyl-1,3-dioxan-4-yl)butan-1-amine (17b).
Pharmaceuticals 18 01300 i026
Mesylate 15b (100 mg, 0.29 mmol) was dissolved in dry acetonitrile (molecular sieves 3 Å, 10 mL). K2CO3 (120 mg, 0.87 mmol) and freshly distilled benzylamine (48 μL, 0.44 mmol) were added, and the mixture was heated to reflux for 8 h. Additional benzylamine (48 μL, 0.44 mmol) was added, and the mixture was heated to reflux for another 17 h overnight. For workup, the solvent was removed in vacuo, and the residue was transferred into a separatory funnel with water and a small amount of ethyl acetate. The pH value was adjusted to 9–10 with 1 M NaOH and the mixture was extracted with ethyl acetate (3 × 20 mL). The combined organic layers were washed with brine (1 × 20 mL) and dried (K2CO3). The solvent was removed in vacuo, and the residue was purified by flash column chromatography (Ø 2.5 cm, cyclohexane:ethyl acetate = 8:2 + 0.5% N,N-dimethylethanamine, length 18 cm, fraction 10 mL, Rf = 0.15). Colorless oil, yield 84 mg (82%). C23H31NO2, Mr = 353.5. MS (EM, ESI): m/z = calculated for C23H32NO2 354.2428, found 354.2424. IR (neat): ͠ν [cm−1] = 3026, 2928, 2862 (C-H), 757, 699 (arom. monosubst.). 1H NMR (CDCl3): δ [ppm] = 0.79 (t, J = 7.5 Hz, 3 H, diox-CH2-CH3), 1.23–1.28 (m, 1 H, 5-Heq), 1.37–1.71 (m, 8 H, 5-Hax, diox-(CH2)3, NH), 1.73 (q, J = 7.5 Hz, 2 H, diox-CH2-CH3), 2.66 (t, J = 7.0 Hz, 2 H, CH2-NHBz), 3.59–3.66 (m, 1 H, 4-Hax), 3.73–3.79 (m, 1 H, 6-Hax), 3.81 (s, 2 H, N-CH2-Ph), 3.87 (ddd, J = 11.4/5.1/1.4 Hz, 1 H, 6-Heq), 7.23–7.39 (m, 10 H, Ar-H). HPLC (method ACN): purity 99.2%, tR = 19.16 min.
  • N-Benzyl-N-methyl-4-(cis-2-phenyl-1,3-dioxan-4-yl)butan-1-amine (18a).
Pharmaceuticals 18 01300 i027
Mesylate 15a (80 mg, 0.25 mmol) was dissolved in dry acetonitrile (molecular sieves 3 Å, 10 mL). K2CO3 (104 mg, 0.75 mmol) and N-methylbenzylamine (48 μL, 0.44 mmol) were added, and the mixture was heated to reflux for 7 h. To complete the transformation, additional N-methylbenzylamine (48 μL, 0.44 mmol) was added, and the mixture was heated to reflux for another 16 h. For workup, the solvent was removed in vacuo, and the residue was transferred into a separatory funnel with water and ethyl acetate. The pH value was adjusted to 9–10 with 2 M NaOH. The mixture was extracted with ethyl acetate (3 × 10 mL). The combined organic layers were dried (K2CO3), the solvent was removed in vacuo, and the residue was purified by flash column chromatography (Ø 2 cm, gradient CH2Cl2:MeOH = 97.5:2.5 → CH2Cl2:MeOH = 95:5, length 19 cm, fraction 10 mL, Rf = 0.30 (CH2Cl2:MeOH = 95:5)). Colorless oil, yield 68 mg (80%). C22H29NO2, Mr = 339.5. MS (EM, APCI): m/z = calculated for C22H30NO2 340.2271, found 340.2313. IR (neat): ͠ν [cm−1] = 2941, 2842, 2785 (C-H), 740, 696 (arom. monosubst). 1H NMR (CDCl3): δ [ppm] = 1.36–1.72 (m, 7 H, 5-Heq, diox-(CH2)3), 1.80 (tdd, J = 12.7/11.3/5.0 Hz, 1 H, 5-Hax), 2.20 (s, 3 H, N-CH3), 2.39 (t, J = 7.0 Hz, 2 H, diox-(CH2)3-CH2-N), 3.49 (s, 2 H, N-CH2-Ph), 3.79–3.85 (m, 1 H, 4-Hax), 3.95 (td, J = 12.0/2.6 Hz, 1 H, 6-Hax), 4.27 (ddd, J = 11.3/4.9/0.9 Hz, 1 H, 6-Heq), 5.50 (s, 1 H, 2-Hax), 7.22–7.38 (m, 8 H, Ar-H), 7.49–7.50 (m, 2 H, Ar-H). HPLC (method ACN): purity 98.3%, tR = 18.33 min.
  • N-Benzyl-4-(trans-2-ethyl-2-phenyl-1,3-dioxan-4-yl)-N-methyl-butan-1-amine (18b).
Pharmaceuticals 18 01300 i028
Benzylamine 17b (50 mg, 0.14 mmol) was dissolved in CH2Cl2 abs. (7 mL). A solution of formalin (37%, stab. with 10–15% MeOH, 210 μL, 2.8 mmol) and NaBH(OAc)3 (95%, 62.5 mg, 0.28 mmol) were added, and the mixture was stirred at rt overnight. CH2Cl2 (10 mL) and water (15 mL) were added, and the aqueous layer was extracted with CH2Cl2 (3 × 10 mL). The combined organic layers were washed with brine (1 × 15 mL) and dried (K2CO3). The solvent was removed in vacuo, and the residue was purified by flash column chromatography (Ø 2 cm, CH2Cl2:MeOH = 96:4, length 20 cm, fraction 10 mL, Rf = 0.14). Colorless resin, yield 47 mg (91%). C24H33NO2, Mr = 367.5. MS (EM, APCI): m/z = calculated for C24H34NO2 368.2584, found 368.2625. IR (neat): ͠ν [cm−1] = 2940, 2865, 2786 (C-H), 757, 699 (arom. monosubst.). 1H NMR (CDCl3): δ [ppm] = 0.80 (t, J = 7.5 Hz, 3 H, diox-CH2-CH3), 1.26 (d broad, J = 12.8 Hz, 1 H, 5-Heq), 1.50–1.69 (m, 7 H, 5-Hax, diox-(CH2)3), 1.74 (q, J = 7.4 Hz, 2 H, diox-CH2-CH3), 2.23 (s, 3 H, N-CH3), 2.40–2.46 (m, 2 H, diox-(CH2)3-CH2-N), 3.53 (s broad, 2 H, N-CH2-Ph), 3.59–3.66 (m, 1 H, 4-Hax), 3.76 (td, J = 12.0/2.5 Hz, 1 H, 6-Hax), 3.87 (dd broad, J = 11.3/4.9 Hz, 1 H, 6-Heq), 7.23–7.40 (m, 10 H, Ar-H). HPLC (method ACN): purity 99.5%, tR = 20.01 min.
  • 1-[4-(cis-2-Phenyl-1,3-dioxan-4-yl)butyl]pyrrolidine (19a).
Pharmaceuticals 18 01300 i029
Mesylate 15a (80 mg, 0.25 mmol) was dissolved in dry acetonitrile (molecular sieves 3 Å, 10 mL). K2CO3 (104 mg, 0.75 mL) and freshly distilled pyrrolidine (31 μL, 0.375 mmol) were added, and the mixture was heated to reflux for 14.5 h. For workup, the solvent was removed in vacuo, and the residue was transferred into a separatory funnel with water and a small amount of ethyl acetate. The pH value was adjusted to 9-10 with 2 M NaOH. The mixture was extracted with ethyl acetate (3 × 20 mL) and with CH2Cl2 (3 × 20 mL). The combined organic layers were dried (K2CO3). The solvent was removed in vacuo, and the residue was purified by flash column chromatography (Ø 2 cm, NH3 (16 mL) + MeOH (100 mL) + CH2Cl2 (ad 2000 mL), length 18 cm, fraction 8 mL, Rf = 0.12). The eluent was prepared as follows: In a 2 L volumetric flask, MeOH (100 mL) and NH3 (16 mL) were mixed, CH2Cl2 (1.5 L) was added, and the mixture was gently swirled. The mixture cooled down by itself. It was warmed up to rt and then diluted with CH2Cl2 to a total volume of 2 L. Colorless solid, mp 50–51 °C, yield 53 mg (81%). C18H27NO2, Mr = 289.4. MS (EI): m/z [%] = 288 (M-1, 10), 84 (CH2=N(CH2-CH2)2, 100).
IR (neat): ͠ν [cm−1] = 2925, 2859, 2786 (C-H), 1105 (C-O), 762, 701 (arom. monosubst.).
1H NMR (CDCl3): δ [ppm] = 1.38–1.85 (m, 12 H, 5-Hax+eq, diox-(CH2)3, N(CH2-CH2)2), 2.47 (t, J = 7.5 Hz, 2 H, CH2-Npyrrolidine), 2.50–2.55 (m, 4 H, N-(CH2-CH2)2), 3.80–3.86 (m, 1 H, 4-Hax), 3.95 (td, J = 12.2/2.6 Hz, 1 H, 6-Hax), 4.24 (ddd, J = 11.3/4.9/1.0 Hz, 1 H, 6-Heq), 5.49 (s, 1 H, 2-Hax), 7.29–7.38 (m, 3 H, Ar-H), 7.48–7.50 (m, 2 H, Ar-H). HPLC (method ACN): purity 98.0%, tR = 15.07 min.
  • 1-[4-(trans-2-Ethyl-2-phenyl-1,3-dioxan-4-yl)butyl]pyrrolidine (19b).
Pharmaceuticals 18 01300 i030
