Non-Coding RNAs in Response to Drought Stress
Abstract
:1. Introduction
2. Long Non-Coding RNAs
2.1. Function of lncRNAs
2.1.1. lncRNAs as Target Mimics
2.1.2. lncRNAs in DNA Modification
3. Small Non-Coding RNAs
3.1. Small Interfering RNAs
3.2. MicroRNAs
miRNAs | Target Gene | Functions | References |
---|---|---|---|
miR156/157 | SPL | Phase transition from vegetative to reproductive phase; flowering | [203] |
miR159 | MYB family | Development of male reproductive organs | [216] |
miR160 | ARF10, ARF16 | Controls root development and gravitropism | [213] |
miR165/166 | HD-ZIPIII | Leaf development and polarity; lamina expansion | [202] |
miR166 | RDD1 | Grain size and weight | [204] |
miR167 | ARF10, ARF16, ARF17 | Floral patterning; controls anther and ovule development | [241] |
ARF6, ARF8 | Stamen and gynoecium and maturation; seed development | [214] | |
miR168 | AGOs | Leaf polarity | [200] |
miR169 | NF-YA | Floral organ identity | [242] |
miR172 | AP2 | Floral patterning and floral organ development; regulates the inner whorl organ differentiation | [243] |
miR319 | TCP | Leaf morphogenesis | [226] |
miR390 | ARF2, ARF3, ARF4 | Leaf development, adaxial identity of leaf blade, lateral organ development and leaf senescence | [172] |
miR394 | Leaf Curling Responsiveness (LCR) | Regulation of leaf curling, shoot meristem differentiation and maintenance in abscisic acid–dependent manner | [244] |
miR396 | Growth Regulating Factors (GRFs) | Adaxial–abaxial polarity of leaf and cell proliferation | [245] |
miR399 | PHO2 | Control of flowering time | [227] |
miR408 | Plantacyanin | Root development | [246] |
miR444 | MADS box | Floral patterning and development control | [247] |
miR824 | MADS-box gene | Formation of stomatal complexes in meristems | [248] |
miR824 | AGL16 | Stomatal development | |
miR848 | IAA28 | Root development and lateral root development | [249] |
miR1218 | NAC3 | Organ separation | [250] |
4. Role of Long and Small Non-Coding RNAs during Drought Stress
4.1. lncRNAs in Drought Stress
4.2. miRNAs in Drought Stress
4.3. Interaction between Long and Small ncRNAs in Drought Stress
5. Conclusions and Perspectives
Author Contributions
Funding
Institutional Review Board Statement
Informed Consent Statement
Conflicts of Interest
References
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Plant | lncRNA Name | Pathway | Functional Annotation | References |
---|---|---|---|---|
Arabidopsis | IPS1 lncRNA | Phosphate homeostasis | Target mimic for miR399, which regulates PHO2, a negative regulator of the phosphate transporters | [112] |
Hidden Treasure 1 (HID1) | Photomorphogenesis | Promotes photomorphogenesis in continuous red light by directly repressing Phytochrome Interacting Factor 3 (PIF3) | [100] | |
ASCO-lncRNA and NSR | Alternate splicing module | Recognizes alternatively spliced mRNA targets | [111] | |
Drought Induced lncRNAs (DRIR) | Drought response | Positively regulates several drought responsive transcripts such as ABA-signal transducers (P5CS1, RD29A,B and ABI5); annexins (ANNAT7) and aquaporins (TIP4, NIP1) | [113] | |
Brassica napus, (Q2 and Qinyou8) | XLOC_042431 and XLOC_071559 | Hormone signaling | Targets BnaC06g05090D gene to regulate ethylene metabolism, IAA, Cytokinins and ABA signaling | [114] |
XLOC_ 095305 and XLOC_100682 | Targets BnaA01g17750D genes to regulate alpha trehalose phosphate synthase | |||
