Design, Synthesis and Antiviral Evaluation of Pyrido[1,2-c]pyrimidin-1-one Derivatives Against Porcine Epidemic Diarrhea Virus (PEDV)
Abstract
1. Introduction
2. Results and Discussion
2.1. Chemical Synthesis and NMR Characterization
2.1.1. Chemical Synthesis
2.1.2. NMR Characterization
2.2. Analysis of Anti-PEDV Activity and Structure–Activity Relationship
2.2.1. Anti-PEDV Activity
2.2.2. Analysis of Structure–Activity Relationship (SAR)
2.3. Antiviral Activity, Cell Cytotoxicity and Metabolic Stability Assays of the Preferred Compounds
2.3.1. Antiviral Activity and Cell Cytotoxicity of the Preferred Compounds
2.3.2. Metabolic Stability Assays of the Preferred Compounds
3. Materials and Methods
3.1. General Experimental Information
3.2. Synthesis of Compounds
3.2.1. Synthesis of Ethyl 3-(4-(Benzyloxy)phenyl)-1-oxo-6-(trimethylsilyl)-1H-pyrido[1,2-c]pyrimidine-4-carboxylate (J1)
- Synthesis of ethyl 4-(4-(benzyloxy)phenyl)-6-methyl-2-oxo-1,2,3,4-tetrahydropyrimidine-5-carboxylate (J1-1).
- Synthesis of ethyl 3-acetyl-4-(4-(benzyloxy)phenyl)-6-methyl-2-oxo-1,2,3,4-tetrahydropyrimidine-5-carboxylate (J1-2).
- Synthesis of ethyl 3-acetyl-4-(4-(benzyloxy)phenyl)-6-methyl-2-oxo-1-(3-(trimethylsilyl)prop-2-yn-1-yl)-1,2,3,4-tetrahydropyrimidine-5-carboxylate (J1-3).
- Synthesis of ethyl 4-(4-(benzyloxy)phenyl)-6-methyl-2-oxo-1-(3-(trimethylsilyl)prop-2-yn-1-yl)-1,2,3,4-tetrahydropyrimidine-5-carboxylate (J1-4).
- Synthesis of ethyl 4-(4-(benzyloxy)phenyl)-6-methyl-2-oxo-1-(3-(trimethylsilyl)prop-2-yn-1-yl)-1,2-dihydropyrimidine-5-carboxylate (J1-5).
- Synthesis of ethyl 3-(4-(benzyloxy)phenyl)-1-oxo-6-(trimethylsilyl)-1H-pyrido[1,2-c]pyrimidine-4-carboxylate (J1).
3.2.2. Synthesis of Ethyl 3-(4-Bromophenyl)-1-oxo-6-(trimethylsilyl)-1H-pyrido[1,2-c]pyrimidine-4-carboxylate (J2)
- Synthesis of ethyl 4-(4-bromophenyl)-6-methyl-2-oxo-1,2,3,4-tetrahydropyrimidine-5-carboxylate (J2-1).
- Synthesis of ethyl 3-acetyl-4-(4-bromophenyl)-6-methyl-2-oxo-1,2,3,4-tetrahydropyrimidine-5-carboxylate (J2-2).
- Synthesis of ethyl 3-acetyl-4-(4-bromophenyl)-6-methyl-2-oxo-1-(3-(trimethylsilyl)prop-2-yn-1-yl)-1,2,3,4-tetrahydropyrimidine-5-carboxylate (J2-3).
- Synthesis of ethyl 4-(4-bromophenyl)-6-methyl-2-oxo-1-(3-(trimethylsilyl)prop-2-yn-1-yl)-1,2,3,4-tetrahydropyrimidine-5-carboxylate (J2-4).
- Synthesis of ethyl 4-(4-bromophenyl)-6-methyl-2-oxo-1-(3-(trimethylsilyl)prop-2-yn-1-yl)-1,2-dihydropyrimidine-5-carboxylate (J2-5).
- Synthesis of ethyl 3-(4-bromophenyl)-1-oxo-6-(trimethylsilyl)-1H-pyrido[1,2-c]pyrimidine-4-carboxylate (J2).
