Biodegradation of Biodegradable Polymers in Mesophilic Aerobic Environments
Abstract
:1. Introduction
2. Bio- and Fossil-Based Biodegradable Polymer Classification
3. Abiotic and Biotic Polymer Degradation Mechanisms
3.1. Mechanical Degradation
3.2. Thermal Degradation
3.3. Photodegradation
3.4. Ozone Degradation
3.5. Hydrolytic Degradation
3.6. Biotic Enzymatic Degradation
3.6.1. Biofilm Formation
3.6.2. Depolymerization
- Enzyme availability. Availability is determined by the type of microorganisms and the environment.
- Available sites on the polymer for enzyme attack. Extracellular enzymes are classified as exo- and endo-enzymes. Exo-enzymes are responsible for chain end scission, while endo-enzymes are responsible for random chain scission [115].
- Enzyme specificity. Enzymes are known as catalysts of biochemical reactions with high substrate specificity. This means that an enzyme catalyzes a special reaction with high efficiency. Therefore, many different reactions catalyzed by different enzymes can run in parallel simultaneously. The specificity is a function of the three-dimensional structure of the enzyme [115].
- Presence of cofactors. Cofactors are additional chemical groups incorporated to the structure of the active site of the enzyme to facilitate a biochemical reaction. Cofactors can be metal ions (e.g., calcium, magnesium, potassium, sodium, or zinc) or co-enzymes (organic cofactors). A common function of cofactors is to provide a geometric place for the substrate to bind to the enzyme by maintaining the stability and activity of the enzyme at the active site [116].
3.6.3. Bioassimilation
3.6.4. Mineralization
4. Biodegradation Environments
4.1. Soil Environment
4.2. Home and Industrial Composting Environment
4.3. Aquatic Environment
5. Factors and Properties That Affect the Degradation Rate
5.1. Environmental Factors
5.1.1. Heat
5.1.2. Moisture
5.1.3. Acidic and Alkaline Media
5.1.4. Light and UV Radiation
5.1.5. C/N Ratio
5.1.6. Oxygen Flow and Porosity
5.2. Polymer Properties
5.2.1. Bulk Properties
5.2.2. Surface Properties
6. Biodegradation Assessment
6.1. Standards for Evaluation of Biodegradation at Mesophilic Conditions
6.2. Methods for Biodegradation Assessment
6.2.1. Mass Loss and Mechanical Properties Deterioration
6.2.2. Macro and Micro Visual Analysis of the Polymer Surface
6.2.3. Chromatography
6.2.4. Spectroscopy
6.2.5. Plate (Clear Zone Formation) and Turbidimetry Assays
6.2.6. Respirometric Tests for CO2 Evolution and Biochemical O2 Demand
6.2.7. Radiolabeling
7. Microorganisms and Enzymes Able to Biodegrade Polymers
7.1. Microbial Population
Enzymes * | Microorganism * | Environment | Polymer | T (°C), pH | Optimal Conditions of T (°C) and pH | Reference |
---|---|---|---|---|---|---|
Alcalase (3.4.21.62) | Bacillus licheniformis (B) | Buffer solution | PLA | 40, 8.0 | 60, 9.5 | [299] |
Amidase (3.5.14)/esterase (55 kDa) | Rhodococcus equi strain TB-60 | Soil/culture | PU | 30, 7 | 45, 5.5 | [300] |
Carboxyl esterase (3.1.1.1) | Alcanivorax borkumensis (B), Rhodopseudomonas palustris (B) | Culture | PCL, PDLLA, PBSA | 30, 8.0 | 30–37, 9.5–10 | [301] |
Carboxyl esterase | Alcanivorax borkumensis (B) | Culture | PES, PHBV, PDLLA | 30, 8.0 | 55–60, 9.5–10 | [301] |
Chymotrypsin (3.4.21.1) | - | Culture | PLLA, PEA | 37, 7.0 | -, - | [302] |
Cutinase (3.1.1.74) (21.6 kDa) | Aspergillus oryzae RIB40 (F) | Culture | PBS, PBSA, PLA | 37, 8.0 | 35–55, 9.0 | [188] |
Cutinase | Alternaria brassicicola (F), Aspergillus fumigatus (F), Aspergillus oryzae (F), Humicola insolens (F), Fusarium solani (F) | Culture | PCL | 40, 3, 5, 8 | -, - | [303] |
Cutinase | Fusarium solani (F) | Buffer solution | PBAT | 30, - | -, - | [148] |