Cassava (TMS60444 and Ku50) | lincRNA340 | Target mimicry | miR169 target mimicry, also targets Nuclear Factor Y (NF-Y) | [115] |
TCONS_00003360, TCONS_00015102, | Signal transduction | Calcium and ABA signaling | [116] | |
TCONS_00149293 | Ethylene metabolism | |||
TCONS_00097416 | Hormone signaling and target mimicry | Targets CSLD5, ERL1 and SPCH genes to modulate ethylene signaling; | ||
TCONS_00069665 | Targets LAX2, HDG11 and SCR genes; and regulates expression by targeting miR156 | |||
TCONS_00060863 TCONS_00068353 | Targets CYP707A1 gene and regulates in ABA catabolism | |||
TCONS_00040721 | MiRNA target | Targets GRF1, HB51 and DOX1; regulates gene expression by targeting miR156, miR164, miR169 and miR172 | ||
Cleistogenes songorica | MSTRG.25585.13 | Metabolic pathway | Regulates sucrose metabolism | [97] |
MSTRG.42613.1 | Regulates starch metabolism | |||
MSTRG.43964.1, MSTRG.4400.2 | Hormone signaling and target mimicry | Targets ABA pathway and related genes, regulates miR164, miR166, miR393 and miR397a,b and act as endogenous target mimic | ||
Panicum virgatum (Alamo) | XLOC_033252 | Hormone signaling | Regulates ABA synthesis and signaling by targeting Pavir.Eb01847 gene | [117] |
Populus trichocarpa (Nisqually 1) | lincRNA20, lincRNA2752, lincRNA2962, lincRNA1039, lincRNA3241 | miRNA regulation | Control drought stress by regulating ptc-miR476 and ptc-miR169 | [118] |
Oryza sativa (DXWR) | lncRNAMSTRG69391 | Transcription regulation | Regulates biological process by targeting genes encoding calmodulin | [96] |
lncRNA MSTRG41712 and MSTRG68635 | Translation inhibition | Targeting genes encoding heat shock protein and mitochondrial carrier proteins | ||
lncRNA MSTRG65848, MSTRG27834 and MSTRG46301 | Differential regulation | Upregulated and downregulated the lncRNAs themselves; response to drought stress and targets several genes | ||
Oryza sativa cv (Ilmi) | NATOs02g0250700–01 andOs02g0180800–01 | Regulate response to drought by targeting Os02g0250600-01 (encodes highly abundant protein during late embryogenesis) and Os02g0180700-01 (encodes Cinnamoyl-CoA reductase) | [119] | |
Triticum aestivum(Kiziltan and TR39477) | c70772_g2_i1 and c90557_g1_i1 | lncRNA-miRNA-mRNA network | Targets c69036_g1_i1 and c9653_g1_i2 genes to regulate drought stress | [120] |
Zea mays | Li_TCONS_00080887, Zhang_TCONS_00012690, Zhang_TCONS_00012690 625-646, Boerner_Z27kG1_14953, Boerner_Z27kG1_09751, Boerner_Z27kG1_15115, Boerner_Z27kG1_08283, Boerner_Z27kG1_16361, Boerner_Z27kG1_23317, Boerner_Z27kG1_13892, Boerner_Z27kG1_01046, Boerner_Z27kG1_22106, Boerner_Z27kG1_03819, Boerner_Z27kG1_17085, Boerner_Z27kG1_06707, Boerner_Z27kG1_17308, Boerner_Z27kG1_01291, Boerner_Z27kG1_22188, Boerner_Z27kG1_15675, Boerner_Z27kG1_06005, Zhang_TCONS_00011169, etc. | miRNA targets or decoys | Targets or decoys of zma-miR156e-3p, zma-miR156h-3p, zma-miR159c,d-3p, zma-miR159e-5p, zma-miR159e-5p, zma-miR160b,g-3p, zma-miR160c-3p, zma-miR160c-3p, zma-miR162-5p, zma-miR164b-3p, zma-miR164d-3p, zma-miR164e-3p, zma-miR166h-5p, zma-miR166i-5p, zma-miR166i-5p, zma-miR166n-5p, zma-miR169c-3p, zma-miR169f-3p, zma-miR169l-3p, zma-miR169m-3p, respectively, etc. | [59] |
Miniature inverted-repeat transposable element (MITE-ZmNAC111) | RNA-directed DNA methylation | Represses ZmNAC111 expression and enhances drought tolerance | [121] | |