3.2.3. Synthesis of 4-Acetyl-3-(4-phenoxyphenyl)-6-(trimethylsilyl)-1H-pyrido[1,2-c]pyrimidin-1-one (J3)
- Synthesis of 5-acetyl-6-methyl-4-(4-phenoxyphenyl)-3,4-dihydropyrimidin-2(1H)-one (J3-1).
- Synthesis of 1,1’-(4-methyl-2-oxo-6-(4-phenoxyphenyl)-3,6-dihydropyrimidine-1,5(2H)-diyl)bis(ethan-1-one) (J3-2).
- Synthesis of 1,1’-(4-methyl-2-oxo-6-(4-phenoxyphenyl)-3-(3-(trimethylsilyl)prop-2-yn-1-yl)-3,6-dihydropyrimidine-1,5(2H)-diyl)bis(ethan-1-one) (J3-3).
- Synthesis of 5-acetyl-6-methyl-4-(4-phenoxyphenyl)-1-(3-(trimethylsilyl)prop-2-yn-1-yl)-3,4-dihydropyrimidin-2(1H)-one (J3-4).
- Synthesis of 5-acetyl-6-methyl-4-(4-phenoxyphenyl)-1-(3-(trimethylsilyl)prop-2-yn-1-yl)pyrimidin-2(1H)-one (J3-5).
- Synthesis of 4-acetyl-3-(4-phenoxyphenyl)-6-(trimethylsilyl)-1H-pyrido[1,2-c]pyrimidin-1-one (J3).
3.2.4. Synthesis of Ethyl 1-Oxo-3-(4-phenoxyphenyl)-6-phenyl-1H-pyrido[1,2-c]pyrimidine-4-carboxylate (J4)
- Synthesis of ethyl 6-methyl-2-oxo-4-(4-phenoxyphenyl)-1,2,3,4-tetrahydropyrimidine-5-carboxylate (J4-1).
- Synthesis of ethyl 3-acetyl-6-methyl-2-oxo-4-(4-phenoxyphenyl)-1,2,3,4-tetrahydropyrimidine-5-carboxylate (J4-2).
- Synthesis of ethyl 3-acetyl-6-methyl-2-oxo-4-(4-phenoxyphenyl)-1-(3-phenylprop-2-yn-1-yl)-1,2,3,4-tetrahydropyrimidine-5-carboxylate (J4-3).
- Synthesis of ethyl 6-methyl-2-oxo-4-(4-phenoxyphenyl)-1-(3-phenylprop-2-yn-1-yl)-1,2,3,4-tetrahydropyrimidine-5-carboxylate (J4-4).
- Synthesis of ethyl 6-methyl-2-oxo-4-(4-phenoxyphenyl)-1-(3-phenylprop-2-yn-1-yl)-1,2-dihydropyrimidine-5-carboxylate (J4-5).
- Synthesis of ethyl 1-oxo-3-(4-phenoxyphenyl)-6-phenyl-1H-pyrido[1,2-c]pyrimidine-4-carboxylate (J4).
3.2.5. Synthesis of Ethyl 6-Methyl-1-oxo-3-(4-phenoxyphenyl)-1H-pyrido[1,2-c]pyrimidine-4-carboxylate (J5)
- Synthesis of ethyl 3-acetyl-1-(but-2-yn-1-yl)-6-methyl-2-oxo-4-(4-phenoxyphenyl)-1,2,3,4-tetrahydropyrimidine-5-carboxylate (J5-1).
- Synthesis of ethyl 1-(but-2-yn-1-yl)-6-methyl-2-oxo-4-(4-phenoxyphenyl)-1,2,3,4-tetrahydropyrimidine-5-carboxylate (J5-2).
- Synthesis of ethyl 1-(but-2-yn-1-yl)-6-methyl-2-oxo-4-(4-phenoxyphenyl)-1,2-dihydropyrimidine-5-carboxylate (J5-3).
- Synthesis of ethyl 6-methyl-1-oxo-3-(4-phenoxyphenyl)-1H-pyrido[1,2-c]pyrimidine-4-carboxylate (J5).