Mesylate 15b (100 mg, 0.29 mmol) was dissolved in dry acetonitrile (molecular sieves 3 Å, 10 mL). K2CO3 (120 mg, 0.87 mL) and freshly distilled pyrrolidine (46 μL, 0.435 mmol) were added, and the mixture was heated to reflux for 17 h. For workup, the solvent was removed in vacuo, and the residue was transferred into a separatory funnel with water and a small amount of ethyl acetate. The pH value was adjusted to 9–10 with 2 M NaOH. The mixture was extracted with ethyl acetate (3 × 20 mL). The combined organic layers were washed with brine (1 × 20 mL) and dried (K2CO3). The solvent was removed in vacuo, and the residue was purified by flash column chromatography (Ø 2 cm, cyclohexane:ethyl acetate = 8:2 + 0.5% N,N-dimethylethanamine, length 18 cm, fraction 10 mL, Rf = 0.11 (cyclohexane:ethyl acetate = 7:3 + 0.5% N,N-dimethylethanamine)). Colorless oil, yield 86 mg (94%). C20H31NO2, Mr = 317.5. MS (EI): m/z [%] = 318 (M + H, 34), 84 (CH2=N(CH2-CH2)2, 100). IR (neat): ͠ν [cm−1] = 2930, 2866, 2784 (C-H), 757, 704 (arom. monosubst.). 1H NMR (CDCl3): δ [ppm] = 0.79 (t, J = 7.5 Hz, 3 H, diox-CH2-CH3), 1.25–1.29 (m, 1H, 5-Heq), 1.33–1.83 (m, 11 H, 5-Hax, diox-(CH2)3, N(CH2-CH2)2), 1.73 (q, J = 7.5 Hz, 2 H, diox-CH2-CH3), 2.45–2.49 (m, 2 H, CH2-Npyrrolidine), 2.50–2.55 (m, 4 H, N(CH2-CH2)2), 3.60–3.67 (m, 1 H, 4-Hax), 3.73–3.79 (m, 1 H, 6-Hax), 3.87 (ddd, J = 11.3/5.0/1.3 Hz, 1 H, 6-Heq), 7.26–7.40 (m, 5 H, Ar-H). HPLC (method ACN): purity 99.7%, tR = 17.47 min.
  • 3-Hydroxy-1-phenyl-4-(cis-2-phenyl-1,3-dioxan-4-yl)butan-1-one (20a).
Pharmaceuticals 18 01300 i031
Under N2 atmosphere, iPr2NH (1.12 mL, 8 mmol) was dissolved in THF abs. (12 mL) and cooled to −78 °C. A solution of n-butyllithium (1.6 M in n-hexane, 5 mL, 8 mmol) was added dropwise and the mixture was stirred for 15 min at −78 °C. Acetophenone (1.21 mL, 10.4 mmol), dissolved in THF abs. (6 mL), was added dropwise. 5 min later, a solution of the aldehyde 9a (827 mg, 4 mmol) in THF abs. (6 mL) was added, and the reaction mixture was stirred for 45 min at −78 °C. Saturated aqueous solution of NH4Cl (25 mL) was added, and the cooling bath was removed, allowing the mixture to warm up. At rt, the reaction mixture was diluted with water (30 mL) and extracted with ethyl acetate (3 × 30 mL). The combined organic layers were washed with brine (1 × 30 mL), dried (K2CO3) and the solvent was removed in vacuo. The residue was purified by flash column chromatography (Ø 7 cm, cyclohexane:ethyl acetate = 7:3, length 20 cm, fraction 65 mL, Rf = 0.15) to give a solid, which was recrystallized from cyclohexane with a few drops of ethyl acetate. Colorless crystals, mp 82–83 °C, yield 905 mg (69%). C20H22O4 (Mr = 326.4). MS (ESI): m/z [%] = 675 (2 × M + Na, 100). IR (neat): ͠ν [cm−1] = 3492 (O-H) 2923, 2858 (C-H), 1676 (C=O), 1099 (C-O), 749, 689 (arom. monosubst.). 1H NMR (CDCl3): δ [ppm] = 1.56 (dtd, J = 13.3/2.4/1.3 Hz, 0.6H, 5-Heq), 1.62 (dtd, J = 13.3/2.3/1.4 Hz, 0.4H, 5-Heq), 1.81–2.01 (m, 3H, 5-Hax and diox-CH2-CH-OH), 3.09 (dd, J = 17.7/8.8 Hz, 0.6H, CH2-C=O), 3.15 (dd, J = 17.3/4.5 Hz, 0.4H, CH2-C=O), 3.25 (dd, J = 17.7/2.9 Hz, 0.6H, CH2-C=O), 3.26 (dd, J = 17.3/7.7 Hz, 0.4H, CH2-C=O), 3.56–3.57 (m, 1H, CHOH), 4.01 (td, J = 11.8/2.5 Hz, 1H, 6-Hax), 4.20–4.20 (m, 1H, CHOH), 4.29 (ddd, J = 11.4/5.0/1.1 Hz, 1H, 6-Heq), 4.49–4.60 (m, 1 H, 4-Hax), 5.57 (s, 1 H, 2-Hax), 7.32–7.60 (m, 8 H, Ar-H), 7.92–7.96 (m, 2 H, Ar-H). The ratio of diastereomer is 60: 40. HPLC (method ACN): purity 99.6%, tR = 19.87 min.
  • 4-(trans-2-Ethyl-2-phenyl-1,3-dioxan-4-yl)-3-hydroxy-1-phenylbutan-1-one (20b).
Pharmaceuticals 18 01300 i032
Under N2 atmosphere, iPr2NH (2.05 mL, 14.52 mmol) was dissolved in THF abs. (22 mL) and cooled to −78 °C. A solution of n-butyllithium (1.6 M in n-hexane, 9.10 mL, 14.52 mmol) was added dropwise and the mixture was stirred for 15 min at −78 °C. Acetophenone (2.20 mL, 18.88 mmol), dissolved in THF abs. (11 mL), was added dropwise. 5 min later, a solution of the aldehyde 9b (1.70 g, 7.26 mmol) in THF abs. (11 mL) was added, and the reaction mixture was stirred for 80 min at −78 °C. Saturated aqueous solution of NH4Cl (50 mL) was added, and the cooling bath was removed, allowing the mixture to warm up. At rt, the reaction mixture was diluted with water (enough to dissolve all solids) and extracted with ethyl acetate (3 × 30 mL). The combined organic layers were washed with brine (1 × 30 mL), dried (K2CO3) and the solvent was removed in vacuo. Purification by flash column chromatography (Ø 6 cm, cyclohexane:ethyl acetate = 9:1, length 17 cm, fraction 65 mL, Rf = 0.09) gave a mixture of two diastereomers. Colorless solid, mp 122–129 °C, yield 2.16 g (84%). One of the diastereomers was isolated by recrystallisation from cyclohexane:ethyl acetate 95:5. Colorless crystals, mp 132 °C, yield 61% related to the fc isolated product. C22H26O4, Mr = 354.4. MS (EI): m/z [%] = 377 (M + Na, 100). IR (neat): ͠ν [cm−1] = 3530 (O-H), 3060, 2956, 2882 (C-H), 1669 (C=O), 752, 688 (arom. monosubst.). 1H NMR (CDCl3): δ [ppm] = 0.79 (t, J = 7.5 Hz, 3 × 0.7 H, diox-CH2-CH3), 0.80 (t, J = 7.5 Hz, 3 × 0.7 H, diox-CH2-CH3), 1.26–1.39 (m, 1 H, 5-Heq), 1.71–1.89 (m, 5 H, diox-CH2-CH3, 5-Hax, diox-CH2-COH), 3.12 (dd, J = 17.0/5.3 Hz, 0.3 H, CH2-CO), 3.15 (dd, J = 17.7/8.3 Hz, 0.7 H, CH2-CO), 3.26 (dd, J = 17.6/3.5 Hz, 0.7 H, CH2-CO), 3.29 (dd, J = 17.0/7.0 Hz, 0.3 Hz, CH2-CO), 3.58–3.59 (m, 1 H, O-H), 3.77–3.92 (m, 2 H, 6-Hax+eq), 4.03–4.13 (m, 1 H, 4-Hax), 4.53–4.62 (m, 0.3 H, CH-OH), 4.64–4.73 (m, 0.7 H, CH-OH), 7.28–7.63 (m, 8 H, Ar-H), 7.97–8.00 (m, 2 H, Ar-H). The ratio of diastereomers is 70:30. HPLC (method ACN): purity 95.7%, tR = 21.00 min.
  • (2Z)-1-Phenyl-4-(cis-2-phenyl-1,3-dioxan-4-yl)but-2-en-1-one ((Z)-21a) and(2E)-1-Phenyl-4-(cis-2-phenyl-1,3-dioxan-4-yl)but-2-en-1-one ((E)-21a) and (3E)-1-Phenyl-4-(cis-2-phenyl-1,3-dioxan-4-yl)but-3-en-1-one (A).
Pharmaceuticals 18 01300 i033
Under N2 atmosphere, the β-hydroxyketone 20a (600 mg, 1.84 mmol) was dissolved in CH2Cl2 abs. (9 mL) and treated with NEt3 (1.54 mL, 11.04 mmol). The mixture was cooled to 0 °C. A solution of methanesulfonyl chloride (280 μL, 3.68 mmol) in CH2Cl2 abs. (1 mL) was added dropwise and the reaction mixture was stirred for 2 h at 0 °C. Water (10 mL) was added, and the organic layer was separated. The aqueous layer was extracted with CH2Cl2 (3 × 10 mL). The combined organic layers were washed with 1 M HCl (2 × 20 mL) and with saturated aqueous solution of NaHCO3 (2 × 20 mL) and were dried (K2CO3). The solvent was removed in vacuo, and the residue was purified by flash column chromatography (Ø 4 cm, cyclohexane:ethyl acetate = 9:1, length 18 cm, fraction 30 mL).
(Z)-21a (Rf = 0.15): Colorless oil, yield 27 mg (2.3%). C20H20O3, Mr = 308.4. 1H NMR (CDCl3): δ [ppm] = 1.56–1.62 (m, 1 H, 5-Heq), 1.92 (qd, J = 12.5/5.0 Hz, m, 1 H, 5-Hax), 2.87–2.95 (m, 1 H, CH2-CH=CH), 3.06 (dddd, J = 15.8/7.4/4.3/1.7 Hz, 1 H, CH2-CH=CH), 3.98 (td, J = 12.0/2.7 Hz, 1 H, 6-Hax), 4.01–4.08 (m, 1 H, 4-Hax), 4.28 (ddd, J = 11.5/4.1/1.0 Hz, 1 H, 6-Heq), 5.54 (s, 1 H, 2-Hax), 6.57 (dt, J = 11.7/7.2 Hz, 1 H, CH=CH-CO), 6.95 (dt, 11.7/1.6 Hz, 1 H, CH=CH-C=O), 7.33–7.58 (m, 8 H, Ar-H), 7.94–7.96 (m, 2 H, Ar-H).