Cutinase (21 kDa) | Cryptococcus magnus (F) | Larval midgut of stag beetle (Aegus laevicollis)/culture | PBS, PBSA, PCL, PDLLA, PLLA | 30, 7.4 | 40, 7.5 | [304] |
Cutinase | Fusarium solani (F) | Buffer solution | PCL | 37, 7.2 | -, - | [305] |
Cutinase (20 kDa) | Fusarium sp. FS1301 (F) | Soil/liquid culture | PBS, PCL | 30, - | 50, 8.0 | [306] |
Cutinase (19.7 kDa) | Paraphoma-related fungal strain B47-9 (F) | Barely phyllophane/liquid culture | PBAT, PBS, PBSA, PCL, PDLLA | 30, 7.2 | 45, 7.2 | [307] |
Cutinase | Pichia pastoris (F) | Buffer solution | PBS | 37, 7.4 | -, - | [308] |
Cutinase | - | Culture | PBS, PBA | 37, 7.4 | -, - | [309] |
Cutinase (20.3 kDa) | Pseudozyma antarctica JCM 10,317 (Y) | Culture | PBS, PBSA, PCL, PLLA, PDLLA | 30 | 40, 9.5 | [310,311] |
Cutinase | Fusarium solani (F), Fusarium moniliforme (F) | Culture | PCL | 22 | 9–10 | [312] |
Cutinase | Bacillus sp. KY0701 | Culture | PCL | 30, 7 | 50, 7 | [313] |
Cutinase | Aspergillus oryzae (F) | Buffer solution | PCL | 40, 8 | -, - | [314] |
Cutinase | Pseudozyma jejuensis OL71 (F) | Leaves of Citrus unshiu/culture | PCL | 30, - | -, - | [315] |
Cutinase-like enzyme (22 kDa) | Cryptococcus flavus GB-1 (Y) | Culture | PBSA | 30, 6.8 | 45, 7.8 | [316] |
Cutinase-like enzyme | Cryptococcus sp. Strain S-2 (F) | Liquid culture | PBS, PLA, PCL | 30, - | 37, 7.0 | [317] |
Close related to Cutinase | Pseudomonas pachastrellae JCM12285T (B) | Marine, coastal seawater/culture | PCL | 30, - | -, - | [318] |
Elastase | - | Culture | PLA | 37, 7.0 | -, - | [302] |
Esterase (3.1.1.1) | Aspergillus sp. Strain S45 (F) | Solid waste dump site/liquid culture | PU | 30, 7.0 | -, - | [249] |
Esterase | Bacillus sp. AF8 (B), Pseudomonas sp. AF9 (B), Micrococcus sp. 10 (B), Arthrobacter sp. AF11 (B), Corynebacterium sp. AF12 (B) | Soil/culture | PU | 30–35 | -, - | [258] |
Esterase | Hog liver | Buffer solution | PGA | 37, 7.5 | -, - | [319] |
Esterase | Bacillus subtilis (B) | Buffer solution | PCL, PLA | 37, - | -, - | [266] |
Esterase | Aspergillus tubingensis (F) | Soil/solid and liquid culture | PU | (30, 37, 40), (5–9) | 37, 7.0 | [320] |
Esterase | Bacillus licheniformis (B) | Compost/liquid culture | PLLA | 32, 7.4 | -, - | [321] |
Esterase | Alicycliphilus sp. (B) | Culture | PU | 37, 7 | -, - | [322] |
Esterase | Leptothrix sp. TB-71 (B) | Soil, fresh water/culture | PBSA, PES, PCL | 30, - | -, - | [323] |
Esterase (62 kDa) | Comamonas acidovorans strain TB-35 (B) | Soil/liquid culture | PU | 30, 7.2 | 45, 6.5 | [324,325,326] |
Esterase (28 kDa) | Curvularia senegalensis (F) | Soil/liquid culture | PU | (21–25), 30, 35, 45, (4.0–8.0) | -, 7–8 | [327] |
Esterase (42 kDa) | Comamonas acidovorans (B) | Culture | PU | 30, 5–8 | -, - | [328] |
Esterase | Penicillium verrucosum (F), Aspergillus ustus (F) | Compost soil/culture | PLA | 30, 5.6 | -, - | [329] |
Esterase | Pseudomonas aeruginosa MZA-85 (B), Bacillus subtilis MZA-75 (B) | Soil/liquid culture | PU | 37, 7.0 | -, - | [254,255,256] |
Esterase | Pseudomonas aeruginosa strain S3 (B) | Culture | PLA | 30–37, 8 | 37, 8 | [330] |
Esterase | Pseudomonas (B) | Soil/Culture | PES | 30, - | -, - | [189] |
Esterase | Porcine liver | Buffer solution | PLA | 40, 8.0 | 40, 8.0 | [299] |
Close related to esterase | Bacillus pumilus strain KT1012 (B) | Soil, water/culture | PES, PCL | 30, 7.0 | 40–45, - | [331] |
Lipase (3.1.1.3) | Rhizopus delemar (F) | Buffer solution | PLA | 37, 7.2 | -, - | [332] |
Lipase | Acidovorax delafieldii Strain BS-3 (B) | Soil/solid and emulsified substrate | PBS, PBSA | 30, 7.0 | -, - | [333] |
Lipase | Rhizopus oryzae (F), Burkholderia sp. (B) | Liquid culture | PCL | 30, - | -, - | [317] |
Lipase | Candida rugosa (F) | Buffer solution | PCL, PLA | 37, - | -, - | [266] |