3.2.6. Synthesis of Ethyl 3-(4-(Benzyloxy)phenyl)-1-oxo-1H-pyrido[1,2-c]pyrimidine-4-carboxylate (K1)
3.2.7. Synthesis of Ethyl 3-(4-Bromophenyl)-1-oxo-1H-pyrido[1,2-c]pyrimidine-4-carboxylate (K2)
3.2.8. Synthesis of 4-Acetyl-3-(4-phenoxyphenyl)-1H-pyrido[1,2-c]pyrimidin-1-one (K3)
3.2.9. Synthesis of Ethyl 3-(4-Hydroxyphenyl)-1-oxo-1H-pyrido[1,2-c]pyrimidine-4-carboxylate (M0)
3.2.10. Synthesis of Ethyl 3-(4-(Cyclopropylmethoxy)phenyl)-1-oxo-1H-pyrido[1,2-c]pyrimidine-4-carboxylate (M1)
3.2.11. Synthesis of Ethyl 3-(4-(But-2-yn-1-yloxy)phenyl)-1-oxo-1H-pyrido[1,2-c]pyrimidine-4-carboxylate (M2)
3.2.12. Synthesis of Ethyl 3-(4-(Cyanomethoxy)phenyl)-1-oxo-1H-pyrido[1,2-c]pyrimidine-4-carboxylate (M3)
3.2.13. Ethyl 3-(4-(Oxazol-2-yloxy)phenyl)-1-oxo-1H-pyrido[1,2-c]pyrimidine-4-carboxylate (M4)
3.2.14. Ethyl 1-Oxo-3-(4-(thiazol-2-yloxy)phenyl)-1H-pyrido[1,2-c]pyrimidine-4-carboxylate (M5)
3.2.15. Ethyl 1-Oxo-3-(4-((4-phenylthiazol-2-yl)oxy)phenyl)-1H-pyrido[1,2-c]pyrimidine-4-carboxylate (M6)
3.2.16. Ethyl 3-(4-((3-Chlorobenzyl)oxy)phenyl)-1-oxo-1H-pyrido[1,2-c]pyrimidine-4-carboxylate (M7)
3.2.17. Ethyl 3-(4-((4-Chlorobenzyl)oxy)phenyl)-1-oxo-1H-pyrido[1,2-c]pyrimidine-4-carboxylate (M8)
3.2.18. Ethyl 3-(4-((2-Chlorobenzyl)oxy)phenyl)-1-oxo-1H-pyrido[1,2-c]pyrimidine-4-carboxylate (M9)
3.2.19. Ethyl 1-Oxo-3-(4-((2-(trifluoromethyl)benzyl)oxy)phenyl)-1H-pyrido[1,2-c]pyrimidine-4-carboxylate (M10)
3.2.20. Ethyl 3-(4-((4-Methoxybenzyl)oxy)phenyl)-1-oxo-1H-pyrido[1,2-c]pyrimidine-4-carboxylate (M11)
3.2.21. Ethyl 1-Oxo-3-(4-(pyridin-3-ylmethoxy)phenyl)-1H-pyrido[1,2-c]pyrimidine-4-carboxylate (M12)
3.2.22. Ethyl 3-(4-(Cyclohexyloxy)phenyl)-1-oxo-1H-pyrido[1,2-c]pyrimidine-4-carboxylate (M13)
3.2.23. Ethyl 3-(4-(Cyclopentyloxy)phenyl)-1-oxo-1H-pyrido[1,2-c]pyrimidine-4-carboxylate (M14)
3.2.24. Ethyl 3-(4-((2,6-Dimethylphenyl)amino)phenyl)-1-oxo-6-(trimethylsilyl)-1H-pyrido[1,2-c]pyrimidine-4-carboxylate (N1)
3.2.25. Ethyl 3-(4-((2,6-Dichlorophenyl)amino)phenyl)-1-oxo-6-(trimethylsilyl)-1H-pyrido[1,2-c]pyrimidine-4-carboxylate (N2)
3.2.26. Ethyl 3-(4-((2-Methoxy-4-methylphenyl)amino)phenyl)-1-oxo-6-(trimethylsilyl)-1H-pyrido[1,2-c]pyrimidine-4-carboxylate (N3)
3.2.27. Ethyl 3-(4-((2-Chloro-4-(trifluoromethoxy)phenyl)amino)phenyl)-1-oxo-6-(Trimethylsilyl)-1H-pyrido[1,2-c]pyrimidine-4-carboxylate (N4)
3.2.28. Ethyl 1-Oxo-3-(4-(phenylamino)phenyl)-1H-pyrido[1,2-c]pyrimidine-4-carboxylate (O1)