lncRNAMSTRG6838.1 | Transcription regulation | Targets V-ATPase- and VPP4-encoding genes and regulates transcription | [122] | |
ZmPHO2, PILNCR1 | Phosphate homeostasis | Targets of Zma-miR399 in response to low phosphate | [123] |
Plant | Number of Putative lncRNAs Identified | Platform of Identification | Functional Annotation | References |
---|---|---|---|---|
Arabidopsis thaliana | 303 | qRT-PCR | Responsive to heat, cold, drought and salt stress | [94] |
Hidden Treasure 1 (HID1) | Northern blotting | Promote photomorphogenesis in continuous red light by directly repressing PIF3 | [100] | |
13,230 | Transcriptome Analysis, published tiling array datasets | Response to drought, cold, high-salt and/or ABA treatments | [98] | |
Banana | 8471 | Transcriptome Analysis, HiSeq | Drought stress-response | [260] |
Cassava | 682 | HiSeq 2500, qRT-PCR, CNCI, CPC | Hormone signal transduction, sucrose metabolism pathway, etc. | [115] |
124 | qRT-PCR | Melatonin responsive, drought stress regulation, cellular metabolism, Calvin cycle, hormone regulation, etc. | [116] | |
1379 | qRT-PCR | Different roles | [261] | |
56,840 | RNA-Seq Transcriptome Analysis | Differential expression in cold or drought conditions | [262] | |
Chickpea | 3457 | RT-qPCR, PLncPRO | Differentially expressed under drought stress | [257] |
Cleistogenes songorica | 3397 | HiSeq2500, CPC, CNCI, CPATqRT-PCR | Regulate drought stress response | [97] |
Dimocarpus longan Lour | 7643 | Real-time qPCR | Early somatic embryogenesis | [134] |
Oryza sativa | 98 | HiSeq 2500, qRT- PCR | Regulatory role in drought response | [119] |
3714 | RT-qPCR, PLncPRO | Differentially expressed under drought stress | [242] | |
Panicum virgatum L | 16,551 | HiSeq2500, qRT-PCR | Regulate drought stress response | [117] |
Populus trichocarpa | 504 | HiSeq™ 2000, RT-qPCR | Drought- stress response, putative targets and target mimics of miRNAs | [118] |
Pyrus betulifolia | 251 | HiSeq 4000, CNCI, CPC, qRT-PCR | Regulate various metabolic processes | [263] |
Setaria italica | 19 | HiSeq 2000, qRT- PCR | Control drought stress response | [259] |
Solanum lycopersicum | 521 | RT-qPCR | Variety of biological processes via lncRNA-mRNA co-expression | [264] |
Triticum aestivum (Kiziltan, TR39477 and TTD-22 varieties) | 59,110, 57,944 and 40,858 | HiSeq 2000, qRT- PCR | Differential expression under drought stress response in cultivated and wild varieties | [120] |
Zea mays | 1724 | RT-qPCR | Regulatory role in drought response | [102] |
637 | Ribosomal RNA depletion and ultra-deep total RNA sequencing | Regulatory roles in response to N stress | [265] | |
1535 | HiSeq 2500, qRT- PCR | Oxidoreductase activity, water binding and electron carrier activity | [122] | |
1199 | RiboMinus RNA-Seq | Control drought and salt stress | [266] | |
1769 | Strand-specific RNA sequencing, | NATs in drought stress response | [267] |
Plant Name | miRNAs | Target | Target Description | References |
---|---|---|---|---|
Arabidopsis | miR160 | ARF | [273] | |
miR165/166 | HD-ZIPIII, CLP-1, RDD1, ABA signaling | [274,275,276] | ||
miR167 | IAR3 | [277] | ||
miR169 | NFY-A, HAP2 | [278] | ||
miR408 | LAC | [279] | ||
Barley | miR397a | MLOC_54246.3 | LAC-23 | [280] |
miR399 | MLOC_52822.6 | Phosphatase 2 | ||
Novel-m0406-3p | MLOC_70587.1 | PHD finger protein | ||
LOC_50162.1 | Sucrose synthase 1 | |||
MLOC_67419.2 | PBS1, Ser/Thr-protein kinas, | |||
