Next Article in Journal
Unveiling the Role of PAR 1: A Crucial Link with Inflammation in Diabetic Subjects with COVID-19
Previous Article in Journal
3-Methoxy-Phencyclidine Induced Psychotic Disorder: A Literature Review and an 18F-FDG PET/CT Case Report
 
 
Font Type:
Arial Georgia Verdana
Font Size:
Aa Aa Aa
Line Spacing:
Column Width:
Background:
Correction

Correction: Liu et al. The Discovery of Novel Agents against Staphylococcus aureus by Targeting Sortase A: A Combination of Virtual Screening and Experimental Validation. Pharmaceuticals 2024, 17, 58

1
College of Bioscience and Biotechnology, Yangzhou University, Yangzhou 225009, China
2
College of Chemistry and Chemical Engineering, Yangzhou University, Yangzhou 225009, China
3
Department of the Heart and Great Vessels, Affiliated Hospital of Yangzhou University, Yangzhou 225009, China
*
Authors to whom correspondence should be addressed.
These authors contributed equally to this work.
Pharmaceuticals 2024, 17(4), 453; https://doi.org/10.3390/ph17040453
Submission received: 14 March 2024 / Revised: 15 March 2024 / Accepted: 22 March 2024 / Published: 1 April 2024
(This article belongs to the Section Biopharmaceuticals)

Error in Table and Figure Description

In the original publication [1], there were mistakes in Table 1 as published. Firstly, the molecular structures of screened compound ID 2 (Naldemedine) and compound ID 4 (Norgestrel) were described incorrectly. Secondly, compound ID 8 (Doxycycline) was inconsistent with the structure in Figure S8. The correct name of compound 8 is Simeprevir. The corrected Table 1, along with corresponding corrections in the Table S1 and Figure S8 descriptions, are provided below. The authors state that the scientific conclusions are unaffected. This correction was approved by the Academic Editor. The original publication has also been updated.

Reference

  1. Liu, K.; Tong, J.; Liu, X.; Liang, D.; Ren, F.; Jiang, N.; Hao, Z.; Li, S.; Wang, Q. The Discovery of Novel Agents against Staphylococcus aureus by Targeting Sortase A: A Combination of Virtual Screening and Experimental Validation. Pharmaceuticals 2024, 17, 58. [Google Scholar] [CrossRef] [PubMed]
Figure S8. Analysis of the binding pose of Simeprevir with SrtA. (a) The structure of the complex. Three-dimensional (b) and two-dimensional (c) interaction diagrams of the binding pose of Simeprevir with SrtA.
Figure S8. Analysis of the binding pose of Simeprevir with SrtA. (a) The structure of the complex. Three-dimensional (b) and two-dimensional (c) interaction diagrams of the binding pose of Simeprevir with SrtA.
Pharmaceuticals 17 00453 g001
Table 1. The molecular docking results indicate that the top 12 drugs have binding energies below −9.0 kcal/mol. The positive and negative controls are depicted in the final two lines. The occupied sites correspond to the binding sites of LPXTG, as shown in Figure 1c.
Table 1. The molecular docking results indicate that the top 12 drugs have binding energies below −9.0 kcal/mol. The positive and negative controls are depicted in the final two lines. The occupied sites correspond to the binding sites of LPXTG, as shown in Figure 1c.
IDCompoundStructureBinding Energy (kcal/mol)corrScoreRatio of Occupied Sites
1Trypan BluePharmaceuticals 17 00453 i001−9.600
2NaldemedinePharmaceuticals 17 00453 i002−9.60.8471.4%
3LomitapidePharmaceuticals 17 00453 i003−9.40.6964.3%
4NorgestrelPharmaceuticals 17 00453 i004−9.20.860
5TriazolamPharmaceuticals 17 00453 i005−9.10.8250.0%
6FlouresceinPharmaceuticals 17 00453 i006−9.10.8257.1%
7MidazolamPharmaceuticals 17 00453 i007−9.00.8064.3%
8SimeprevirPharmaceuticals 17 00453 i008−9.00.5550.0%
9AlprazolamPharmaceuticals 17 00453 i009−9.00.8050.0%
10TelmisartanPharmaceuticals 17 00453 i010−9.00.7271.4%
11NilotinibPharmaceuticals 17 00453 i011−9.00.7164.3%
12AzilsartanPharmaceuticals 17 00453 i012−9.00.6985.7%
Positive controlRosmarinic acidPharmaceuticals 17 00453 i013−7.60.3964.3%
Negative control2,3-Bis(4-methoxyphenyl)propanenitrilePharmaceuticals 17 00453 i014−6.20.1835.7%
Table S1. Binding sites of 12 screened drugs and two controls. Residues marked in red are the functional sites of SrtA, as indicated in Figure 1c.
Table S1. Binding sites of 12 screened drugs and two controls. Residues marked in red are the functional sites of SrtA, as indicated in Figure 1c.
IDCompoundBinding Sites
1Trypan BlueThr121, Phe122, Ile123, Thr131, Lys134, Asp185, Asp186, Tyr187, Gly192, Val193, Trp194, Lys198
2NaldemedinePro91, Ala92, Leu97, Ala104, Glu105, Glu106, Ala118, Gly119, His120, Val166, Val168, Leu169, Ile182, Cys184, Trp194, Arg197
3LomitapidePro91, Ala92, Thr93, Leu97, Ala104, Glu105, Glu106, His120, Lys162, Asp165, Val166, Val168, Leu169, Ile182, Arg197
4NorgestrelThr121, Ile123, Asp185, Asp186, Phe122, Trp194, Tyr187
5TriazolamAla92, Ala104, His120, Val168, Leu169, Ile182, Cys184, Arg197
6FlouresceinAla104, Ala118, Val161, Lys162, Thr164, Asp165, Val168, Leu169, Ile182, Arg197
7MidazolamAla92, Ala104, His120, Thr164, Asp165, Val168, Leu169, Ile182, Cys184, Arg197
8SimeprevirPro91, Ala92, Thr93, Glu95, Ala104, Glu105, Ala118, Asp165, Val166, Leu169, Ile182, Arg197
9AlprazolamAla92, Ala104, His120, Val168, Leu169, Ile182, Cys184, Arg197
10TelmisartanPro91, Ala92, Thr93, Leu97, Ala104, Glu105, Glu106, Ala118, His120, Lys162, Thr164, Asp165, Val166, Val168, Leu169, Arg197, Ile199
11NilotinibPro91, Thr93, Ala104, Glu105, Glu106, Asn107, Ala118, Gly119, Lys162, Thr164, Asp165, Val168, Ile182, Arg197, Ile199
12AzilsartanPro91, Ala92, Thr93, Leu97, Ala104, His120, Lys162, Pro163, Thr164, Asp165, Val166, Val168, Val169, Ile182, Cys184, Arg197, Ile199
Positive
control
Rosmarinic acidLeu97, Ala104, Ala118, Gly119, His120, Thr121, Val166, Val168, Leu169, Ile182, Ile183, Cys184, Trp194, Arg197
Negative
control
2,3-Bis(4-methoxyphenyl)propanenitrileAla92, Leu97, Ala104, Pro163, Val166, Val168, Ieu169
Disclaimer/Publisher’s Note: The statements, opinions and data contained in all publications are solely those of the individual author(s) and contributor(s) and not of MDPI and/or the editor(s). MDPI and/or the editor(s) disclaim responsibility for any injury to people or property resulting from any ideas, methods, instructions or products referred to in the content.