3.2.29. Ethyl 3-(4-((2-Chloro-4-(trifluoromethoxy)phenyl)amino)phenyl)-1-oxo-1H-pyrido[1,2-c]pyrimidine-4-carboxylate (O2)
3.2.30. Ethyl 3-(4-((2-Methoxy-4-methylphenyl)amino)phenyl)-1-oxo-1H-pyrido[1,2-c]pyrimidine-4-carboxylate (O3)
3.2.31. Ethyl 3-(4-((2,6-Dichlorophenyl)amino)phenyl)-1-oxo-1H-pyrido[1,2-c]pyrimidine-4-carboxylate (O4)
3.2.32. Ethyl 3-(4-((2,6-Dimethylphenyl)amino)phenyl)-1-oxo-1H-pyrido[1,2-c]pyrimidine-4-carboxylate (O5)
3.2.33. Ethyl 3-(4-(Benzylamino)phenyl)-1-oxo-1H-pyrido[1,2-c]pyrimidine-4-carboxylate (O6)
3.2.34. Ethyl 3-(4-((4-Chlorobenzyl)amino)phenyl)-1-oxo-1H-pyrido[1,2-c]pyrimidine-4-carboxylate (O7)
3.2.35. N-(((1s,3s)-Adamantan-1-yl)methyl)-3-(4-bromophenyl)-1-oxo-1H-pyrido[1,2-c]pyrimidine-4-carboxamide (P1)
3.2.36. 3-(4-Bromophenyl)-N-cyclohexyl-1-oxo-1H-pyrido[1,2-c]pyrimidine-4-carboxamide (P2)
3.3. Biological Experimental Methods
3.3.1. Cell and Virus
3.3.2. In Vitro Anti-PEDV Activity Evaluation
3.3.3. In Vitro Cytotoxicity Assay
3.4. Microsomal Stability Assay
3.4.1. Preparation of Solutions
3.4.2. Microsome Incubations
3.4.3. Sample Analysis
4. Conclusions
Supplementary Materials
Author Contributions
Funding
Institutional Review Board Statement
Informed Consent Statement
Data Availability Statement
Conflicts of Interest
Abbreviations
| PEDV | Porcine Epidemic Diarrhea Virus |
| PPO | Pyrido[1,2-c]pyrimidin-1-one |
| SAR | Structure–Activity Relationships |
| PED | Porcine Epidemic Diarrhea |
| EC50 | Half-maximal Inhibitory Concentration |
| SI | Selectivity Index |
| Mpro | Main Protease |
| 3CLpro | 3C-like Protease |
| FIPV | Feline Infectious Peritonitis Virus |
| TMS | Trimethylsilyl |
| Ph | Phenyl |
| Me | Methyl |
| OEt | Ethoxy |
| THF | Tetrahydrofuran |
| TBAF | Tetra-n-butylammonium Fluoride |
| TFA | Trifluoroacetic Acid |
| DMF | N,N-Dimethylformamide |
| DIAD | Diisopropyl Azodicarboxylate |
| PPh3 | Triphenylphosphine |
| BPO | Benzoyl Peroxide |
| HAuCl4·3H2O | Chloroauric Acid Trihydrate |
| Cs2CO3 | Cesium Carbonate |
| Pd2(dba)3 | Tris(dibenzylideneacetone)dipalladium(0) |
| DCE | 1,2-Dichloroethane |
| Ac2O | Acetic Anhydride |
| Clint | Intrinsic Clearance |
| Eh | Hepatic Extraction Ratio |
| Vero | African green monkey kidney cells |
| DMEM | Dulbecco’s Modified Eagle Medium |
| FBS | Fetal Bovine Serum |
| PBS | Phosphate Buffered Saline |