Lipase (36 kDa) | Aspergillus niger MTCC 2594 (F) | Liquid culture | PCL, PLA | 30, 7 | 37, 7.0 | [334] |
Lipase | Aspergillus oryzae (F) | Buffer solution | PCL | 37, 7.0 | -, - | [335] |
Lipase | Aspergillus tubingensis (F) | Soil/solid and liquid culture | PU | (30, 37, 40), (5–9) | 37, 5.0 | [320] |
Lipase | Burkholderia cepacia PBSA-1 (B), Pseudomonas aeruginosa PBSA-2 (B) | Soil/culture | PBSA | 27, 37 | -, | [259] |
Lipase | Candida cylindracea (F) | Buffer solution | PLA | 40, 8.0 | 40, 8.0 | [299] |
Lipase | Candida antarctica (F) | Buffer solution | PCL, PBS | 45, 7.2 | -, - | [305,336,337] |
Lipase | Candida rugosa (F) | Liquid culture | PU | (20–50), (4–9) | 35, 7.0 | [338] |
Lipase | Chromobacterium viscosum (B), Rhizopus orizae (F), Rhizopus niveus (F) | Culture | PCL, PBS, PBSA | 37, 7.0 | -, - | [339] |
Lipase (23 kDa) | Cryptococcus sp. MTCC 5455 (F) | Liquid culture | PBAT | 25, - | -, - | [340] |
Lipase | Cryptococcus sp. MTCC 5455 (F) | Buffer solution | PU | 30, 7.0 | 37, (7.0–8.0) | [341] |
Lipase | Lactobacillus plantarum (B) | Culture | PCL | 37, 8.0 | -, - | [342] |
Lipase (25 kDa) | Penicillium sp. Strain 14-3 (F) | Soil/liquid culture | PEA | 30, 6.0 | 45, 4.5 | [343] |
Lipase | Pseudomonas (B) | Buffer solution | PLLA, PCL, PDLLA | 37, 7.0 | -, - | [344,345] |
Lipase | Pseudomonas cepacia (B) | Buffer solution | PCL | 37, 7,0 | -, - | [207] |
Lipase | Pseudomonas cepacia (B), Rhizopus delemar (F) | Buffer solution | PCL, PPS | 30, 7.2 | -, - | [346] |
Lipase | Pseudomonas fluorescens (B) | Buffer solution | PCL | 37, 7.4 | -, - | [347] |
Lipase (22 kDa) | Cryptococcus sp. (Y) | Buffer solution | PBS, PBSA | 30, 7 | -, - | [348] |
Lipase | Fusarium solani (F) | Culture | PCL | 22, 6.8 | -, - | [349] |
Lipase (34 kDa) | Pseudomonas sp. Strain DS04-T (B) | Activated Sludge/liquid medium | PLLA, PCL, PHB | 37, 8 | 50, 8.5 | [350] |
Lipase | Rhizopus oryzae (F) | Solution | PBS, PLLA, PBA | 40, 5 | 40, 7 | [271] |
Lipase | Rhizopus arrhizus (F) | Buffer solution | PCL | 30, 7 | -, - | [187] |
Lipase | Pseudomonas (B) | Buffer solution | PCL | 25, 37, 7 | -, - | [351] |
Lipase | Rhizopus oryzae (F) | Buffer solution | PBAT | 30, - | -, - | [148] |
Lipase | Rhizopus delemar (F) | Buffer solution | PU | 37, - | -, - | [352] |
Lipase | Pseudomonas (B) | Buffer solution | PCL | 37, 7 | -, - | [353] |
Lipase | Achromobacter sp (B), Candida cylindracea (F), Rhizopus arrhizus (F), Rhizopus delemar (F), Geotrichum candidum (F) | Buffer solution | PEA, PCL | 37, 7.0 | -, - | [354] |
Lipase | Bacillus sp. (B) | Soil/culture buffer solution | PBAT | 30–37, 7.4 | -, - | [355] |
Lipase | Pseudomonas sp. (B) | Buffer solution | PEA | 37, 7.0 | -, - | [356] |
Lipase | Stenotrophomonas sp. YCJ1 | Soil/culture | PBAT | 30, 7.2 | 37, 7.5 | [357] |
Lipase | Candida Antarctica (F) | Buffer solution | PBAT | 45, 7.2 | -, - | [358] |
PBAT hydrolase (closely related to lipase) | Rhodococcus fascians NKCM 2511 (B) | Soil/liquid culture | PBAT, PCL, PBSA, PES, PBS (low activity) | 25, - | -, - | [267] |
PBAT hydrolase (closely related to cutinase) (18.9 kDa) | Rhodococcus fascians (B) | Liquid culture | PBAT, PCL, PBSA, PES, PBS | 30, 7 | -, - | [359] |
PBAT hydrolase (closely related to Lipase) | Bacillus pumilus (B) (NKCM3101, NCKM3201, NCKM3202, KT1012), Brevibacillus choshinensis PBATH (B) | Soil/liquid culture | PBAT (low activity), PBSA, PBS, PES, PCL | 30, 7.0 | -, - | [95] |
PLA depolymerase (related to lipase) | Paenibacillus amylolyticus Strain TB-13 (B) | Soil/culture | PBS, PBSA, PDLLA, PCL, PES | 37, 8 | 45–55, 10.0 | [360] |
PBAT hydrolase | Isaria fumosorosea strain NKCM1712 (F) | Soil/culture | PBAT, PBA, PBS, PBSA, PES, PHB, PCL | 25–45, 7.0 | -, - | [268] |
PBS-degrading enzyme (44.7 kDa) | Aspergillus sp. XH0501-a (F) | Soil/culture | PBSA | 30 | 40, 8.6 | [361] |