(E)-21a (Rf = 0.08): Colorless oil, yield 474 mg (84%). C20H20O3, Mr = 308.4. MS (ESI): m/z [%] = 331 (M + Na, 27), 639 (2 × M + Na, 100), 655 (2 × M + K, 76). IR (neat): ν [cm−1] = 3062, 2921, 2853 (C-H), 1669 (C=O), 1620 (C=C), 1100 (C-O), 749, 594 (arom. monosubst.). 1H NMR (CDCl3): δ [ppm] = 1.61 (dtd, J = 13.3/2.5/1.4 Hz, 1 H, 5-Heq), 1.90 (dddd, J = 13.2/12.4/11.3/5.1 Hz, 1 H, 5-Hax), 2.59 (dddd, J = 14.9/6.8/5.6/0.9 Hz, 1 H, CH2-CH=CH), 2.72 (dtd, J = 15.0/6.9/1.2 Hz, 1 H, CH2-CH=CH), 3.97 (td, J = 12.0/2.6 Hz, 1 H, 6-Hax), 4.03–4.09 (m, 1 H, 4-Hax), 4.30 (ddd, J = 11.5/5.0/1.3 Hz, 1 H, 6-Heq), 5.52 (s, 1 H, 2-Hax), 6.91 (dt, J = 15.5/1.0, 1 H, CH=CH-CO), 7.10 (dt, J = 15.4/7.1 Hz, 1 H, CH=CH-CO), 7.31–7.59 (m, 8 H, Ar-H), 7.92–7.94 (m, 2 H, Ar-H). HPLC (method ACN): purity 96.4%, tR = 21.63 min.
A (Rf = 0.12): Colorless oil, yield 29 mg (2.6%). C20H20O3, Mr = 308.4. 1H NMR (CDCl3): δ [ppm] = 1.63 (dtd, J = 13.3/2.5/1.5 Hz, 1 H, 5-Heq), 1.97 (dddd, J = 13.1/12.4/11.4/5.0 Hz, 1 H, 5-Hax), 3.76–3.79 (m, 2 H, CH2-CO), 4.00 (td, J = 12.0/2.5 Hz, 1 H, 6-Hax), 4.29 (ddd, J = 11.3/4.9/1.1 Hz, 1 H, 6-Heq), 4.40–4.45 (m, 1 H, 4-Hax), 5.57 (s, 1 H, 2-Hax), 5.76 (ddt, J = 15.7/6.1/3.1 Hz, 1 H, CH=CH-CH2-CO), 6.08 (dtd, J = 15.5/6.9/1.1 Hz, 1 H, CH=CH-CH2-CO), 7.30–7.60 (m, 8 H, Ar-H), 7.95–7.97 (m, 2 H, Ar-H).
  • (2Z)-4-(trans-2-Ethyl-2-phenyl-1,3-dioxan-4-yl)-1-phenylbut-2-en-1-one ((Z)-21b) and (2E)-4-(trans-2-ethyl-2-phenyl-1,3-dioxan-4-yl)-1-phenylbut-2-en-1-one ((E)-21b).
Pharmaceuticals 18 01300 i034
Under N2 atmosphere, the β-hydroxyketone 20b (1.776 g, 5.0 mmol) was dissolved in CH2Cl2 abs. (20 mL) and treated with NEt3 (4.17 mL, 30.1 mmol). The mixture was cooled to 0 °C. A solution of methanesulfonyl chloride (0.78 mL, 10.0 mmol) in CH2Cl2 abs. (2 mL) was added dropwise and the reaction mixture was stirred for 2.5 h at 0 °C. Water (30 mL) was added, and the organic layer was separated. The aqueous layer was extracted with CH2Cl2 (3 × 20 mL). The combined organic layers were washed with 1 M HCl (2 × 30 mL) and with saturated aqueous solution of NaHCO3 (2 × 30 mL) and were dried (K2CO3). The solvent was removed in vacuo. Purification by flash column chromatography (Ø 5.5 cm, cyclohexane:ethyl acetate = 9.5:0.5, length 17 cm, fraction 65 mL) gave a mixture of (Z)-21b (Rf = 0.22) and (E)-21b (Rf = 0.15). Colorless oil, yield 1.567 g (93%). C22H24O3, Mr = 336.4. MS (ESI): m/z [%] = 337 (M + H, 45), 359 (M + Na, 100). IR (neat): ͠ν [cm−1] = 3059, 2928, 2875 (C-H), 1671 (C=O), 1622 (C=C), 758, 695 (arom. monosubst.). 1H NMR (CDCl3): δ [ppm] = 0.81 (t, J = 7.5 Hz, 3 H, diox-CH2-CH3), 1.33–1.37 (m, 1 H, 5-Heq), 1.75 (q, J = 7.4 Hz, 2 H, diox-CH2-CH3), 1.72–1.83 (m, 1 H, 5-Hax), 3.45–2.52 (m, 0.87 H, CH2-CH=CH), 2.61 (dtd, J = 14.3/7.2/1.1 Hz, 0.87 H, CH2-CH=CH), 2.97–2.87 (m, 0.13 H, CH2-CH=CH), 2.90–2.97 (m, 0.13 H, CH2-CH=CH), 3.80 (td, J = 11.6/2.5 Hz, 1 H, 6-Hax), 3.84–3.90 (m, 1 H, 4-Hax), 3.91 (ddd, J = 11.5/5.0/1.4 Hz, 1 H, 6-Heq), 6.61 (dt, 11.7/7.2 Hz, 0.13 H, CH=CH-CO), 6.96 (dt, J = 15.5/1.1 Hz, 0.87 H, CH=CH-CO) 6.94–7.00 (m, 0.13 H, CH=CH-CO), 7.10 (dt, J = 15.3/7.2 Hz, 0.87 H, CH=CH-CO), 7.27–7.60 (m, 8 H, Ar-H), 7.94–7.97 (m, 2 H, Ar-H). The 1H NMR spectrum shows diastereomers (E)-21b:(Z)-21b in the ratio 87:13. HPLC (method ACN): 86.5%, tR = 23.3 min ((E)-21b), 11.5%, tR = 23.6 min ((Z)-21b).
  • 1-Phenyl-4-(cis-2-phenyl-1,3-dioxan-4-yl)butan-1-one (22a).
Pharmaceuticals 18 01300 i035
21a (250 mg, 0.81 mmol) was dissolved in methanol abs. (25 mL). Pd/C (10% Pd, 25 mg, 10% m/m) and ammonium formate (101 mg, 1.62 mmol) were added. After purging with N2, the mixture was heated to reflux for 2 h, then cooled down to rt and filtered through Celite®. The solvent was removed in vacuo, and the residue was purified by flash column chromatography (Ø 3 cm, cyclohexane:ethyl acetate = 9:1, length 18 cm, fraction 20 mL, Rf = 0.33 (cyclohexane:ethyl acetate = 8:2)). Colorless solid, mp 68.3 °C, yield 206 mg (82%). C20H22O3, Mr = 310.4. MS (ESI): m/z [%] = 643 (2 × M + Na, 100). IR (neat): ͠ν [cm−1] = 2916, 2855 (C-H), 1672 (C=O), 1093 (C-O), 756, 691 (arom. monosubst.). 1H NMR (CDCl3): δ [ppm] = 1.53–1.58 (m, 1 H, 5-Heq), 1.62–2.02 (m, 5 H, diox-CH2-CH2, 5-Hax), 3.04 (t, J = 7.2 Hz, 2 H, CH2-CO-Ph), 3.87–3.93 (m, 1 H, 4-Hax), 3.97 (td, J = 11.9/2.6 Hz, 1 H, 6-Hax), 4.27 (ddd, J = 11.4/4.9/1.1 Hz, 1 H, 6-Heq), 5.52 (s, 1 H, 2-Hax), 7.29–7.57 (m, 8H, Ar-H), 7.94–7.96 (m, 2 H, Ar-H). HPLC (method MeOH): purity 98.8%, tR = 18.61 min.
  • 4-(trans-2-Ethyl-2-phenyl-1,3-dioxan-4-yl)-1-phenylbutan-1-one (22b).
Pharmaceuticals 18 01300 i036
The α,β-unsaturated ketone 21b (mixture of (E)-21b and (Z)-21b, 200 mg, 0.59 mmol) was dissolved in methanol abs. (10 mL). Pd/C (10% Pd, 20 mg, 10% m/m) and ammonium formate (73 mg, 1.18 mmol) were added. After purging with N2, the mixture was heated to reflux for 2 h, then cooled down to rt and filtered through Celite®. The solvent was removed in vacuo, and the residue was adsorbed on silica gel and given on the column (Ø 2 cm, cyclohexane:ethyl acetate = 9.5:0.5, length 18 cm, fraction 10 mL, Rf = 0.21). Colorless solid, mp 78–79 °C, yield 149 mg (75%). C22H26O3, Mr = 338.4. MS (ESI): m/z [%] = 361 (M + Na, 100). IR (neat): ͠ν [cm−1] = 3060, 2940, 2871 (C-H), 1682 C=O), 756, 705 (arom. monosubst.). 1H NMR (CDCl3): δ [ppm] = 0.79 (t, J = 7.5 Hz, 3 H, diox-CH2-CH3), 1.27–1.32 (m, 1 H, 5-Heq), 1.38–1.61 (m, 3 H, 5-Hax, diox-CH2-CH2-CH2), 1.63 (q, J = 7.3 Hz, 2 H, diox-CH2-CH3), 1.70–1.96 (m, 2 H, diox-CH2-CH2-CH2), 2.93 (t, J = 7.3 Hz, 2 H, CH2-CO), 3.57–3.63 (m, 1 H, 4-Hax), 3.68 (td, J = 12.0/2.7 Hz, 1 H, 6-Hax), 3.77 (ddd, J = 11.3/5.1/1.3 Hz, 1 H, 6-Heq), 7.15–7.48 (m, 8 H, Ar-H), 7.86–7.88 (m, 2 H, Ar-H). HPLC (method ACN): purity 99.4%, tR = 23.12 min.
  • N-Hydroxy-1-phenyl-4-(cis-2-phenyl-1,3-dioxan-4-yl)butan-1-imine (23a).
Pharmaceuticals 18 01300 i037
The saturated ketone 22a (180 mg, 0.58 mmol) and hydroxylamine-HCl (180 mg, 2.6 mmol) were suspended in dry ethanol (molecular sieves 3 Å, 20 mL). NaOAc (95 mg, 1.16 mmol) was added, and the mixture was heated to reflux for 7 h. Ethanol was removed under reduced pressure, and the residue was transferred into a separatory funnel with CH2Cl2 (20 mL) and water (20 mL). The layers were separated, and the aqueous layer was extracted with CH2Cl2 (2 × 10 mL). The combined organic layers were dried (K2CO3). The solvent was removed in vacuo giving the crude product, which was purified by flash column chromatography (Ø 3 cm, cyclohexane:ethyl acetate = 9:1, length 19 cm, fraction 20 mL, Rf = 0.05). Colorless solid, mp 86 °C, yield 147 mg (78%). C20H23NO3, Mr = 325.4. MS (ESI): m/z [%] = 325 (M, 100), 348 (M + Na, 75), 364 (M + K, 30). IR (neat): ͠ν [cm−1] = 3235 (O-H), 3065, 2925, 2850 (C-H), 1104 (C-O), 748, 693 (arom. monosubst). 1H NMR (CDCl3): δ [ppm] = 1.48–1.52 (m, 1 H, 5-Heq), 1.59–1.85 (m, 5 H, 5-Hax, diox-CH2-CH2), 2.81–2.92 (m, 2 H, CH2-C=N), 3.83–3.88 (m, 1 H, 4-Hax), 3.94 (td, J = 12.1/2.5 Hz, 1 H, 6-Hax), 4.25 (dd broad, J = 11.3/4.8 Hz, 1 H, 6-Heq), 5.49 (s, 1 H, 2-Hax), 7.30–7.37 (m, 6 H, Ar-H), 7.46 (dd, J = 7.7/1.7 Hz, 2 H, N=C-Ar-Hortho), 7.60–7.62 (m, 2 H, diox-Ar-Hortho), 8.45 (s, 1 H, C=N-O-H). HPLC (method MeOH): purity 98.5%, tR = 17.83 min.