| RT-qPCR | Real-time Quantitative Polymerase Chain Reaction |
| RNA | Ribonucleic Acid |
| cDNA | Complementary DNA |
| NMR | Nuclear Magnetic Resonance |
| HRMS | High-Resolution Mass Spectrometry |
| ESI | Electrospray Ionization |
| HPLC | High-Performance Liquid Chromatography |
| TLC | Thin-Layer Chromatography |
| MOI | Multiplicity of Infection |
| SD | Standard Deviation |
| NADPH | Reduced Nicotinamide Adenine Dinucleotide Phosphate |
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| Compd. | L | R1 | R2 | R3 | Inhibition Rate (%) a | Viral Yield Reduction b |
|---|---|---|---|---|---|---|
| J1 | O | ![]() | OEt | TMS | 99.99 ± 0.01 | 4.49 ± 0.74 |
| J2 | Br | / | OEt | TMS | 78.12 ± 10.18 | 0.70 ± 0.21 |
| J3 | O | ![]() | Me | TMS | 99.99 ± 0.00 | 4.09 ± 0.13 |
| J4 | O | ![]() | OEt | Ph | 100.00 ± 0.00 | 4.64 ± 0.29 |
| J5 | O | ![]() | OEt | Me | 93.47 ± 1.64 | 1.20 ± 0.10 |
| K1 | O | ![]() | OEt | H | 86.86 ± 5.45 | 0.92 ± 0.21 |
| K2 | Br | / | OEt | H | 35.96 ± 9.37 | 0.20 ± 0.06 |
| K3 | O | ![]() | Me | H | 98.46 ± 0.17 | 1.81 ± 0.04 |
| M0 | O | H | OEt | H | 38.90 ± 3.49 | 0.22 ± 0.07 |
| M1 | O | ![]() | OEt | H | 40.14 ± 9.44 | 0.23 ± 0.07 |
| M2 | O | ![]() | OEt | H | 45.91 ± 7.23 | 0.27 ± 0.06 |
| M3 | O | ![]() | OEt | H | 4.85 ± 1.38 | 0.02 ± 0.01 |
| M4 | O | ![]() | OEt | H | 51.47 ±17.00 | 0.34 ± 0.16 |
| M5 | O | ![]() | OEt | H | 96.19 ± 2.19 | 1.48 ± 0.27 |
| M6 | O | ![]() | OEt | H | 99.86 ± 0.03 | 2.85 ± 0.09 |
| M7 | O | ![]() | OEt | H | 99.26 ± 0.11 | 2.14 ± 0.06 |
| M8 | O | ![]() | OEt | H | 99.21 ± 0.23 | 2.12 ± 0.13 |
| M9 | O | ![]() | OEt | H | 99.61 ± 0.04 | 2.41 ± 0.04 |
| M10 | O | ![]() | OEt | H | 99.86 ± 0.04 | 2.87 ± 0.14 |
| M11 | O | ![]() | OEt | H | 99.53 ± 0.05 | 2.33 ± 0.05 |
| M12 | O | ![]() | OEt | H | 97.86 ± 1.93 | 1.92 ± 0.56 |
| M13 | O | ![]() | OEt | H | 92.61 ± 2.22 | 1.15 ± 0.13 |
| M14 | O | ![]() | OEt | H | 68.51 ± 13.12 | 0.53 ± 0.19 |
| N1 | NH | ![]() | OEt | TMS | 99.99 ± 0.01 | 3.88 ± 0.01 |
| N2 | NH | ![]() | OEt | TMS | 100.00 ± 0.00 | 4.48 ± 0.47 |
| N3 | NH | ![]() | OEt | TMS | 97.31 ± 0.85 | 1.59 ± 0.16 |
| N4 | NH | ![]() | OEt | TMS | 99.98 ± 0.01 | 3.78 ± 0.14 |
| O1 | NH | ![]() | OEt | H | 90.80 ± 2.08 | 1.05 ± 0.09 |
| O2 | NH | ![]() | OEt | H | 99.78 ± 0.08 | 2.68 ± 0.20 |
| O3 | NH | ![]() | OEt | H | 88.43 ± 1.72 | 0.94 ± 0.07 |
| O4 | NH | ![]() | OEt | H | 84.79 ± 6.82 | 0.86 ± 0.21 |