PCL depolymerase (63.5 kDa) (esterase) | Brevundimonas sp. strain MRL-AN1 (B) | Liquid culture | PCL, PLA, PES, PHB, and PHBV | 37, 7 | 30, 6–8 | [362] |
PCL depolymerase | Penicillium oxalicum strain DSYD05-1 (F) | Soil/liquid culture | PCL, PHB, PBS | 30, 6.8 | -, - | [363] |
PCL depolymerase | Alcaligenes faecalis TS22 (B) | Culture | PCL | 30, - | -, - | [364] |
PCL depolymerase | Paecilomyces lilacinus strain D218 (F) | Soil/solid culture | PCL | 30, 5.2 | 30, 3.5–4.5 | [365] |
PLA depolymerase (58 kDa) | Pseudomonas tamsuii TKU015 (B) | Soil/culture | PLLA | 30, 7.0 | 60, 10 | [366] |
PLLA degrading enzyme | Actinomadura keratinilytica T16-1 (B) | Culture | PLLA | 45, 7 | 45, 6–8 | [367] |
PHA depolymerase (3.1.1.76) | Alcaligenes faecalis (B) | Buffer solution | PHB, PHBV, PHA | 37, 7.4 | -, - | [368] |
PHA depolymerase (48 kDa) | Pseudomonas stutzeri YM1414 (B) | Fresh water/buffer solution | PHB | 37, 7.4 | 55, 9.5 | [369] |
PHA depolymerase | Ralstonia pickettii T1 (B) | Buffer solution | PHB, PHBV | 37, 7.5 | -, - | [179] |
PHA depolymerase | Ralstonia pikettii T1 (B), Acidovorax sp. TP4 (B) | Buffer solution | PHA | 37, 38, 7.5, 8.0 | -, - | [370] |
PHA depolymerase | Comamonas sp. DSM 6781 (B), Pseudomonas lemoignei LMG 2207 (B), Pseudomonas fluorescens GK13 DSM 7139 (B) | Liquid culture | PHB, PHV, PHBV | 30, 7.2 | -, - | [371] |
PHA depolymerase (50 kDa) | Comamonas testosteroni (B) | Buffer solution | PHB, PHBV | 37, 7.4 | -, 9.5–10 | [372] |
PHA depolymerases (33.8 and 59.4 kDa) | Pseudomona mendocina DS04-T (B) | Mineral medium | PHB, PHBV | 37, - | 50, 8 and 8.5 | [373] |
PHA depolymerase (intracellular) | Pseudomonas putida LS46 (B) | Culture | PHB, PCL, PES | 30, 7 | -, - | [374] |
PHB depolymerase (3.1.1.75) | Alcaligenes faecalis (B) | Culture | PHB | 37, 7.4 | -, - | [375] |
PHB depolymerase | Alcaligenes faecalis (B), Pseudomonas stutzeri (B), Comamonas acidovorans (B) | Buffer solution | PHB, PEA, PES | 37, 7.4 | -, - | [376] |
PHB depolymerase (57 kDa) | Aspergillus fumigatus (F) | Buffer solution | PHB, PHBV, PEA, PES | 45, 8.0 | 70, 8 | [377,378] |
PHB depolymerase (49 kDa) | Comamonas testosteroni strain ATSU (B) | Soil/culture | PHB, PHBV | 37, 7.4 | 70, 8.5 | [379] |
PHB depolymerase (42.7) | Aureobacterium saperdae (B) | Buffer solution | PHB | 37, 7 | 45, 8 | [380] |
PHB depolymerase (57 kDa) | Aspergillus fumigatus 76T-3 | PHB, PES, PBS | 45, - | 55, 6.4 | [381] | |
PHB depolymerase (50–48 kDa) | Emericellopsis minima W2 (F) | Wastewater/liquid culture | PHB, PHBV | 30, 8.0 | 55, 9.0 | [382] |
PHB depolymerase (40 kDa) | Microbacterium paraoxydans RZS6 (B) | Dumping yard/culture | PHB | 30, - | 30, 7 | [383] |
PHB depolymerase (46.8 kDa) | Penicillium sp. DS9701-D2 (F) | Activated sludge/culture | PHB | 28–30, 6.8 | 30, 5 | [384] |
PHB depolymerase | Streptoverticillium kashmirense AF1 (A) | Sewage sludge/culture | PHBV | 30, 8 | -, - | [385] |
PHB depolymerase (50 kDa) | Acidovorax sp. strain TP4 (B) | Pond water, river water, farm soil/culture | PHB | 30, 8.5 | -, - | [386] |
PHB depolymerase (47 kDa) | Arthrobacter sp. strain W6 (B) | Soil/culture broth | PHB, PHBV | 30, 7 | 50, 8.5 | [387] |
PHB depolymerase (85 kDa) | Fusarium solani Thom (F) | Wastewater/culture | PHB | 25, 8 | 55, 7 | [388] |
PHB depolymerase (62.3 kDa) | Bacillus megaterium N-18-25-9 (B) | Culture | PHB | 30–37, 9 | 65, 9 | [389] |
PHB depolymerase (44.8 kDa) | Penicillium sp. (F) | Culture | PHB | 40, 4–6 | 50, 5 | [390] |
PHB depolymerase (61.8–70 kDa) | Marinobacter sp. NK-1 (B) | Culture | PHB | 37, 7.4 | -, 8 | [391,392] |
PHB depolymerase | Nocardiopsis aegyptia sp. nov. DSM 44442T (B) | Marine seashore sediments/culture | PHB, PHBV | 30, 7 | -, - | [393] |