  • 1-Phenyl-4-(cis-2-phenyl-1,3-dioxan-4-yl)butan-1-amine (24a).
Pharmaceuticals 18 01300 i038
(a) Reduction in oxime 23a
The oxime 23a (110 mg, 0.34 mmol) was dissolved in THF abs. (10 mL) and LiAlH4 (64.5 mg, 1.7 mmol) was added. The mixture was stirred for 19 h at rt and then heated to reflux for 4 h. After cooling to rt, ice-cooled water (10 mL) was added dropwise. When H2 formation was finished, the mixture was transferred into a separatory funnel, water (20 mL) and brine (10 mL) were added, and the mixture was extracted with CH2Cl2 (3 × 20 mL). The solvent was removed in vacuo, and the residue was purified by flash column chromatography (Ø 2 cm, cyclohexane:ethyl acetate = 6:4 + 1.5% N,N-dimethylethanamine, length 17 cm, fraction 10 mL, Rf = 0.11). Colorless oil, yield 56 mg (53%). HPLC (method ACN): purity 92%, tR = 16.76 min.
(b) Reductive amination of saturated ketone 22a
The saturated ketone 22a (60 mg, 0.19 mmol) and NH4OAc (223 mg, 2.90 mmol) were dissolved in methanol abs. (12 mmol) using ultrasound. NaBH3CN (95%, 64 mg, 0.97 mmol) was added, and the mixture was heated to reflux for 22 h. Water (30 mL) was added, and the pH value was adjusted to 10–11 with 5 M NaOH. The aqueous layer was extracted with CH2Cl2 (3 × 25 mL). The combined organic layers were dried (K2CO3). The solvent was removed in vacuo, and the residue was purified by flash column chromatography (Ø 2 cm, cyclohexane:ethyl acetate = 7:3 + 1% N,N-dimethylethanamine, length 18 cm, fraction 10 mL, Rf = 0.04). Colorless oil, yield 33.5 mg (56%). HPLC (method ACN): purity 92%, tR = 16.76 min. C20H25NO2, Mr = 311.4. MS (ESI): m/z [%] = 312 (M + H, 100). IR (neat): ͠ν [cm−1] = 3032, 2926, 2851 (C-H), 1103 (C-O), 750, 697 (arom. monosubst.). 1H NMR (CDCl3): δ [ppm] = 1.25–1.84 (m, 8 H, diox-(CH2)3, 5-Hax+eq), 3.74–3.84 (m, 1 H, 4-Hax), 3.87–3.97 (m, 2 H, 6-Hax, Ph-CH-N), 4.25 (dd broad, J = 11.3/5.0 Hz, 1 H, 6-Heq), 5.47 (s, 0.5 H, 2-Hax), 5.48 (s, 0.5 H, 2-Hax), 7.21–7.39 (m, 8 H, Ar-H), 7.43–7.43 (m, 2 H, Ar-H). Signals for the NH2 protons are not seen in the spectrum. HPLC (method ACN): purity 97.2%, tR = 16.76 min.
  • 4-(trans-2-Ethyl-2-phenyl-1,3-dioxan-4-yl)-1-phenylbutan-1-amine (24b).
Pharmaceuticals 18 01300 i039
The saturated ketone 22b (100 mg, 0.30 mmol) and NH4OAc (347 mg, 4.5 mmol) were dissolved in methanol abs. (20 mL) using ultrasound. NaBH3CN (95%, 64 mg, 0.97 mmol) was added, and the mixture was heated to reflux for 24 h, using a reflux apparatus equipped with a rubber balloon. Water (30 mL) was added, and the pH value was adjusted to 10–11 with 5 M NaOH. The aqueous layer was diluted with water and extracted with CH2Cl2 (3 × 25 mL). The combined organic layers were dried (K2CO3). The solvent was removed in vacuo, and the residue was purified by flash column chromatography (Ø 2 cm, CH2Cl2:methanol = 9.5:0.5, length 18 cm, fraction 10 mL, Rf = 0.07). Colorless oil, yield 46 mg (45%). C22H29NO2, Mr = 339.5. MS (EM, APCI): m/z = calculated for C22H30NO2 340.2271, found 340.2302. IR (neat): ͠ν [cm−1] = 2930, 2865 (C-H), 757, 701 (arom. monosubst.). 1H NMR (CDCl3): δ [ppm] = 0.77 (t, J = 7.5 Hz, 3 H, diox-CH2-CH3), 1.20–1.24 (m, 1 H, 5-Heq), 1.25–1.74 (m, 9 H, diox-CH2-CH3, diox-(CH2)3, 5-Hax), 1.95 (s broad, 2 H, NH2), 3.54–3.62 (m, 1 H, 4-Hax), 3.73 (t broad, J = 12.0 Hz, 1 H, 6-Hax), 3.84 (dd broad, J = 11.4/5.0 Hz, 1 H, 6-Heq), 3.93 (t broad, J = 6.9 Hz, 1 H, Ph-CH-N), 7.22–7.38 (m, 10 H, Ar-H). HPLC (method ACN): purity 97.3%, tR = 18.03 min.
  • N-Methyl-1-phenyl-4-(cis-2-phenyl-1,3-dioxan-4-yl)butan-1-amine (25a).
Pharmaceuticals 18 01300 i040
The saturated ketone 22a (100 mg, 0.32 mmol) was dissolved in CH2Cl2 abs. (7 mL). Methylamine (2 M solution in THF, 0.24 mL, 0.48 mmol) and NaBH(OAc)3 (95%, 214 mg, 0.96 mmol) were added. The mixture was heated to reflux, using a reflux apparatus equipped with a rubber balloon to avoid loss of gaseous amine. Additional methylamine (2 M solution in THF, each 0.24 mL, 0.48 mmol) was added after 2 h, 3.5 h, 20 h, 24 h. Additional NaBH(OAc)3 (71.4 mg, 0.32 mmol) was added after 20 h. After 26 h, 1 M NaOH (15 mL) was added, and the layers were separated. The aqueous layer was extracted with CH2Cl2 (3 × 10 mL) and ethyl acetate (3 × 10 mL). The CH2Cl2 fraction and the ethyl acetate fraction were washed with brine (1 × 20 mL) separately, then combined and dried (K2CO3). The solvent was removed in vacuo, and the residue was purified by flash column chromatography (Ø 2 cm, cyclohexane:ethyl acetate = 7:3 + 3% N,N-dimethylethanamine, length 18.5 cm, fraction 10 mL, Rf = 0.1). Colorless oil, yield 34 mg (33%). C21H27NO2, Mr = 325.4. MS (EI): m/z [%] = 325 (M, 2), 120 (Ph-CH=NH-CH3, 100). IR (neat): ͠ν [cm−1] = 2932, 2848, 2788 (C-H), 1103 (C-O), 750, 697 (arom. monosubst.). 1H NMR (CDCl3): δ [ppm] = 1.20–1.82 (m, 9 H, diox-(CH2)3, NH, 5-Hax+eq), 2.26 (s, 3 H, N-CH3), 3.45 (ddd, J = 8.2/6.1/2.4 Hz, 1 H, Ph-CH-N), 3.72–3.80 (m, 1 H, 4-Hax), 3.88–3.95 (m, 1H, 6-Hax), 4.23 (dd broad, J = 11.7/4.6 Hz, 1 H, 6-Heq), 5.45 (s, 0.5 H, 2-Hax), 5.46 (s, 0.5 H, 2-Hax), 7.23–7.37 (m, 8 H, Ar-H), 7.43–7.47 (m, 2 H, Ar H). HPLC (method MeOH): purity 98.1%, tR = 15.73 min.
  • 4-(trans-2-Ethyl-2-phenyl-1,3-dioxan-4-yl)-N-methyl-1-phenylbutan-1-amine (25b).
Pharmaceuticals 18 01300 i041
The saturated ketone 22b (80 mg, 0.24 mmol) was dissolved in CH2Cl2 abs. (7 mL). Methylamine (2 M solution in THF, 0.36 mL, 0.72 mmol) and NaBH(OAc)3 (95%, 161 mg, 0.72 mmol) were added. The mixture was heated to reflux, using a reflux apparatus equipped with a rubber balloon to avoid loss of gaseous amine. Additional NaBH(OAc)3 (53 mg, 0.24 mmol) was added after 9 h. Additional methylamine (2 M solution in THF, each 0.24 mL, 0.48 mmol) was added after 4.5 h, 9 h, 24 h. After 28 h, 1 M NaOH (15 mL) was added. The aqueous layer was diluted with water (ca. 10 mL) and then extracted with CH2Cl2 (3 × 10 mL). The combined organic layers were washed with brine and dried (K2CO3). The solvent was removed in vacuo, and the residue was purified by flash column chromatography (Ø 2 cm, cyclohexane:ethyl acetate = 9.5:0.5 + 2% N,N-dimethylethanamine, length 17.5 cm, fraction 10 mL, Rf = 0.21). Colorless oil, yield 46 mg (55%). C23H31NO2, Mr = 353.5. MS (EM, APCI): m/z = calculated for C23H32NO2 354.2428, found 354.2455. IR (neat): ͠ν [cm−1] = 2932, 2865, 2788 (C-H), 757, 701 (arom. monosubst.). 1H NMR (CDCl3): δ [ppm] = 0.76 (t, J = 7.5 Hz, 3 H, diox-CH2-CH3), 1.18–1.78 (m, 11 H, diox-CH2-CH3, 5-Hax+eq, diox-(CH2)3, N-H), 2.28 (s, 0.5 × 3 H, N-CH3), 2.29 (0.5 × 3 H, N-CH3), 3.45–3.49 (m, 1 H, Ph-CH-N), 3.52–3.59 (m, 1 H, 4-Hax), 3.72 (t broad, J = 12.0 Hz, 1 H, 6-Hax), 3.83 (dd broad, J = 11.3/5.3 Hz, 1 H, 6-Heq), 7.22–7.37 (m, 10 H, Ar-H). HPLC (method ACN): purity 97.9%, tR = 18.36 min.