MLOC_67450.11 | D27, beta-carotene isomerase | |||
MLOC_73965.1 | Homocysteine S methyltransferase 3 | |||
Novel-m0598-3p | MLOC_34795.2 | RNA polymerase (25-kDa subunit) | ||
Novel-m0624-3p | MLOC_55820.2 | Pectinesterase | ||
Novel-m0793-3p | MLOC_52822.6 | Phosphatase 2 | ||
Novel-m1587-5p | MLOC_56261.3 | ABC transporter C family member 2-like | ||
Novel-m1738-3p | MLOC_3895.3 | Dro1 (coding for early auxin response protein) | ||
Novel-m1900-5p | MLOC_16998.3 | Glycine-rich RNA-binding protein 10 | ||
Novel-m2311-5p | MLOC_61629.2 | Transcription elongation factor, SPT6 | ||
Novel-m2328-3p | MLOC_6972.2 | DNA crosslink repair 1A protein | ||
Chickpea | miR159 | GA-MYB-like | [281] | |
miR160 | ARF 16 (Seed germination and post germination stages) | |||
miR166 | ATHB-15 (axillary meristem initiation, leaf and vascular development) | |||
miR167 | ABI 5 (Gynoecium and stamen development) | |||
miR169 | NFY-A (plant development and flowering timing; response to different biotic stresses) | |||
miR171 | NSP2 (response to abiotic stresses and floral development) | |||
miR172 | RAP2-7 (flowering time, floral organ identity and cold stress response) | |||
miR393 | AFB2 (susceptibility to virulent bacteria) | |||
miR396 | CP29 (leaf and cotyledon development) | |||
miR408 | Plantacyanin (regulation of DREB and other drought responsive gene) | [282] | ||
Creeping bentgrass | miR319 | TCP | [283] | |
Cucumis sativus | miR159 | T159 | MYB protein 306-like | [284] |
miR167 | T167 | ARF 8-like | ||
miR170 | T170 | GRAS transcription factor | ||
miR172 | T172 | Floral homeotic protein, APETALA 2-like | ||
miR319 | T319 | Transcription factor, MYB75-like | ||
b-miR-n-07 | TB7 | ATPase | ||
b-miR-n10 | TB10 | GRAS transcription factor | ||
b-miR-n24 | TB24 | DELLA protein GAI1-like | ||
miR169 | T169 | NFY-A-1-like | ||
miR395 | T395 | ATP sulfurylase 1 | ||
miR398 | T398 | Superoxide dismutase | ||
csa-miR-n19 | TC19 | Pleiotropic drug resistance protein 2-like | ||
miR168 | T168 | Argonaute 1A-like | ||
miR396 | T396 | Endoribonuclease dicer homolog 1-like | ||
b-miR-n02 | TB2 | Pre-mRNA-processing factor 17-like | ||
b-miR-n20 | TB20 | Dicer-like protein 4-like | ||
Euphrates poplar | miR30a,b | eugene3.00010640 | Electron carrier activity | [285] |
miR71* | eugene3.00010640 | Electron carrier activity | ||
grail3.0008024501 | Electron carrier activity | |||
eugene3.105640001 | Electron carrier activity | |||
fgenesh4_pg.C_scaffold_263000013 | Electron carrier activity | |||
miR77 | eugene3.00002056 | Electron carrier activity | ||
estExt_Genewise1_v1.C_LG_XIV3469 | Electron carrier activity | |||
miR84* | fgenesh4_pm.C_LG_XIII000061 | Electron carrier activity | ||
miR101a | gw1.I.9350.1 | Transcription factor | ||
miR131 | eugene3.00120942 | Electron carrier activity | ||
fgenesh4_pg.C_LG_X001404 | DNA binding | |||
estExt_Genewise1_v1.C_LG_XV2187 | Electron carrier activity | |||
fgenesh4_pg.C_scaffold_9189000001 | Electron carrier activity | |||
fgenesh4_pg.C_LG_II001303 | DNA binding | |||
miR58 | estExt_Genewise1_v1.C_LG_XV2187 | SBP-box Transcription factor | ||
miR67* | gw1.VIII.1137.1 | Function unknown | ||
eugene3.00031501 | Vesicle transport v-SNARE | |||
miR93a | grail3.0010018301 | Function unknown | ||
estExt_Genewise1_v1.C_LG_IV3721 | NADH-ubiquinone oxidoreductase | |||
miR93b | grail3.0010018301 | Function unknown | ||