Share and Cite

MDPI and ACS Style

Liu, K.; Tong, J.; Liu, X.; Liang, D.; Ren, F.; Jiang, N.; Hao, Z.; Li, S.; Wang, Q. Correction: Liu et al. The Discovery of Novel Agents against Staphylococcus aureus by Targeting Sortase A: A Combination of Virtual Screening and Experimental Validation. Pharmaceuticals 2024, 17, 58. Pharmaceuticals 2024, 17, 453. https://doi.org/10.3390/ph17040453

AMA Style

Liu K, Tong J, Liu X, Liang D, Ren F, Jiang N, Hao Z, Li S, Wang Q. Correction: Liu et al. The Discovery of Novel Agents against Staphylococcus aureus by Targeting Sortase A: A Combination of Virtual Screening and Experimental Validation. Pharmaceuticals 2024, 17, 58. Pharmaceuticals. 2024; 17(4):453. https://doi.org/10.3390/ph17040453

Chicago/Turabian Style

Liu, Kang, Jiangbo Tong, Xu Liu, Dan Liang, Fangzhe Ren, Nan Jiang, Zhenyu Hao, Shixin Li, and Qiang Wang. 2024. "Correction: Liu et al. The Discovery of Novel Agents against Staphylococcus aureus by Targeting Sortase A: A Combination of Virtual Screening and Experimental Validation. Pharmaceuticals 2024, 17, 58" Pharmaceuticals 17, no. 4: 453. https://doi.org/10.3390/ph17040453

APA Style

Liu, K., Tong, J., Liu, X., Liang, D., Ren, F., Jiang, N., Hao, Z., Li, S., & Wang, Q. (2024). Correction: Liu et al. The Discovery of Novel Agents against Staphylococcus aureus by Targeting Sortase A: A Combination of Virtual Screening and Experimental Validation. Pharmaceuticals 2024, 17, 58. Pharmaceuticals, 17(4), 453. https://doi.org/10.3390/ph17040453

Note that from the first issue of 2016, this journal uses article numbers instead of page numbers. See further details here.

Article Metrics

Back to TopTop