  • N-Benzyl-1-phenyl-4-(cis-2-phenyl-1,3-dioxan-4-yl)butan-1-amine (26a).
Pharmaceuticals 18 01300 i042
The saturated ketone 22a (80 mg, 0.26 mmol) and freshly distilled benzylamine (42 μL, 0.39 mmol) were dissolved in CH2Cl2 abs. (5 mL). NaBH(OAc)3 (95%, 174 mg, 0.78 mmol) was added, and the mixture was heated to reflux. After 24 h, additional NaBH(OAc)3 (95%, 60 mg, 0.26 mmol) and benzylamine (42 μL, 0.39 mmol) were added, and the mixture was heated to reflux for another 8 h. Then, 1 M NaOH (15 mL) was added, and the aqueous layer was extracted with CH2Cl2 (3 × 10 mL). The combined organic layers were washed with brine and dried (K2CO3). The solvent was removed in vacuo, and the residue was purified by flash column chromatography (Ø 2.5 cm, cyclohexane:ethyl acetate = 9:1 + 0.5% N,N-dimethylethanamine, length 18 cm, fraction 10 mL, Rf = 0.06). Colorless oil, yield 49 mg (47%). C27H31NO2, Mr = 401.5. MS (ESI): m/z [%] = 402 (M + H, 100). IR (neat): ͠ν [cm−1] = 3029, 2930, 2848 (C-H), 1104 (C-O), 748, 696 (arom. monosubst.). 1H NMR (CDCl3): δ [ppm] = 1.16–1.79 (m, 9 H, 5-Hax+eq, diox-(CH2)3, N-H), 3.53 (d, J = 13.2 Hz, 1 H, N-CH2-Ph), 3.65 (d, J = 13.5 Hz, 1 H, N-CH2-Ph), 3.61–3.64 (m, 1 H, Ph-CH-N), 3.71–3.79 (m, 1 H, 4-Hax), 3.91 (td, J = 12.4/2.1 Hz, 1 H, 6-Hax), 4.23 (dd, J = 11.4/4.8 Hz, 1 H, 6-Heq), 5.45 (s, 0.5 H, 2-Hax), 5.46 (s, 0.5 H, 2-Hax), 7.23–7.37 (m, 13 H, Ar-H), 7.43–7.46 (m, 2 H, Ar-H). A signal for the NH proton is not seen in the spectrum. 13C NMR (CDCl3): δ [ppm] = 21.8 (0.5 C, diox-CH2-CH2), 21.9 (0.5 C, diox-CH2-CH2), 31.4 (0.5 C, C-5), 31.5 (0.5 C, C-5), 36.0 (0.5 C, diox-CH2), 36.1 (0.5 C, diox-CH2), 38.1 (1 C, diox-(CH2)2-CH2), 51.5 (1 C, Ph-CH2-N), 62.6 (1 C, Ph-CH-N-Bz), 67.2 (1 C, C-6), 77.1 (1 C, C-4), 101.2 (1 C, C-2), 126.3–128.8 (15 C, Ar), 139.0 (1 C, Arquart.), 140.3 (1 C, Arquart.), 143.8 (1 C, Arquart.). HPLC (method ACN): purity 97.6%, tR = 20.05 min.
  • N-Benzyl-4-(trans-2-ethyl-2-phenyl-1,3-dioxan-4-yl)-1-phenylbutan-1-amine (26b).
Pharmaceuticals 18 01300 i043
The saturated ketone 22b (70 mg, 0.21 mmol) and freshly distilled benzylamine (69 μL, 0.63 mmol) were dissolved in CH2Cl2 abs. (5 mL). NaBH(OAc)3 (95%, 140 mg, 0.63 mmol) was added, and the mixture was heated to reflux for a total of 3 d. Additional NaBH(OAc)3 (95%, 47 mg, 0.21 mmol) was added after 24 h. Additional benzylamine (each 69 μL, 0.63 mmol) was added after 24 h and 2.5 d. After 3 d, 1 M NaOH (15 mL) was added, the organic layer was separated, and the aqueous layer was extracted with CH2Cl2 (3 × 10 mL). The combined organic layers were dried (K2CO3). The solvent was removed in vacuo, and the residue was purified by flash column chromatography (Ø 3 cm, cyclohexane:ethyl acetate = 9:1, length 16 cm, fraction 10 mL, Rf = 0.09).
Colorless oil, yield 75 mg (83%). C29H35NO2, Mr = 429.6. MS (ESI): m/z [%] = 430 (M + H, 100). IR (neat): ͠ν [cm−1] = 3026, 2928, 2865 (C-H), 757, 699 (arom. monosubst.). 1H NMR (CDCl3): δ [ppm] = 0.76 (t, J = 7.5 Hz, 3 H, diox-CH2-CH3), 1.18 (d broad, J = 12.8 Hz, 1 H, 5-Heq), 1.20–1.81 (m, 7 H, diox-(CH2)3, 5-Hax), 1.70 (q, J = 7.5 Hz, 0.5 × 2 H, diox-CH2-CH3), 1.70 (q, J = 7.5 Hz, 0.5 × 2 H, diox-CH2-CH3), 3.49–3.57 (m, 1 H, 4-Hax), 3.54 (d, J = 13.2 Hz, 0.5 H, N-CH2-Ph), 3.54 (d, J = 13.2 Hz, 0.5 H, N-CH2-Ph), 3.64 (t, J = 7.0 Hz, 1 H, Ph-CH-N), 3.68 (d, J = 13.3 Hz, 1 H, N-CH2-Ph), 3.68–3.75 (m, 1 H, 6-Hax), 3.83 (dd broad, J = 11.3/5.0, 1 H, 6-Heq), 7.27–7.37 (m, 15 H, Ar-H). A signal for the NH proton is not seen in the spectrum. HPLC (method ACN): purity 97.4%, tR = 21.11 min.
  • 1-[1-Phenyl-4-(cis-2-phenyl-1,3-dioxan-4-yl)butyl]pyrrolidine (27a).
Pharmaceuticals 18 01300 i044
The saturated ketone 22a (70 mg, 0.23 mmol) and freshly distilled pyrrolidine (29 μL, 0.345 mmol) were dissolved in CH2Cl2 abs. (5 mL). NaBH(OAc)3 (95%, 154 mg, 0.69 mmol) was added, and the mixture was heated to reflux. After 4 h, additional NaBH(OAc)3 (95%, 51 mg, 0.23 mmol) and pyrrolidine (29 μL, 0.345 mmol) were added, and the mixture was heated to reflux for additional 20 h. Then, 1 M NaOH (15 mL) was added, and the aqueous layer was extracted with CH2Cl2 (3 × 10 mL). The combined organic layers were washed with brine and dried (K2CO3). The solvent was removed in vacuo, and the residue was purified by flash column chromatography (Ø 2 cm, cyclohexane:ethyl acetate = 9:1 + 0.5% N,N-dimethylethanamine, length 18 cm, fraction 10 mL, Rf = 0.06). Colorless oil, yield 30 mg (33%). C24H31NO2, Mr = 365.5. MS (EI): m/z [%] = 365 (M, 100), 160 (Ph-CH=N(CH2-CH2)4, 100). IR (neat): ͠ν [cm−1] = 2946, 2859, 2779 (C-H), 1103 (C-O), 749, 697 (arom. monosubst.) 1H NMR (CDCl3): δ [ppm] = 1.01–1.98 (m, 12 H, 5-Hax+eq, diox-(CH2)3, N(CH2CH2)2), 2.26–2.33 (m, 2 H, N(CH2CH2)2), 2.48–2.54 (m, 2 H, N(CH2CH2)2), 3.01–3.06 (m, 1 H, Ph-CH-N), 3.64–3.73 (m, 1 H, 4-Hax), 3.86 (t broad, J = 11.3 Hz, 1 H, 6-Hax), 5.19 (dd broad, J = 11.1/4.6 Hz, 1 H, 6-Heq), 5.40 (s, 0.5 H, 2-Hax), 5.41 (s, 0.5 H, 2-Hax), 7.19–7.34 (m, 8 H, Ar-H), 7.39–7.42 (m, 2 H, Ar-H). HPLC (method ACN): purity 99.6%, tR = 18.83 min.
  • 1-[4-(trans-2-Ethyl-2-phenyl-1,3-dioxan-4-yl)-1-phenylbutyl]pyrrolidine (27b).
Pharmaceuticals 18 01300 i045
The saturated ketone 22b (70 mg, 0.21 mmol) and freshly distilled pyrrolidine (52 μL, 0.63 mmol) were dissolved in CH2Cl2 abs. (6 mL). NaBH(OAc)3 (95%, 141 mg, 0.63 mmol) was added, and the mixture was heated to reflux for a total of 4 d. Additional NaBH(OAc)3 (95%, 47 mg, 0.21 mmol) was added after 48 h. Additional pyrrolidine (each 52 μL, 0.63 mmol) was added after 24, 48 and 72 h. After 4 d, 1 M NaOH (15 mL) was added, the organic layer was separated, and the aqueous layer was extracted with CH2Cl2 (3 × 10 mL). The combined organic layers were dried (K2CO3). The solvent was removed in vacuo, and the residue was purified by flash column chromatography (Ø 2 cm, cyclohexane:ethyl acetate = 9:1 + 0.5% N,N-dimethylethanamine, length 19 cm, fraction 10 mL, Rf = 0.12). Colorless oil, yield 65 mg (83%). C26H35NO2, Mr = 393.5. MS (EM, ESI): m/z = calculated for C27H35NO2 394.2741, found 394.2740. IR (neat): ͠ν [cm−1] = 2943, 2867, 2780 (C-H), 757, 702 (arom. monosubst.). 1H NMR (CDCl3): δ [ppm] = 0.74 (t, J = 7.5 Hz, 3 H, diox-CH2-CH3), 0.99–2.05 (m, 14 H, 5-Hax+eq, diox-CH2-CH3, diox-(CH2)3, N(CH2-CH2)2), 2.37, 2.48, 2.56 (s broad each, 4 H, N(CH2-CH2)2, 3.04–3.08 (m, 1 H, Ph-CH-Npyrolidine), 3.44–3.62 (m, 1 H, 4-Hax), 3.69 (“tt”, J = 11.4/2.5 Hz, 1 H, 6-Hax), 3.79–3.85 (m, 1 H, 6-Heq), 7.20–7.39 (m, 10 H, Ar-H). HPLC (method ACN): purity 99.9%, tR = 19.98 min.