PHB depolymerase (33 kDa) | Penicillium funiculosum (F) | Culture | PHB | 30, 7.5 | -, 6.5 | [394] |
PHB depolymerase (36 kDa) | Penicillium simplicissimum LAR13 (F) | Soil/culture | PHB | 25, 30, 37, - | 45, 5.0 | [395] |
PHB depolymerase | Paecilomyces lilacinus D218 (F) | Soil/liquid culture | PHB, PCL | 30, 6.0 | 50, 6.5–7.5 | [365] |
PHB depolymerase | Pseudomonas fluorescens (B), Pseudomonas aeruginosa (B), Pseudomonas putida (B) | Contaminated soil/culture | PHB, PHBV | 30, 7.9 | -, - | [116] |
PHB depolymerase (48 kDa) | Comamonas acidovorans YM1609 (B) | Freshwater/culture | PHB, PHBV | 37, 7.4 | -, - | [396] |
PHB depolymerase | Pseudomonas stutzeri (B) | Sea water/Buffer solution | PHB | 30–45, 7.4 | -, 7–7.5 | [397] |
PHB depolymerases (44, 46 kDa) | Agrobacterium sp. K-03 (B) | Culture | PHB, PHBV | 30, 8 | 45, 7,9 and 8.1 | [398] |
PHB depolymerase (49 kDa) | Streptomyces exfoliatus K10 (B) | Culture | PHB | 25–37, 8 | 40, 8.5–9 | [399] |
PHB depolymerase (40 kDa) | Pseudomonas pickettii (B) | Culture | PHB | 37, 7.4 | 40, 5.5 | [400] |
PHB depolymerase (53 kDa) | Comamonas sp. (B) | Solid culture | PHB | 37, 8 | -, - | [401] |
PHB depolymerase (65 kDa) | Alcaligenes faecalis AE122 (B) | Seawater/culture | PHB | 37, | -, - | [402] |
PHB depolymerase (95.5 kDa) | Alcaligenes faecalis AE122 (B) | Seawater/culture | PHB | 30, 6.8–7.5 | 55, 9 | [403] |
PHB depolymerase (40 kDa) | Aspergillus fumigatus (F) | Culture | PHB | 30–32, 8 | -, - | [404] |
PHB depolymerase (48 kDa) | Alcaligenes faecalis T1 (B) | Activated sludge/culture | PHB | 30, 7.5 | -, 7.5 | [405] |
PHB depolymerase | Ralstonia pikettii (B) | Culture | PHB, PHBV | 20, 7.5 | -, - | [278] |
PHB depolymerase (45 kDa) | Paecilomyces lilacinus F4-5 (F) | Soil/culture | PHB, PHBV | 27–37, 7 | 50, 7 | [406] |
PHB depolymerase (52.2 kDa) | Diaphorobacter sp. PCA039 (B) | Culture | PHB, PHBV | 30, - | 45, 8 | [407] |
PHB depolymerase (63.7 kDa) | Aspergillus fumigatus 202 (F) | Soil/culture | PHB | 30, 37, 45, 7 | 45, 7 | [408] |
PHB depolymerase (20 kDa) | Penicillium expansum (F) | Wastewater/culture | PHB | 30, 5 | 50, 5 | [409] |
PHB depolymerase | Streptomyces sp. SNG9 (B) | Marine/liquid culture | PHB, PHBV | 30, 7 | -, - | [410] |
PHB depolymerase (45 kDa) | Bacillus (B), Clostridium (B), Streptomyces (B), Alcaligenes (B), Comamonas (B), Pseudomonas (B), Zoogloea (B) | Soil, lake water, activated sludge, air/liquid culture | PHB, PHV, PHBV | 4–58, 4.8–10.6 | 29–35, 9.4 | [411] |
PHB depolymerase (37 kDa) | Penicillium funiculosum (F) | Culture | PHB | 30, 5 | -, 6 | [412] |
PHB depolymerase (48 kDa) | Paecilomyces lilacinus D218 | Buffer solution | PHB, PHBV | 30, 6.8 | 45, 7 | [413] |
PHB depolymerase | Aspergillus clavatus strain NKCM1003 (F) | Soil/culture | PES, PHB, PCL, PBS | 30, - | -, - | [414] |
PHBV depolymerase (36, 68, 72, 90 kDa) | Aspergillus sp. NA-25 (F) | Soil/solid culture | PHBV | 30, 7.0 | 45, 7.0 | [415] |
PHBV depolymerase (43.4 kDa) | Acidovorax sp. HB01 | Activated sludge/ | PHBV, PHB, PCL | 37, 6.8 | 50, 7 | [416] |
PHBV depolymerase (51 kDa) | Streptomyces sp. strain AF-111 (B) | Sewage sludge/culture | PHBV | 30–37, | 35–55, 7–8 | [417] |
PHV depolymerase (43.6 kDa) | Pseudomonas lemoignei (B) | Liquid culture | PHB, PHV | 37, 8 | -, - | [418,419] |
Polyurethanase—lipase (28 kDa) | Bacillus subtilis (B) | Soil/liquid culture | PU | 30, 7 | -, - | [420] |
Polyurethanase esterase (27 kDa) | Pseudomonas chlororaphis (B) | Liquid culture | PU | 30, 7.2 | -, 7–8 | [421] |
Polyurethanase esterase/protease (63 kDa), Polyurethanase esterase (31 kDa) | Pseudomonas chlororaphis (B) | Yeast extract salts medium | PU | 30, - | -, 8.5 and 7 | [422] |