miR106* | estExt_fgenesh4_pg.C_17020003 | Cytochrome oxidase biogenesis protein | ||
estExt_fgenesh4_pm.C_1230037 | Function unknown | |||
miR115a | gw1.57.264.1 | Function unknown | ||
miR123a | estExt_fgenesh4_pg.C_LG_III1182 | Development and cell-death domain | ||
Maize | miR156c | Putative protein phosphatase 2C | [286] | |
miR159a,b | Serine/threonine protein phosphatase | |||
miR159a-d | GA-MYB transcription factor | |||
miR160a-e | S16, 40S ribosomal protein | |||
miR160b,i | ARR11, response regulator | |||
miR166l,m | Homeodomain–leucine zipper protein | |||
miR167a-i | ARF 12 | |||
miR167c | ARF 17, Putative eIF3e | |||
miR167f,g | ARF 25 | |||
miR167d | Phospholipase D | |||
miR168a,b | Serine/threonine-protein phosphatase | |||
miR168b | Receptor-like protein kinase | |||
miR168a,b | AGO1-1, mitogen-activated protein kinase 13 | |||
miR396a,b | TC250636 | DEAD-box ATP-dependent RNA helicase 3, | ||
TC251979 | Putative early responsive to dehydration stress protein, | |||
TC274109 | GTPase, | |||
TC259098 | Heat shock protein 90, | |||
TC26999 | GA-MYB-binding protein | |||
miR396d,e | Putative serine/threonine protein kinase | |||
miR398b | TC248005 | Pyruvate, orthophosphate dikinase, | ||
TC253981 | Putative protein serine/threonine kinase, | |||
TC270251 | Putative selenium binding protein, | |||
TC270802 | Fructose-bisphosphate aldolase | |||
miR408 | Leucine-rich repeat family protein | |||
miR474b | CF008935 | Putative CBL-interacting protein kinase, | ||
TC263244 | Proline dehydrogenase family protein, | |||
miR474c | CF055555 | Putative transcription factor MYB, | ||
CF632829 | WRKY transcription factor 31 | |||
miR528 | TC250873 | Cu/Zn SOD, | ||
TC274952 | Peroxidase | |||
MiR827 | N/Pi metabolism | |||
miR156a/b,c,d,e,g,h,k,l | AC233751, GRMZM2G061734, GRMZM2G065451 | DNA-binding putative protein | [159] | |
GRMZM2G040785), | Unknown | |||
GRMZM2G307588 | SPL 6 | |||
GRMZM2G414805 | SPL 11 | |||
GRMZM2G460544 | SPL 7 | |||
GRMZM2G067624 | Homoserine kinase | |||
GRMZM2G465165 | Serine/threonine protein kinase | |||
miR159a,b,f,c | GRMZM2G167088 and GRMZM2G416652 | DNA-binding protein | ||
GRMZM2G027100 | Unknown | |||
AC217264 | MYB55 | |||
miR159a,b,f and miR319a,c | GRMZM2G028054 | GA-MYB | ||
miR159a,b,f | GRMZM2G423833, GRMZM2G075064 | DNA-binding protein | ||
miR166d | AC187157 | MPPN domain | ||
GRMZM2G003509 | Protein methyltransferase | |||
GRMZM2G499154 | Metabolic process | |||
miR167a,c | GRMZM2G078274, GRMZM2G475882 | Hormone stimulus | ||
miR395b | GRMZM2G04217 | Secondary active sulfate transmembrane transporter (1) | ||
GRMZM2G149952, GRMZM2G051270 | ATP sulfurylase | |||
miR396f | GRMZM2G178990 | Actin binding protein | ||
miR1432 | GRMZM2G423139 | Calcium-binding allergen Ole e 8 | ||
miR1436 | GRMZM2G125531 | RNA binding protein | ||
miR2097-5p | GRMZM2G151955 | Serine/threonine protein kinase | ||
mir319a-d-3p | GRMZM2G089361TOl | TCP family transcription factor | [287] | |
GRMZM2G145112 T02, GRMZM2G100579 T02 | Putative uncharacterized protein | |||
miR393ac-5p | GRMZM2G135978 Tol, GRMZM5G848945_T02 | Transport inhibitor response 1-like protein | ||
miR396cd | GRMZM2G033612 T02 | Putative uncharacterized protein | ||
GRMZM2G098594_ T06, GRMZM2G099862_ T04, GRMZM2G119359_T01, GRMZM5G893117 T01, GRMZM2G105335_ T02, GRMZM2G067743_T03 | GRF-transcription factor | |||