3.2. Receptor Binding Studies

3.2.1. Materials

Guinea pig brains and rat livers were commercially available (Harlan-Winkelmann, Borchen, Germany). Homogenizers: Elvehjem Potter (B. Braun Biotech International, Melsungen, Germany) and Soniprep® 150 (MSE, London, UK). Centrifuges: Cooling centrifuge model Eppendorf 5427R (Eppendorf, Hamburg, Germany) and High-speed cooling centrifuge model Sorvall® RC-5C plus (Thermo Fisher Scientific, Langenselbold, Germany). Multiplates: standard 96 well multiplates (Diagonal, Muenster, Germany). Shaker: self-made device with adjustable temperature and tumbling speed (scientific workshop of the institute). Harvester: MicroBeta® FilterMate 96 Harvester. Filter: Printed Filtermat Typ A and B. Scintillator: Meltilex® (Typ A or B) solid state scintillator. Scintillation analyzer: MicroBeta® Trilux (all Perkin Elmer LAS, Rodgau-Jügesheim, Germany).

3.2.2. Preparation of Membrane Homogenates from Guinea Pig Brain

5 guinea pig brains were homogenized with the potter (500–800 rpm, 10 up and down strokes) in 6 volumes of cold 0.32 M sucrose. The suspension was centrifuged at 1200× g for 10 min at 4 °C. The supernatant was separated and centrifuged at 23,500× g for 20 min at 4 °C. The pellet was resuspended in 5–6 volumes of buffer (50 mM TRIS, pH 7.4) and centrifuged again at 23,500× g (20 min, 4 °C). This procedure was repeated twice. The final pellet was resuspended in 5–6 volumes of buffer and frozen (−80 °C) in 1.5 mL portions containing about 1.5 mg protein/mL.

3.2.3. Preparation of Membrane Homogenates from Rat Liver

Two rat livers were cut into small pieces and homogenized with the potter (500–800 rpm, 10 up and down strokes) in 6 volumes of cold 0.32 M sucrose. The suspension was centrifuged at 1200× g for 10 min at 4 °C. The supernatant was separated and centrifuged at 31,000× g for 20 min at 4 °C. The pellet was resuspended in 5–6 volumes of buffer (50 mM TRIS, pH 8.0) and incubated at rt for 30 min. After the incubation, the suspension was centrifuged again at 31,000× g for 20 min at 4 °C. The final pellet was resuspended in 5–6 volumes of buffer and stored at −80 °C in 1.5 mL portions containing about 2 mg protein/mL.

3.2.4. Cell Culture and Preparation of Membrane Homogenates from GluN2B Cells

Mouse L(tk-) cells stably transfected with the dexamethasone-inducible eukaryotic expression vectors pMSG GluN1a, pMSG GluN2B (1:5 ratio) were grown in Modified Earl’s Medium (MEM) containing 10% of standardized FBS Superior (Biochrom AG, Berlin, Germany). The expression of the NMDA receptor at the cell surface was induced after the cell density of the adherent growing cells had reached approximately 90% of confluency. For the induction, the original growth medium was replaced by growth medium containing 4 µM dexamethasone and 4 µM ketamine (final concentration). After 24 h, the cells were rinsed with phosphate-buffered saline solution (PBS, Biochrom AG, Berlin, Germany), harvested by mechanical detachment and pelleted (10 min, 1200× g).
For the binding assay, the cell pellet was resuspended in PBS solution, and the number of cells was determined using a Scepter® cell counter (MERCK Millipore, Darmstadt, Germany). Subsequently, the cells were lysed by sonication (4 °C, 6 × 10 s cycles with breaks of 10 s). The resulting cell fragments were centrifuged with a high performance cool centrifuge (23,500× g, 4 °C). The supernatant was discarded, and the pellet was resuspended in a defined volume of PBS yielding cell fragments of approximately 500,000 cells/mL. The suspension of membrane homogenates was sonicated again (4 °C, 2 × 10 s cycles with a break of 10 s) and stored at −80 °C.

3.2.5. Protein Determination

The protein concentration was determined by the method of Bradford, modified by Stoscheck. Om brief, the Bradford solution was prepared by dissolving 5 mg of Coomassie Brilliant Blue G 250 in 2.5 mL of EtOH (95%, v/v). 10 mL deionized H2O and 5 mL phosphoric acid (85%, m/v) were added to this solution, the mixture was stirred and filled to a total volume of 50 mL with deionized water. The calibration was carried out using bovine serum albumin as a standard in 9 concentrations (0.1, 0.2, 0.4, 0.6, 0.8, 1.0, 1.5, 2.0 and 4.0 mg/mL). In a 96 well standard multiplate, 10 µL of the calibration solution or 10 µL of the membrane receptor preparation were mixed with 190 µL of the Bradford solution, respectively. After 5 min, the UV absorption of the protein-dye complex at λ = 595 nm was measured with a plate reader (Tecan Genios®, Tecan, Crailsheim, Germany).

3.2.6. General Procedures for the Binding Assays

The test compound solutions were prepared by dissolving approximately 10 µmol (usually 2–4 mg) of test compound in DMSO so that a 10 mM stock solution was obtained. To obtain the required test solutions for the assay, the DMSO stock solution was diluted with the respective assay buffer. The filtermats were presoaked in 0.5% aqueous polyethylenimine solution for 2 h at rt before use. All binding experiments were carried out in duplicates in the 96 well multiplates. The concentrations given are the final concentration in the assay. Generally, the assays were performed by addition of 50 µL of the respective assay buffer, 50 µL of test compound solution in various concentrations (10−5, 10−6, 10−7, 10−8, 10−9 and 10−10 mol/L), 50 µL of the corresponding radioligand solution and 50 µL of the respective receptor preparation into each well of the multiplate (total volume 200 µL). The receptor preparation was always added last. During the incubation, the multiplates were shaken at a speed of 500–600 rpm at the specified temperature. Unless otherwise noted, the assays were terminated after 120 min by rapid filtration using the harvester. During the filtration, each well was washed five times with 300 µL of water. Subsequently, the filtermats were dried at 95 °C. The solid scintillator was melted on the dried filtermats at a temperature of 95 °C for 5 min. After solidifying the scintillator at rt, the trapped radioactivity in the filtermats was measured with the scintillation analyzer. Each position on the filtermat, corresponding to one well of the multiplate, was measured for 5 min with the [3H]-counting protocol. The overall counting efficiency was 20%. The IC50 values were calculated with the program GraphPad Prism® 3.0 (GraphPad Software, San Diego, CA, USA) by non-linear regression analysis. Subsequently, the IC50 values were transformed into Ki values using the equation of Cheng and Prusoff. The Ki values are given as mean value ± SEM from three independent experiments.

3.2.7. Performance of the σ1 Receptor Assay [24]

The assays were performed with the radioligand [3H]-(+)-pentazocine (22.0 Ci/mmol; Perkin Elmer). The thawed membrane preparation of guinea pig brain (about 100 μg of the protein) was incubated with various concentrations of test compounds, 2 nM [3H]-(+)-pentazocine, and TRIS buffer (50 mM, pH 7.4) at 37 °C. The non-specific binding was determined with 10 μM unlabeled (+)-pentazocine. The Kd value of (+)-pentazocine is 2.9 nM.

3.2.8. Performance of the σ2 Receptor Assay [24]

The assays were performed with the radioligand [3H]di-o-tolylguanidine (specific activity 50 Ci/mmol; ARC, St. Louis, MO, USA). The thawed rat liver membrane preparation (about 100 µg protein) was incubated with various concentrations of the test compound, 3 nM [3H]di-o-tolylguanidine and buffer containing (+)-pentazocine (500 nM (+)-pentazocine in TRIS buffer (50 mM TRIS, pH 8.0)) at rt. The non-specific binding was determined with 10 μM non-labeled di-o-tolylguanidine. The Kd value of di-o-tolylguanidine is 17.9 nM.

3.2.9. Performance of the GluN2B Assay [26]

The competitive binding assay was performed with the radioligand [3H]ifenprodil (60 Ci/mmol; BIOTREND, Cologne, Germany). The thawed cell membrane preparation from the transfected L(tk-) cells (about 20 μg protein) was incubated with various concentrations of test compounds, 5 nM [3H]ifenprodil, and TRIS/EDTA-buffer (5 mM TRIS/1 mM EDTA, pH 7.5) at 37 °C. The non-specific binding was determined with 10 μM unlabeled ifenprodil. The Kd value of ifenprodil is 7.6 nM.

3.2.10. Further Assays to Record Receptor Affinity

The assays to determine the affinity towards the PCP binding site of NMDA receptors [22,25], towards µ-opioid receptors [28], towards κ-opioid receptors [28] and towards δ-opioid receptors [28] were conducted as reported in literature.

3.3. Determination of logD7.4 Values [29]

Instruments and parameters for LC-MS standard analysis (in general, if not stated otherwise).
UPLC-UV/MS (Agilent, Waldbronn, Germany): degasser: 1260 HiP (G4225A); pump: 1260 Bin Pump (G1212B); autosampler: 1260 HiP ALS (G1367E); column oven: 1290 TCC (G1316C), 30 °C; UV/Vis detector: 1260 VWD (G1314F); MS-detector: 6120 Quadrupole LC/MS (G1978B). MS source: multimode source (G1978B); ESI mode; SIM mode (m/z given for each compound). Data acquisition and settings were performed with OpenLab CDS (ChemStation Edition, Agilent, Waldbronn, Germany). Guard column: Zorbax Eclipse Plus-C18 (Agilent, Waldbronn, Germany) (2.1 mm × 12.5 mm, 5.0 μm particle size). Main column: Zorbax SB-C18 (Agilent, Waldbronn, Germany) (2.1 mm × 50 mm, 1.8 μm particle size). Spray chamber: vaporizer temperature: 200 °C; drying gas: 12 L/min; nebulizer pressure: 40 psi; capillary voltage: 3000 V; corona current: 4 µA; charging voltage: 2000 V; fragmentor voltage: 100 V; drying gas temperature: 250 °C. 2 mL safe lock tubes (Eppendorf, Hamburg, Germany), 2 mL LC-MS vials (Agilent, Waldbronn, Germany).
LC-MS standard method (LC parameters in general, if not stated otherwise).
Eluents: solvent A: H2O/CH3CN 95:5 + 0.1% formic acid; solvent B: H2O/CH3CN 5:95 + 0.1% formic acid; gradient elution (A %): 0–2.5 min: gradient from 100% to 0%, 2.5–3.5 min: 0%, 3.5–4.0 min: gradient from 0% to 100%, 4.0–8.0 min: 100%. Change valve position: after 1.0 min the valve was switched from “waste” to “MS source”. Flow rate: 0.4 mL/min. Injection volume: 1.0 µL to 100 µL (given for each compound, 1.0 µL if not stated otherwise).
Chemicals, solvents and stock solutions.
3-Morpholinopropanesulfonic acid (MOPS) (Fisher Chemical, Schwerte, Germany 372.5 mg, 8.9 mM) and MOPS sodium salt (Merck KgaA, Darmstadt, Germany, 513.4 mg, 11.1 mM) were dissolved in dist. H2O (200 mL) to prepare a 20 mM buffer solution with pH 7.4. A mixture of n-octanol (Merck KgaA, Darmstadt, Germany) and MOPS buffer (20 mM, pH 7.4) in the ratio 1:1 was stirred overnight at room temperature (500 rpm) to saturate both liquids with each other. Afterwards, the aqueous and organic layers were separated.
10 mM stock solutions of the test compounds in DMSO (MERCK-Schuchardt, Hohenbrunn, Germany) were prepared by dissolving an exactly weighted amount of the test compound and adding the calculated amount of DMSO. Depending on the lipophilicity, either the 10 mM stock solution was used directly, or the stock solution was diluted 1:100 with MOPS buffer to a concentration of 100 µM.
General procedure.
In order to determine the logD7.4 value, the micro shake flask method was used [1,2]. To create physiological conditions a buffer with pH 7.4 was used to analyze the lipophilicity (logD7.4). The logD7.4 value was determined by using three different volume ratios of buffer and n-octanol (1:1, 2:1, 1:2).
Method LA (standard procedure): The 10 mM DMSO stock solution of the test compound (7.5 µL) was added to three different volumes of MOPS buffer (750 µL, 1000 µL, 500 µL) in 2 mL Eppendorf tubes. Afterwards, the tubes were filled up to 1500 µL with n-octanol (750 µL, 500 µL, 1000 µL). Each ratio was produced as a triplicate. The tubes were vortexed at rt and centrifuged at 4 °C with 16,000 rpm for 2 min.
Method LB (for very hydrophilic compounds): The 100 µM MOPS solution of the test compound (75 µL) was added to three different volumes of MOPS buffer (675 µL, 925 µL, 425 µL) in 2 mL Eppendorf tubes. n-Octanol was added to fill up the tubes to a total volume of 1500 µL (750 µL, 500 µL, 1000 µL). Each ratio was produced as a triplicate. Afterwards, the tubes were vortexed at rt and centrifuged at 4 °C with 16,000 rpm for 2 min.
An aliquot of the aqueous layer was analyzed by LC-MS standard method. For matrix-matched calibration to calculate logD7.4 value, the samples were diluted with MOPS buffer within a range of 1.56 nM to 1.0 µM or 39 nM to 10 µM. All samples were measured once.