Polyurethanase protease (29 kDa) | Pseudomonas fluorescens (B) | Liquid culture | PU | 30, 7.2 | 25, 5.0 | [423] |
Polyurethanase lipase | Pseudomonas protegens strain Pf-5 (B) | Liquid culture | PU | 27, 7.4 | -, - | [424] |
Polyurethanase (66 kDa) | Acinetobacter gerneri P7 (B) | Liquid culture | PU | 30, 7.0 | 37, 8.0 | [425] |
Polyurethanase—protease | Alternaria solani Ss1-3 (F) | Soil/liquid culture | PU | (20–35), (4.0–8.0) | 30, 7.0 | [426] |
Polyurethanase—esterase and amidase | Alicycliphilus sp. BQ8 (B) | Liquid culture | PU | 37, 7.0 | -, - | [427] |
Polyurethanase serine hydrolase family (21 kDa) | Pseudomonas chlororaphis (B), Pestalotiopsis microspora (E2712A, 3317B) (F), Lasiodiplodia sp. E2611A (F), Bionectria sp. strain E2910B (F), Aspergillus niger (F), Pleosporales sp. E2812A (F) | Soil/liquid culture | PU | 30, - | -, - | [428] |
Protease (3.4.21) | Amycolatopsis orientalis (A) | Liquid culture | PLLA | 30–40, 7.0 | -, - | [429] |
Protease | Bacillus licheniformis (B) | Buffer solution | PLA | 37, - | -, - | [266] |
Protease | Tritirachium album (F), Lentzea waywayandensis (A), Amycolatopsis orientalis (A) | Culture | PLLA | 30, 7 | -, - | [430] |
PLA-degrading enzyme closely related to Protease (40–42 kDa) | Amycolatopsis sp. strain 41 (A) | Soil/liquid culture | PLLA | 37, 7.0 | 37– 45, 6.0 | [431] |
Protease, esterase, and lipase | Amycolatopsis sp. strain SCM_MK2-4 (A) | Soil/liquid, solid culture | PLA, PCL | 30, 7.0 | -, - | [432] |
Protease, PLA-degrading enzyme | Stenotrophomonas pavanii CH1 (B), Pseudomonas geniculata WS3 (B) | Soil, wastewater sludge/liquid culture | PLA | 30, - | 30, 7.530, 8.0 | [433] |
Proteinase K (3.4.21.64) | - | Buffer solution | PLLA | 37, 8.6 | -, - | [187] |
Proteinase K | - | Buffer solution | Amorphous PLLA (not crystalline PLLA) | 37, 8.6 | -, - | [344] |
Proteinase K | Tritirachium album | Liquid culture | PLA | 30, - | -, - | [317] |
Proteinase K | - | Culture | PLLA, PES, PEA, PBS, PBSA, PCL | 37, 7.0 | -, - | [302] |
Proteinase K | - | Culture | PLLA | 37, 8.6. | -, - | [69,186] |
Proteinase K | Tritirachium album | Buffer solution | PLA | 37, - | -, - | [266] |
(PVAase)-Cu3(PO4)2 | Bacillus niacini (B) | Culture | PVOH | 30, 8.0 | 30, 7 | [434] |
PVOH oxidase (1.1.3.30) | Sphingomonas sp. (B) | Activated sludge/culture | PVOH | 25, 7.5 | -, - | [435] |
PVOH oxidase | Sphingopyxis sp. PVA3 (B) | Activated sludge/culture | PVOH | 30, 7.2 | -, - | [436] |
PVOH-degrading enzyme (30 kDa) | Pseudomonas (B) | Buffer solution | PVOH | 27, 7.3 | 40, 7–9 | [437] |
PVOH-degrading enzyme | Streptomyces venezuelae GY1 | Culture | PVOH | 30, 8 | -, - | [438] |
PVOH-degrading enzyme | Penicillium sp. WSH0-21 (F) | Activated sludge/culture | PVOH | 30, 7 | -, - | [439] |
PVOH-degrading enzyme (67 kDa) | Alcaligenes faecalis KK314 | River water/culture | PVOH | 30, 7.2 | -, - | [440] |
Serine enzyme (3.4.21) (24 kDa) | Amycolatopsis sp. strain K104-1 (A) | Soil/liquid medium | PLLA | 37, 7.0 | 55–60, 9.5 | [441] |
Subtilisin (3.4.21.62) | - | Culture | PLA, PEA, PBS, PBSA, PCL | 37, 7.0 | -, - | [302] |
Trypsin (3.4.21.4) | - | Culture | PLA, PEA | 37, 7.0 | -, - | [302] |
Aliphatic–aromatic co-polyester-degrading enzyme (27–31 kDa) | Roseateles depolymerans TB-87 (B) | Soil, fresh water/culture | PBS, PBSA, PCL, PBST, PES | 20–40, 6–11 | 35, 7 | [442,443] |
Esterase and protease activity | Paenibacillus amylolyticus TB-13 (B) | Soil/culture | PLA, PBSA, PBS, PCL, PES | 30, - | -, - | [444] |
Esterase and amidase | - | Buffer solution | PU | 37, 7 | -, - | [445] |
PU esterase (48 kDa) | Pseudomonas fluorescens (B) | Culture | PU | 37, - | -, - | [446] |
Lipase, manganese peroxidase, laccase | Penicillium brevicompactum OVR-5 (F) | Liquid medium | PVOH | 28, - | 30, 7 | [447] |