GRMZM2G029323_T01 | AP2/EREBP transcription factor protein | |||
miR398ab-3p | GRMZM2G023847 Tol, GRMZM2G097851 Tol | Putative uncharacterized protein | ||
GRMZM2G352678 T01 | Chemocyanin | |||
GRMZM5G866053_T01 | Basic blue protein-like | |||
GRMZM2G122302_T01, GRMZM2G082940_T01 | Blue copper protein | |||
miR444ab | GRMZM2G492156_T01, GRMZM2G033093_T01 | MADS-box transcription factor | ||
GRMZM2G005000 T02 | Putative uncharacterized protein | |||
miR168a-3p | GRMZM2G369839 To1 | Putative uncharacterized protein | ||
miR168b-3p | GRMZM2G136486 T02 | Putative uncharacterized protein | ||
miR319a-d-3p | GRMZM2G020805_T01 | TCP family transcription factor | ||
miR390ab-3p | GRMZM2Gl07498_T01 | Putative uncharacterized protein | ||
miR827-3p | GRMZM2G175406_T01 | Putative uncharacterized protein | ||
miR399 | PHO2, UBC24 | Control Pi homeostasis | [288] | |
miR529 | SPB domain transcription factor | |||
miR399 | PHO2, UBC24 | Control Pi homeostasis | ||
miR529 | SPB domain transcription factor | |||
miR156 | SPL | Shoot development and delayed change in vegetative phase | [288,289] | |
miR160 | ARF (root development and auxin signals) | |||
miR166 | HD-ZIPIII (leaf development and polarity) | |||
miR169 | HAP2 | Nitrogen homeostasis and stress response | ||
miR395 | APS, AST | Control ATP Sulfurylase activity | ||
miR171 | SCL | Regulate root development | [289] | |
miR172 | AP2 | Maintain nitrogen remobilization and floral development | ||
miR167 | CCAAT-binding factor, ARF | |||
miR397 | LAC (regulate copper homeostasis and reduces root growth) | |||
miR159 | MYB | Regulate flowering time; leaf shape and size | [288] | |
miR162 | DCL1 | Negative feedback regulatory function | [258] | |
miR164 | NAC1 | Control lateral root development | [258,288] | |
miR168 | AGO1 | Nutrient homeostasis and feedback regulation | [290] | |
miR2275 | gnl|GNOMON|55702013.m | Mitochondrial protein | [254] | |
miR393 | gnl|GNOMON|39086093.m | Protein transport inhibitor response 1-like | ||
miR398 | CSD | Copper homeostasis and oxidative stress | [291] | |
miR156k | ↓ in drought and submergence | [292] | ||
miR159ab | ↑ in drought, ↓ in submergence | |||
miR164e | ↓ in drought and submergence | |||
miR166b,d | ↓ in drought and submergence | |||
miR167c,d,e,g | ↓ in drought and submergence | |||
miR169c,r | ↓ in drought and submergence | |||
miR319b | ↑ in drought, ↓ in submergence | |||
miR396c,d | ↓ in drought and submergence | |||
miR398a,b | ↓ in drought and submergence | |||
miR398b | ↓ in drought and submergence | |||
miR408 | ↓ in drought and submergence | |||
miR408b | ↓ in drought and submergence | |||
miR528ab | ↓ in drought and submergence | |||
miR166c | Constitutive expression | |||
Medicago sativa | miR156 | SBP-like protein | [293] | |
Medicago truncatula | miR164 | NAC domain transcription factor (lateral root development) ↓ | [294] | |
miR169 | CBF (response to drought, cold and salinity, nodule development) ↓ | |||
miR171 | GRAS transcription factors (response to drought, cold and salinity, nodule Morphogenesis and floral development) ↓ | |||
miR396 | GRF (response to drought and salt; cell proliferation) ↓ | |||
miR398 | Cu/Zn CSD1, CSD2 (response to oxidative stress) ↓ | |||
miR399 | PHO2 | ubiquitin conjugating enzyme balance of phosphorus, ↑ | ||
miR2118 | TIR–NBS–LRR domain protein encoding response to drought, cold, salinity and ABA, ↑ | |||