3.4. Metabolic Stability In Vitro [29]

Preparation of mouse liver microsomes
Frozen livers (−80 °C) from male C57BL/6 mice were received from Prof. Dr. Martina Düfer from the Institute of Pharmaceutical and Medicinal Chemistry (University of Münster).
At first, the frozen livers were warmed up at 37 °C for a few min and washed with 1.15% (m/v) KCl solution at 4 °C. After cutting the livers into small pieces, the livers were homogenized in an Elvehjem-Potter (10 strokes, 3 s, 800 rpm) with cold phosphate buffer (pH 7.4, 0.1 M, 1.0 mL PBS/g liver) containing sodium EDTA (0.5 mM). PBS (pH 7.4, 0.1 M, 3.0 mL PBS/g liver), cooled on ice, was added, and the resulting suspension was centrifuged at 9000× g for 20 min at 4 °C. The supernatant was centrifuged again at 40,000× g for 90 min at 4 °C. The obtaining microsome pellet was dissolved in PBS (pH 7.4, 0.1 M). Aliquots of 1.0 mL were filled in safe lock Eppendorf tubes and stored at −80 °C.
Instruments and parameters for LC-MS standard analysis (in general, if not stated otherwise).
UPLC-UV/MS (Agilent, Waldbronn, Germany): degasser: 1260 HiP (G4225A); pump: 1260 Bin Pump (G1212B); autosampler: 1260 HiP ALS (G1367E); column oven: 1290 TCC (G1316C), 30 °C; UV/Vis detector: 1260 VWD (G1314F); MS-detector: 6120 Quadrupole LC/MS (G1978B). MS source: multimode source (G1978B); ESI mode; SIM mode (m/z given for each compound). Data acquisition and settings were performed with OpenLab CDS (ChemStation Edition, Agilent, Waldbronn, Germany). Guard column: Zorbax Eclipse Plus-C18 (Agilent, Waldbronn, Germany) (2.1 mm × 12.5 mm, 5.0 μm particle size). Main column: Zorbax SB-C18 (Agilent, Waldbronn, Germany) (2.1 mm × 50 mm, 1.8 μm particle size). Spray chamber: vaporizer temperature: 200 °C; drying gas: 12 L/min; nebulizer pressure: 40 psi; capillary voltage: 3000 V; corona current: 4 µA; charging voltage: 2000 V; fragmentor voltage: 100 V; drying gas temperature: 250 °C. 2 mL safe lock tubes (Eppendorf, Hamburg, Germany), 2 mL LC-MS vials (Agilent, Waldbronn, Germany).
LC-MS standard method (LC parameters in general, if not stated otherwise).
Eluents: solvent A: H2O/CH3CN 95:5 + 0.1 % formic acid; solvent B: H2O/CH3CN 5:95 + 0.1 % formic acid; gradient elution (A %): 0–2.5 min: gradient from 100% to 0%, 2.5–3.5 min: 0%, 3.5–4.0 min: gradient from 0% to 100%, 4.0–8.0 min: 100%. Change valve position: after 1.0 min the valve was switched from “waste” to “MS source”. Flow rate: 0.4 mL/min. Injection volume: 1.0 µL to 100 µL (given for each compound, 1.0 µL if not stated otherwise).
Chemicals, solvents and stock solutions.
NADPH Na4 (Carl Roth, Karlsruhe, Germany) and UDPGA Na3 (Merck KgaA, Darmstadt, Germany) were dissolved in phosphate buffer (PBS, 0.1 M, pH 7.4, Merck KGaA, Darmstadt, Germany) to prepare a 2.0 mg/mL solution, respectively. MgCl2 (Honeywell Specialty Chemicals, Seelze, Germany) was dissolved in bidist. H2O to a 0.05 M solution. 1.0 mM solutions of the test compounds were prepared from the 10 mM DMSO stock solutions by diluting 1:10 with DMSO (MERCK-Schuchardt, Hohenbrunn, Germany).
Phase I Metabolism.
NADPH-Na4 (2.0 mg/mL in 0.1 M PBS, 50 µL), MgCl2 (0.05 M in H2O, 50 µL) and phosphate buffer (PBS, 0.1 M, 76.8 µL) were mixed in an Eppendorf tube. The test compound (1.0 mM in DMSO, 1.2 µL) and mouse liver microsomes (MLM, 22 µL) were added. Instead of test compound, imipramine (1.0 mM in DMSO, 1.2 µL) was incubated with mouse liver microsomes as positive control. The metabolic stability of imipramine using this procedure is well known (20% of parent compound after 90 min incubation). The prepared samples were incubated at 37 °C for 90 min at 900 rpm at the thermomixer (Eppendorf). The incubation was stopped by adding CH3CN/CH3OH 1:1 (400 µL) to the samples and ice-cooling for 10 min to precipitate the proteins. The samples were centrifuged at 4 °C for 15 min at 16,000 rpm. An aliquot of the supernatant was measured by LC-MS standard method. An “empty sample” (without test compound, PBS was added to replace the missing volume) was prepared in the same way. Additionally, “blanks” (without NADPH Na4, PBS was added to replace the missing volume) were prepared according to the same procedure. The test compound (10 mM in DMSO, 1.2 µL) was added after precipitating the proteins under ice-cooling for 10 min.

4. Conclusions

Homologation of the primary ethanamine 2a (Ki(PCP) = 19 nM) to primary butanamine 14b (Ki(PCP) = 731 nM) led to considerably reduced affinity towards the PCP binding site of the NMDA receptor. An additional phenyl moiety in α-position of the primary amine slightly increased the PCP affinity of 24b (Ki(PCP) = 524 nM). It was concluded that the PCP binding site did not tolerate homologation of ethanamine 2a by two CH2 moieties.
However, homologation of the benzylated ethanamine 1 (Ki1) = 19 nM) by two CH2 moieties led to the benzylated butanamine 17a Ki1) = 31 nM) exhibiting almost the same σ1 affinity as 1. Methylation of the secondary amine 17a resulted in the very potent σ1 ligand 18a (Ki1) = 6.3 nM). 1,3-Dioxanes 17b Ki1) = 14 nM) and 18b Ki1) = 8.7 nM) derived from propiophenone showed almost the same σ1 affinity as the analogous benzaldehyde derivatives 17a and 18a. Obviously, the σ1 receptor well tolerates homologation of the aminoethyl side chain and the change in relative configuration of 1,3-dioxane-based ligands.
The benzaldehyde-derived 1,3-dioxanes 17a and 18a show higher selectivity for σ1 receptors over σ2 receptors and the ifenprodil binding site of the NMDA receptor than the analogous propiophenone derivatives 17b and 18b. The 1,3-dioxanes 17a,b and 18a,b neither bound at the PCP binding site of the NMDA receptor nor at opioid receptors. These data indicate very high selectivity for the σ1 receptor.
The benzyl group at the amino moiety of 17a,b and 18a,b corresponds to the second hydrophobic region postulated in σ1 pharmacophore models. Compounds 2427 did not reach the σ1 affinity of the benzylamines 17a,b and 18a,b, although they contain an additional phenyl moiety at the butyl side chain as second hydrophobic region. However, small aliphatic substituents at the amino moiety of these ligands (e.g., propiophenone derivatives 25b, 27b) already led to moderate σ1 affinity.
The highest LLE values were determined for the benzylamine 17a (LLE = 6.19) and the pyrrolidine 19a (LLE = 6.72). Due to their excellent selectivity over σ2 receptors, the PCP and ifenprodil binding sites at NMDA receptors, and µ-, κ-, and δ-opioid receptors (only shown for 17a), 17a and 19a represent the most promising σ1 ligands of this series of compounds, although they exhibit only moderate σ1 affinity (Ki(17a) = 31 nM, Ki(19a) = 154 nM). Both ligands showed a medium metabolic stability, i.e., after incubation with mouse liver microsomes and NADPH for 90 min, 56% and 55% of intact parent compound 17a and 19a were detected, respectively.

Supplementary Materials

The following supporting information can be downloaded at: https://www.mdpi.com/article/10.3390/ph18091300/s1. The Supporting Information contains the opioid receptor affinity data of butanamines 17 and 18, general chemistry methods, HPLC methods to determine the purity of compounds, synthesis of pentane-1,3,5-triol, comparison of the structures of etoxadrol, ethanamine 2a and butanamine 14b, as well as NMR spectra, mass spectra and HPLC traces of all test compounds to prove their purity.

Author Contributions

Conceptualization, B.W.; Methodology, E.Q. and D.S.; Validation, D.S.; Formal analysis, E.Q. and B.W.; Investigation, E.Q., D.S. and B.W.; Resources, B.W.; Writing—original draft, B.W.; Supervision, B.W.; Project administration, B.W.; Funding acquisition, B.W. All authors have read and agreed to the published version of the manuscript.