Fungal peroxidase (1.11.1.7), Laccase (1.10.3.2) | Aspergillus sp. (F) | Buffer solution | PU | 30, 7 | -, - | [448] |
Esterase deacetylase (3.5.1.) | Comamonas sp. strain NyZ500 | Activated sludge/culture | PVOH | 37, - | -, - | [449] |
- | Pseudomonas aeruginosa (B) | Culture | PU | 37, - | -, - | [450] |
- | Nocardioides OK12 | Culture | PHB, PHBV | 30, - | -, - | [451] |
- | Aspergillus flavus (F) | Culture | PU | 28, 6–6.5 | -, - | [452] |
- | Aspergillus versicolor (F) | Culture | PBSA | 30, 7.2 | -, - | [453] |
- | Pseudomonas chlororaphis ATCC 55,729 (B) | Culture | PU (foam) | 29, - | -, - | [454] |
- | Aspergillus fumigatus (F), Paecilomyces farinosus (F), Fusarium solani (F), Penicillium simplicissimum (F), Penicillium minioluteum (F), Penicillium pinophilum (F), Penicillium funiculosum (F) | Activated sludge soil/farm soil | PHB | 28, 37, - | -, - | [251] |
- | Pseudonocardia sp. RM423 (A) | Culture | PLA | 30, 7 | -, - | [227] |
- | Fusarium solani (F), Candida ethanolica (F) | Compost, Soil | PU | 25, 45 | -, - | [455] |
- | Enterobacter sp. IBP-VN1 (B), Bacillus sp. IBP-VN2 (B), Gracilibacillus sp. IBP-VN3 (B), Enterobacter sp. IBP-VN4 (B), Enterobacter sp. IBP-VN5 (B), Enterobacter sp. IBP-VN6 (B) | Seawater/culture | PHB, PHBV | 27.1–30.4, 7.0–7.5 | -, - | [456] |
- | Acidovorax delafieldii (B7-7, B7-21, B7-28) (B), Streptomyces acidiscabies A2–21 (A), Streptomyces griseus A2–10 (A), Fusarium oxysporium F1–3 (F), Paecilomyces lilacinus F4–5 (F), Paecilomyces farinosus F4–7 (F) | Natural Soil/incubated artificial soil | PHBV | 30, - | -, - | [457] |
- | Pseudomonas aeruginosa (B) | Soil/liquid culture | PDLA | 37, - | -, - | [287] |
- | Fusarium solani WF-6 (F) | Soil/culture | PBS | 30, - | -, - | [458] |
- | Flammulina velutipes (F) | Culture | PVOH | 28, - | -, - | [459] |
- | Aspergillus flavus (F), Aspergillus oryzae (F), Aspergillus parasiticus (F), Aspergillus racemosus spp. (F) | Soil/culture | PHB, PHBV | 28–30, 6–7 | -, - | [460] |
- | Azospirillum brasilense BCRC 12,270 (B) | Liquid culture | PBSA | 30, 7.0 | -, - | [461] |
- | Aspergillus fumigatus (F) | Compost/culture media | PCL | 23, 25, 30, 37, 5.5 | -, - | [183,462] |
- | Aspergillus fumigatus (F) strain NKCM1706 | Soil/culture | PBS, PBSA, PES, PHB, PCL | 30, 7 | 30, - | [463] |
- | Leptothrix sp. TB-71 (B) | Culture nutrient broth | PBST, PBAT | 30, - | -, - | [464] |
- | Burkholderia cepacia (B) | Culture | PLLA | 35, 7 | -, - | [465] |
- | Bacillus pumilus strain 1-A (B) | Soil/Culture | PBSA, PBS, PCL | 30, 7.0 | -, - | [466] |
- | Bacillus sp. JY14 (B) | Marine/culture | PHB, PHBV | 30, - | -, - | [467] |
- | Pseudomonas sp. (B) | Marine water/culture | PCL | 25, - | -, - | [468] |
- | Actinomadura AF-555 (A) | Soil/culture | PHBV | 37, - | -, - | [277] |
- | Trichoderma viride (F) | Soil/liquid culture | PLA | 28, - | -, - | [469] |
- | Chryseobacterium S1 (B), Sphingobacterium S2 (B), Pseudomonas aeruginosa (S3, S4) (B) | Compost/liquid culture | PLA | 30, 7.2 | -, - | [470] |
- | Amycolatopsis sp. (SST, SNC, SO1.2, SO1.1) (A) | Soil/basal medium | PLLA | 30, 7 | -, - | [471] |
- | Amycolatopsis sp. (A) | Culture | PLLA, PCL, PHB | 30, 7.3 | -, - | [472] |
- | Amycolatopsis sp strain 3118 (A) | Soil/liquid medium | PLLA | (30, 37, 43, 48), 7.0 | 43, 7.0 | [473] |
- | Amycolatopsis sp. strain HT-32 (A) | Soil/liquid culture | PLLA | 30, 7.0 | -, - | [474] |
- | Amycolatopsis sp. strain KT-s-9 (A) | Soil/liquid medium | PLLA | 30, - | -, - | [475] |
