Environmental DNA as Early Warning for Alien Species in Mediterranean Coastal Lagoons: Implications for Conservation and Management
Abstract
:1. Introduction
2. Materials and Methods
2.1. Study Area and Sampling Protocol
2.2. Penaeus Aztecus Species-Specific Primer Pairs Design
2.3. DNA Barcoding Approach
2.4. Mapping of Previous Observations in the Mediterranean Sea
2.5. Environmental DNA (eDNA) Barcoding for NIS Biomonitoring
2.6. Maximum Likelihood Species Delimitation Analysis
3. Results
3.1. Early Warning and Taxonomic Validation
3.2. Validation of the Presence of P. aztecus DNA in Water
3.3. Maximum Likelihood Species Delimitation
3.4. Distribution of P. aztecus in the Mediterranean Sea
4. Discussion
Supplementary Materials
Author Contributions
Funding
Institutional Review Board Statement
Data Availability Statement
Conflicts of Interest
References
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Sequence | Taxonomic Annotation | Query Cover | Percentage of Identity |
---|---|---|---|
DNA_Pazt_Rev4_1 | Penaeus aztecus | 99% | 99.50% |
DNA_Pazt_Rev4_2 | Penaeus aztecus | 100% | 99.75% |
eDNA_Pazt_For3 | Penaeus aztecus | 100% | 100% |
eDNA_Pazt_Rev4 | Penaeus aztecus | 100% | 100% |
Locality and the First Observation | Reference |
---|---|
Serik 2009 | [31] |
Papanika Lagoon 2012 | [32] |
Papapouli Lagoon 2012 | [32] |
Nile Delta 2012 | [33] |
Gulf of Antalya 2013 | [34] |
Gulf of Finike 2013 | [34] |
Gulf of İskenderun 2013 | [34] |
Yumurtalık 2013 | [34] |
Corfu Island 2013 | [35] |
Thermaikos Gulf 2013 | [36] |
Boka Kotorska Bay 2013 | [37] |
Argolikos Gulf 2013 | [38] |
Kyllini 2014 | [39] |
Castiglione della Pescaia 2014 | [40] |
Follonica Gulf 2014 | [40] |
Chalki Island 2014 | [41] |
Nestos River estuaries 2014 | [38] |
Le Grau-du-Roi 2015 | [42] |
Palmahim 2015 | [42] |
Gela 2015 | [43] |
Mazzara del Vallo 2015 | [43] |
Porto Empedocle 2015 | [43] |
Bari 2015 | [44] |
Pescara 2015 | [44] |
Çandarlı Bay 2016 | [45] |
Ildır Bay 2016 | [45] |
Termoli 2016 | [44] |
The Ibrice 2016 | [46] |
Hvarski kanal 2016 | [47] |
Vivari Lagoon 2017 | [48] |
The Bozkurt 2017 | [46] |
İskenderun Bay 2017 | [49] |
Mersin Bay 2017 | [49] |
Neretvanski kanal 2017 | [47] |
Marzamemi 2018 | [50] |
Pozzallo 2018 | [50] |
Vlora Bay 2018 | [50] |
Murtersko more 2018 | [47] |
Viški kanal 2018 | [47] |
Cape Teulada 2019 | [51] |
Cavtat 2019 | [47] |
Tunisi Gulf 2020 | [52] |
Abu-Qir 2020 | [53] |
Umm-Hufayn Lagoon 2020 | [54] |
Ancona 2021 | [55] |
Porto Civitanova 2021 | [55] |
Roccella Ionica 2021 | [55] |
San Benedetto del Tronto 2021 | [55] |
Aquatina di Frigole 2022 | Present Study |
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Zangaro, F.; Pinna, M.; Specchia, V. Environmental DNA as Early Warning for Alien Species in Mediterranean Coastal Lagoons: Implications for Conservation and Management. Diversity 2024, 16, 525. https://doi.org/10.3390/d16090525
Zangaro F, Pinna M, Specchia V. Environmental DNA as Early Warning for Alien Species in Mediterranean Coastal Lagoons: Implications for Conservation and Management. Diversity. 2024; 16(9):525. https://doi.org/10.3390/d16090525
Chicago/Turabian StyleZangaro, Francesco, Maurizio Pinna, and Valeria Specchia. 2024. "Environmental DNA as Early Warning for Alien Species in Mediterranean Coastal Lagoons: Implications for Conservation and Management" Diversity 16, no. 9: 525. https://doi.org/10.3390/d16090525
APA StyleZangaro, F., Pinna, M., & Specchia, V. (2024). Environmental DNA as Early Warning for Alien Species in Mediterranean Coastal Lagoons: Implications for Conservation and Management. Diversity, 16(9), 525. https://doi.org/10.3390/d16090525