Funding

This work was supported by the Deutsche Forschungsgemeinschaft (DFG), which is gratefully acknowledged.

Data Availability Statement

Data is contained within the article or supplementary material

Conflicts of Interest

The authors declare no conflicts of interest.

Abbreviations

DIAD, diisopropyl azodicarboxylate; DMSO, dimethyl sulfoxide; LDA, lithium diisopropylamide; LLE, ligand-lipophilicity efficiency; NADPH, nicotinamide adenine dinucleotide phosphate; NMDA, N-methyl-d-aspartate; PCP, 1-(1-phenylcyclohexyl)piperidine (phencyclidine); PET, positron emission tomography; SEM, standard error of the mean; THF, tetrahydrofuran.

References

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Figure 1. Design of potential σ1 ligands 5 with 1,3-dioxane scaffold and homologous butan-1-amine side chain.
Figure 1. Design of potential σ1 ligands 5 with 1,3-dioxane scaffold and homologous butan-1-amine side chain.
Pharmaceuticals 18 01300 g001
Scheme 1. Synthesis of 4-substituted butan-1-amines 14 and 1619. Reagents and reaction conditions: (a) pTsOH, CH2Cl2 or toluene, reflux, 16 h or 1.5 h, 78% (8a), 90% (8b). (b) Oxalyl chloride, DMSO, CH2Cl2, −78 °C, 45 min, then NEt3, 91% (9a), 89% (9b). (c) Ph3P=CHCO2Et, THF, rt, 24 h, reflux, 2 h, 95% ((E)-10a: (Z)-10a = 10:1). (d) Ph3P=CHCO2CH3, THF, rt, 21 h, 95% ((E)-10b:(Z)-10b = 15:1). (e) NH4 HCO2, Pd/C, CH3OH, reflux, 2–3 h 92% (11a), 92% (11b). (f) LiBH4, THF, rt, 17 h, reflux, 2–3 h, 97% (12a), 96% (12b). (g) Zn(N3)2·2 pyridine, PPh3, DIAD (diisopropyl azodicarboxylate), toluene, rt, 5 h, 67% (13a), 58% (13b). (h) H2 (balloon), Pd/C, EtOAc, rt, 5 h, 84% (14a), 63% (14b). (i) CH3SO2Cl, CH2Cl2, NEt3, rt, 4 h, 96% (15a), 97% (15b). (j) CH3NH2, EtOH, reflux, 3–5 h, 70% (16a), 74% (16b). (k) HNR2, CH3CN, K2CO3, reflux, 14–25 h, 80–94%; (exception 32% for 17a). (l) CH2=O, H2O, CH3OH, CH2Cl2, NaBH(OAc)3, rt, 16 h, 91% (18b).
Scheme 1. Synthesis of 4-substituted butan-1-amines 14 and 1619. Reagents and reaction conditions: (a) pTsOH, CH2Cl2 or toluene, reflux, 16 h or 1.5 h, 78% (8a), 90% (8b). (b) Oxalyl chloride, DMSO, CH2Cl2, −78 °C, 45 min, then NEt3, 91% (9a), 89% (9b). (c) Ph3P=CHCO2Et, THF, rt, 24 h, reflux, 2 h, 95% ((E)-10a: (Z)-10a = 10:1). (d) Ph3P=CHCO2CH3, THF, rt, 21 h, 95% ((E)-10b:(Z)-10b = 15:1). (e) NH4 HCO2, Pd/C, CH3OH, reflux, 2–3 h 92% (11a), 92% (11b). (f) LiBH4, THF, rt, 17 h, reflux, 2–3 h, 97% (12a), 96% (12b). (g) Zn(N3)2·2 pyridine, PPh3, DIAD (diisopropyl azodicarboxylate), toluene, rt, 5 h, 67% (13a), 58% (13b). (h) H2 (balloon), Pd/C, EtOAc, rt, 5 h, 84% (14a), 63% (14b). (i) CH3SO2Cl, CH2Cl2, NEt3, rt, 4 h, 96% (15a), 97% (15b). (j) CH3NH2, EtOH, reflux, 3–5 h, 70% (16a), 74% (16b). (k) HNR2, CH3CN, K2CO3, reflux, 14–25 h, 80–94%; (exception 32% for 17a). (l) CH2=O, H2O, CH3OH, CH2Cl2, NaBH(OAc)3, rt, 16 h, 91% (18b).
Pharmaceuticals 18 01300 sch001
Scheme 2. Synthesis of 4-substituted 1-phenylbutan-1-amines 2427. Reagents and reaction conditions: (a) Acetophenone, LDA, THF, −78 °C, 45–80 min, 69% (20a), 84% (20b). (b) CH3SO2Cl, NEt3, CH2Cl2, 0 °C, 2–2.5 h, 84% ((E)-21a), 93% ((E)- + (Z)-21b). (c) NH4 HCO2, Pd/C, CH3OH, reflux, 2 h, 82% (22a), 75% (22b). (d) NH2OH·HCl, NaOAc, EtOH, reflux, 7 h, 78% (23a). (e) LiAlH4, THF, rt, 19 h, then reflux, 4 h, 53%. (f) NH4OAc, CH3OH, NaBH3CN, reflux, 22–24 h, 56% (24a), 45% (24b). (g) HNR2, NaBH(OAc)3, CH2Cl2, reflux, 1–4 d, 33–83%.
Scheme 2. Synthesis of 4-substituted 1-phenylbutan-1-amines 2427. Reagents and reaction conditions: (a) Acetophenone, LDA, THF, −78 °C, 45–80 min, 69% (20a), 84% (20b). (b) CH3SO2Cl, NEt3, CH2Cl2, 0 °C, 2–2.5 h, 84% ((E)-21a), 93% ((E)- + (Z)-21b). (c) NH4 HCO2, Pd/C, CH3OH, reflux, 2 h, 82% (22a), 75% (22b). (d) NH2OH·HCl, NaOAc, EtOH, reflux, 7 h, 78% (23a). (e) LiAlH4, THF, rt, 19 h, then reflux, 4 h, 53%. (f) NH4OAc, CH3OH, NaBH3CN, reflux, 22–24 h, 56% (24a), 45% (24b). (g) HNR2, NaBH(OAc)3, CH2Cl2, reflux, 1–4 d, 33–83%.
Pharmaceuticals 18 01300 sch002
Table 1. Affinities of butan-1-amines 14, 1619 and 2427 towards σ1, and σ2 receptors as well as towards the PCP and ifenprodil binding sites of the NMDA receptor. Affinity data of reference compounds for each receptor subtype are included.
Table 1. Affinities of butan-1-amines 14, 1619 and 2427 towards σ1, and σ2 receptors as well as towards the PCP and ifenprodil binding sites of the NMDA receptor. Affinity data of reference compounds for each receptor subtype are included.
Pharmaceuticals 18 01300 i001
Compd.R1R2NR2Ki ± SEM [nM] (n = 3) (a)
σ1σ2PCPGluN2B
14aPhHNH2>1,000>1000>1000>1000
14bEtPh>1,000>1000731>1000
16aPhHNHCH3842>1000>1000>1000
16bEtPh107 ± 5311>1000>1000
17aPhHNHBn31 ± 4.0213>1000>1000
17bEtPh14 ± 6.122 ± 1.9569 ± 14139 ± 13
18aPhHN(CH3)Bn6.3 ± 2.431 ± 3.1>1000261 ± 54
18bEtPh8.7 ± 3.624 ± 6.3>100020 ± 3.3
19aPhHPharmaceuticals 18 01300 i002154 ± 8>1000>1000>1000
19bEtPh56 ± 1957 ± 1.9>100067 ± 18
24aPhHNH2>10001000>10001350
24bEtPh427170524136 ± 36
25aPhHNHCH3144 ± 26>1000>1000716
25bEtPh58 ± 8.2255>1000190 ± 39
26aPhHNHBn918907>1000>1000
26bEtPh88 ± 43139>1000257 ± 57
27aPhHPharmaceuticals 18 01300 i003161 ± 59>1000>1000366
27bEtPh19 ± 0.664 ± 15>100063 ± 20
(+)-pentazocine5.7 ± 2.2-
Haloperidol6.3 ± 1.678 ± 2.3
di-o-tolylguanidine89 ± 2958 ± 18
Memantine--740 ± 47
Dexoxadrol--25 ± 4
Ifenprodil---10 ± 0.7
Traxoprodil---128 ± 42
(a) The given Ki values represent means of three independent experiments (n = 3). Values in % represent the inhibition of the radioligand binding at a test compound concentration of 1 µM. Values without SEM represent the mean of two experiments.
Table 2. Lipophilicity and metabolic stability of promising σ1 receptor ligands.
Table 2. Lipophilicity and metabolic stability of promising σ1 receptor ligands.
Pharmaceuticals 18 01300 i004
Compd.R1R2NR2pKi1)logD7.4LLE (a)Metabolic Stability (5) (b)
17aPhHNHBn7.511.32 ± 0.046.1956 ± 3
17bEtPh7.852.65 ± 0.045.2050 ± 4
18aPhHN(CH3)Bn8.202.49 ± 0.055.7148 ± 4
18bEtPh8.063.54 ± 0.064.5236 ± 1
19aPhHPharmaceuticals 18 01300 i0056.810.09 ± 0.056.7255 ± 2
19bEtPh7.251.29 ± 0.055.9662 ± 2
27aPhHPharmaceuticals 18 01300 i0066.792.20 ± 0.074.5976 ± 3
27bEtPh7.723.33 ± 0.084.3955 ± 5
imipramine 29 ± 3
(a) LLE (ligand-lipophilicity efficiency) = pKi1) − logD7.4. (b) Amount of the remaining unmetabolized parent compound (in %) after 90 min incubation with mouse liver microsomes and NADPH.
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Quick, E.; Schepmann, D.; Wünsch, B. Synthesis and Structure-Affinity Relationships of Receptor Ligands with 1,3-Dioxane Structure. Pharmaceuticals 2025, 18, 1300. https://doi.org/10.3390/ph18091300

AMA Style

Quick E, Schepmann D, Wünsch B. Synthesis and Structure-Affinity Relationships of Receptor Ligands with 1,3-Dioxane Structure. Pharmaceuticals. 2025; 18(9):1300. https://doi.org/10.3390/ph18091300

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Quick, Elisabeth, Dirk Schepmann, and Bernhard Wünsch. 2025. "Synthesis and Structure-Affinity Relationships of Receptor Ligands with 1,3-Dioxane Structure" Pharmaceuticals 18, no. 9: 1300. https://doi.org/10.3390/ph18091300

APA Style

Quick, E., Schepmann, D., & Wünsch, B. (2025). Synthesis and Structure-Affinity Relationships of Receptor Ligands with 1,3-Dioxane Structure. Pharmaceuticals, 18(9), 1300. https://doi.org/10.3390/ph18091300

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