miR1510a | PDC isozyme 1, concanavalin A-like lectin/glucanase 3. F-box protein, ↓ | |||
miR2089 | NB–ARC domain protein, ↑ | |||
miR2111a-s,u-v | Calcineurin-like phosphoesterase, membrane protein SAK, ↑ | |||
miR5274b | DNA-damage-repair, toleration protein, ↑ | |||
miR5554a- c | Polynucleotidyl transferase, ribonuclease H fold, ↓ | |||
miR5558 | Initiation factor eIF-4 gamma, homeodomain-related POX, ↑ | |||
Rice | 66 miRNAs | Response to drought stress | [119] | |
miR167, miR9774, miR398, miR162, miR319, miR156, miR408, miR166, miR531, miR827 and miR8175 | ↓ expression profiling in response to drought stress | [294] | ||
miR6300, miR160, miR1861, miR440, miR9773, miR3982, miR171 and miR1876 | ↑ expression profiling in response to drought stress | |||
67 novel drought responsive miRNAs | 27 novel miRNAs ↓ and 40 novel miRNAs ↑ in response to drought stress | [295] | ||
Osa-miR159f, Osa-miR1871, Osa-miR398b, Osa-miR408-3p, Osa-miR2878-5p, Osa-miR528-5p and Osa-miR397a | ↑ in the flag-leaves of tolerant cultivar (N22 and Vandana, while ↓ in sensitive cultivar (PB1 and IR64) during drought | [296] | ||
miR398 | CSD | Regulate copper homeostasis and oxidative stress | [292] | |
Sugarcane | MiR160, miR399 and miR528 | ↑ in tolerant cultivar (RB867515) | [297] | |
miR160, miR394, miR399 and miR1432 | ↑ in sensitive cultivar (RB855536) | |||
miR166, miR169, miR171, MiR172, miR393, miR396, miR399 and miR1432 | ↓ in tolerant cultivar (RB867515) | |||
miR166, miR171, miR396 | ↓ in sensitive cultivar (RB855536) | |||
Sunflower | miR399a-2 | HannXRQ_chr02g0057111 | Environment adaptation; leaf ↑; root ↑ | [251] |
Novel-mir40 4 | HannXRQ_chr03g0090941 | DNA repair protein XRCC; root ↑ | ||
Novel-mir3, Novel-mir42 | HannXRQ_chr04g0098561 | Putative toll/interleukin-1 receptor; root ↑ | ||
miR396b | HannXRQ_chr04g0115781 | Serine/threonine protein kinase; leaf ↑ | ||
miR156a-5p,f,k,q, 157a-5p | HannXRQ_chr05g0138971 | SBP transcription factor; leaf ↑ | ||
Novel-mir3 | HannXRQ_chr05g0149501 | P-loop containing nucleoside triphosphate hydrolase; leaf ↓ | ||
miR396a,b-5p | HannXRQ_chr05g0150421 | Glutamyl tRNA reductase and chlorophyll metabolism; leaf ↓ | ||
miR156h | HannXRQ_chr07g0196531 | Leaf ↓ | ||
miR396f-1 | HannXRQ_chr08g0211484 | Serine/threonine dual specificity protein kinase; root ↑ | ||
miR394a-3p-1 | HannXRQ_chr08g0216701 | Related to Zn ion transport; leaf ↑ | ||
Novel-mir36 | HannXRQ_chr08g0219981 | Putative plant disease resistance response protein; root ↓ | ||
Novel-mir42 | HannXRQ_chr09g0239281 | Putative toll/interleukin-1 receptor homology (TIR) domain; root ↑ | ||
Novel-mir3 | HannXRQ_chr09g0239531 | P-loop containing nucleoside triphosphate hydrolase; root ↑ | ||
Novel-mir55 | HannXRQ_chr09g0252001 | C-terminal LisH motif-containing protein, Leaf ↑; root ↑ | ||
Novel-mir42 | HannXRQ_chr13g0396521 | P-loop containing nucleoside triphosphate hydrolase; root ↑ | ||
Novel-mir3 | HannXRQ_chr13g0396531 | Putative toll/interleukin-1 receptor; leaf ↓ | ||
Novel-mir65 | HannXRQ_chr14g0435381 | Root ↑ | ||
Novel-mir66 | HannXRQ_chr14g0435571 | Auxin-induced protein, leaf ↑ | ||
MiR172a-2 | HannXRQ_chr15g0491641 | Leaf ↑; root ↑ | ||
MiR156a-2 | HannXRQ_chr17g0534011 | (S)-urea glycine amidohydrolase; leaf ↑ | ||
Novel-mir17 | HannXRQ_chr17g0569261 | Probable response regulator 11; root ↓ | ||
Triticum aestivum | miR156 | SPL; leaf ↑; root ↑ | [298] | |