- | Acidovorax facilis (B), Varivorax paradoxus (B), Pseudomonas syringae (B), Comamonas testosteroni (B), Cytophaga jhonsonae (B), Bacillus megaterium (B), Bacillus polymyxia (B), Streptomyces spp. (B), Aspergillus fumigatus (F), Paecilomyces marquandii (F), Penicillium daleae (F), Penicillium simplicissimum (F), Penicillium ochrochloron (F), Penicillium adametzii (F), Penicillium chermisimun (F), Penicillium restrictum (F), Acremonium sp. (F) | Soil/incubated | PHB, PHBV | (15, 28, 40),(3.5, 3.9, 6.3, 6.5, 7.1) | -, - | [476] |
- | Acinetobacter calcoaceticus, Arthrobacter artocyaneus, Bacillus aerophilus, Bacillus megaterium, Bacillus sp., Brevibacillus agri, Brevibacillus invocatus, Chromobacterium violaceum, Cupriavidus gilardii, Mycobacterium fortuitum, Ochrobactrum anthropi, Staphylococcus arlettae, Staphylococcus haemoliticus, Staphylococcus pasteuri, Pseudomonas acephalitica, Rodococcus equi, Bacillus cereus, Bacillus megaterium, Bacillus mycoides, B. agri, Gordoniaterrari, Microbacterium paraoxydans, Burkholderia sp, Streptomyces, Mycobacterium spp, Nocardiopsis, Gongronella butleri, Penicillium, Acremonium recifei, Paecilomyces lilacinus, Trichoderma pseudokoningii, | Soil | PHB, PHBV | (26–31), - | -, - | [477] |
- | Amycolatopsis thailandensis strain CMU-PLA07T (A) | Soil/liquid culture | PLLA | 30, - | -, - | [478] |
- | Bacillus pumilus B12 (B) | Soil/minimal salt medium agar | PLA | 30, - | -, - | [479] |
- | Kibdelosporangium aridum (B) | Solid/liquid culture | PLLA | 30, 6.6–7.8 | -, - | [480] |
- | Lentzea (B), Saccharothrix (A), Amycolaptosis (B), Kibdelosporangium (B), Streptoalloteichus (B) | Culture | PLLA | 30, 7 | -, - | [481] |
- | Pseudonocardia alni AS4.1531T (A) | Soil | PLA | 30, - | -, - | [482] |
- | Saccharothrix waywayandensis (A) | Culture | PLLA | 30, 7 | -, - | [483] |
- | Tritirachium album ATCC 22,563 (F) | Liquid culture with gelatin | PLLA | 30, - | -, - | [484] |
- | Parengyodontium (F), Aspergillus (F), Penicillium (F), Fusarium (F) | Soil/agar medium | PLLA, PCL | 25, 7.0, 6.0 | -, - | [485] |
- | Stenotrophomonas maltophilia LB 2-3 (B) | Compost/Sturm test | PLLA exposed to UV irradiation | 37, 7 | -, - | [72] |
- | Mortierella sp. (F), Doratomyces microsporus (F), Fusarium solani (F), Fennellomyces sp. (F), Aspergillus fumigatus (F), Verticillium sp. (F), Lecanicillium saksenae (F), Cladosporium sp. (F), Trichoderma sp. (F) | Compost, soil | PLLA | 25, 7.2 | -, - | [486] |
- | Bordetella petrii PLA-3 (B) | Compost | PLLA | 30, 37, 7.0 | -, - | [248] |
- | Flammulina velutipes (F) | Quartz sand/culture | PVOH | 28, - | -, - | [459] |
- | Bacillus cereus RA 23 (B) | Oil sludge/culture | PVOH | 30, 7.0 | 28, 7 | [487] |
- | Bacillus sp. (B), Curtobacterium sp. (B) | Sewage sludge/culture | PVOH | 35, 8.0 | -, - | [488] |
- | Eutypella sp. BJ (F) | Soil compost/culture | PVOH | 30, - | -, - | [489] |
- | Geomyces pannorum (F), Phoma sp. (F) | Soil/solid culture | PU | <25, 5.5, 6.7 | -, - | [490] |
- | Geomyces sp. B10I (F), Fusarium sp. B3′M (F), Sclerotinia sp. B11IV (F) | Antarctic soil/liquid culture | PCL, PBS | (14, 20, 28), - | -, - | [290] |
7.2. Extracellular Enzymes
7.2.1. Carboxylesterases
7.2.2. Lipases
7.2.3. Cutinases
7.2.4. PHA, and PHB Depolymerases
7.2.5. Peptidases (Proteinase K and Protease)
7.2.6. Amidases and Ureases
7.2.7. Oxidoreductases PU and PVOH-Oxidases
7.3. Biosurfactants and Synthetic Surfactants
8. Polymers Susceptible to Biodegradation
8.1. Cellulose
8.2. Starch
8.3. Poly(Glycolic Acid)—PGA
8.4. Poly(Lactic Acid)—PLA
8.5. Poly(Caprolactone)—PCL
8.6. Poly(Alkylene Dicarboxylate)s
8.7. Poly(Hydroxyalkanoates)
8.8. Poly(Butylene Adipate-co-Terephthalate)
8.9. Poly(Urethane)—PU from Esters
8.10. Poly(Vinyl Alcohol)—PVOH
9. Final Remarks and Future Perspective
Author Contributions
Funding
Institutional Review Board Statement
Informed Consent Statement
Data Availability Statement
Acknowledgments
Conflicts of Interest
References
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