miR159 | MYB transcription factor, leaf ↑; root ↓ | |||
miR160 | ARF, leaf ↑; root ↑ | |||
miR162 | GTPase activating protein-like; leaf ↑ | |||
miR164 | NAC domain-containing protein; leaf ↑; root ↑ | |||
miR169 | CCAAT-box-transcription factor; leaf ↓; root ↑ | |||
miR172 | APETALA2 transcription factor; leaf ↓; root ↓ | |||
miR319 | MYB transcription factor; leaf ↑; root ↓ | |||
miR396 | Heat shock protein; leaf ↓; root ↓ | |||
miR398 | Cu/Zn superoxide dismutase; leaf ↑; root ↓ | |||
miR482 | TPGR; leaf ↑; root ↑ | |||
miR528 | Glyceraldehyde-3-phosphate dehydrogenase; leaf ↑; root ↓ | |||
miR838 | Small heat shock protein (Mds1); leaf ↓ | |||
miR1120 | Glyceraldehyde-3-phosphate dehydrogenase; leaf ↑ | |||
miR1169 | Small GTP-binding protein; root ↑ | |||
miR1436 | Glutathione S-transferase; root ↑ | |||
miR1450 | Manganese superoxide dismutase; leaf ↓ | |||
miR2102 | Calmodulin-binding family protein; root ↑ | |||
miR4393 | ARF; leaf ↑; root ↓ | |||
miR4993 | SKP1/ASK1-like protein; root ↑ | |||
miR5048 | RPG1, serine/threonine protein kinase; root ↓ | |||
miR5049 | Wpk4 protein kinase, leaf ↑; root ↑ | |||
miR5059 | Heat shock protein; root ↑ | |||
miR5075 | Serine/threonine protein kinase 3; root ↑ | |||
miR5083 | Hydroxymethylglutaryl-CoA synthase; leaf ↑ | |||
miR5174 | NBS–LRR genes, leaf ↑; root ↑ | |||
miR5175 | Methylene-tetrahydrofolate reductase; leaf ↑ | |||
miR5205 | Malate dehydrogenase, CBS domain-containing protein; leaf ↑ | |||
miR5568 | Pathogenesis-related protein, leaf ↑; root ↓ | |||
miR6108 | Glycosyltransferase; leaf ↑ | |||
37 miRNAs including 5 novel miRNAs | 27 ↑, 10 ↓ | [34] | ||
Zanthoxylum bungeanum | miR396a-5p | Superoxide dismutase [Mn] 1, mitochondrial | [14] | |
miR834 | Superoxide dismutase [Fe], chloroplastic-like isoform X2 | |||
miR167a-3p | Peroxiredoxin-2E, chloroplastic (POD) | |||
miR169b-3p | Catalase isozyme 1(CAT) | |||
miR447a-3p | L-ascorbate peroxidase 3 | |||
miR773b-3p | Phospholipid hydroperoxide glutathione peroxidase 1, chloroplastic | |||
miR397b | Delta-1-pyrroline-5-carboxylate synthase, key enzyme for the synthesis of proline | |||
miR397b | JAR1 | Jasmonic acid-amido synthetase (participate in the synthesis of jasmonic acid) | ||
miR859 | ABSCISIC ACID–INSENSITIVE 5-like protein 5, (regulate a variety of ABA responses, such as stomatal closure, plasma membrane permeability and water permeability) | |||
miR5632-5p | Mitogen-activated protein kinase 1 | |||
miR1888a | Protein disulfide-isomerase 5-2 isoform X1 | |||
miR5638a | Respiratory burst oxidase homolog protein C (Citrus sinensis) | |||
miR398a-3p | Probable nucleoredoxin 1 | |||
miR3434-3p | Translationally controlled tumor protein homolog; involved in the regulation of abscisic acid–mediated and calcium-mediated stomatal closure |
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Gelaw, T.A.; Sanan-Mishra, N. Non-Coding RNAs in Response to Drought Stress. Int. J. Mol. Sci. 2021, 22, 12519. https://doi.org/10.3390/ijms222212519
Gelaw TA, Sanan-Mishra N. Non-Coding RNAs in Response to Drought Stress. International Journal of Molecular Sciences. 2021; 22(22):12519. https://doi.org/10.3390/ijms222212519
Chicago/Turabian StyleGelaw, Temesgen Assefa, and Neeti Sanan-Mishra. 2021. "Non-Coding RNAs in Response to Drought Stress" International Journal of Molecular Sciences 22, no. 22: 12519. https://doi.org/10.3390/ijms222212519