| O5 | NH | ![]() | OEt | H | 80.59 ± 4.97 | 0.72 ± 0.11 |
| O6 | NH | ![]() | OEt | H | 27.44 ± 10.94 | 0.14 ± 0.06 |
| O7 | NH | ![]() | OEt | H | 96.02 ± 3.29 | 1.60 ± 0.49 |
| P1 | Br | / | ![]() | H | 98.79 ± 0.89 | 2.11 ± 0.49 |
| P2 | Br | / | ![]() | H | 43.08 ± 6.28 | 0.25 ± 0.05 |
| Lycorine c | ![]() | 99.94 ± 0.04 | 3.69 ± 0.28 | |||
| Compd. | Structure | EC50 (μM) a | CC50 (μM) a | SI b |
|---|---|---|---|---|
| J1 | ![]() | 0.70 ± 0.06 | 10.80 ± 0.81 | 15.43 |
| J3 | ![]() | 1.37 ± 0.07 | 18.28 ± 1.41 | 13.64 |
| J4 | ![]() | 1.77 ± 0.20 | 60.47 ± 9.90 | 34.16 |
| N1 | ![]() | 0.32 ± 0.02 | 14.01 ± 1.17 | 43.78 |
| N2 | ![]() | 0.37 ± 0.02 | 15.87 ± 2.14 | 42.89 |
| N4 | ![]() | 0.79 ± 0.08 | 18.16 ± 2.59 | 23.54 |
| Compd. | Species | T1/2 (min) | Clint (mL/min/mg) | Eh (%) | Clearance Classified |
|---|---|---|---|---|---|
| J1 | Human | 12.7 | 0.273 | 93.9 | High |
| Mouse | 8.58 | 0.404 | 94.7 | High | |
| J3 | Human | 30.4 | 0.114 | 86.6 | High |
| Mouse | 72.7 | 0.0477 | 67.7 | Medium | |
| J4 | Human | 71.9 | 0.0482 | 73.1 | High |
| Mouse | 92.0 | 0.0377 | 62.4 | Medium | |
| N1 | Human | 13.7 | 0.252 | 93.4 | High |
| Mouse | 18.0 | 0.192 | 89.4 | High | |
| N2 | Human | 50.8 | 0.0682 | 79.4 | High |
| Mouse | 39.0 | 0.0888 | 79.6 | High |
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Xu, W.; Ni, W.; Zhou, Z.; Ju, Z.; Liu, S.; Pan, S.; Jiang, X. Design, Synthesis and Antiviral Evaluation of Pyrido[1,2-c]pyrimidin-1-one Derivatives Against Porcine Epidemic Diarrhea Virus (PEDV). Molecules 2026, 31, 1480. https://doi.org/10.3390/molecules31091480
Xu W, Ni W, Zhou Z, Ju Z, Liu S, Pan S, Jiang X. Design, Synthesis and Antiviral Evaluation of Pyrido[1,2-c]pyrimidin-1-one Derivatives Against Porcine Epidemic Diarrhea Virus (PEDV). Molecules. 2026; 31(9):1480. https://doi.org/10.3390/molecules31091480
Chicago/Turabian StyleXu, Wenlong, Wu Ni, Ziyan Zhou, Zhenhui Ju, Sisi Liu, Shixiang Pan, and Xiangrui Jiang. 2026. "Design, Synthesis and Antiviral Evaluation of Pyrido[1,2-c]pyrimidin-1-one Derivatives Against Porcine Epidemic Diarrhea Virus (PEDV)" Molecules 31, no. 9: 1480. https://doi.org/10.3390/molecules31091480
APA StyleXu, W., Ni, W., Zhou, Z., Ju, Z., Liu, S., Pan, S., & Jiang, X. (2026). Design, Synthesis and Antiviral Evaluation of Pyrido[1,2-c]pyrimidin-1-one Derivatives Against Porcine Epidemic Diarrhea Virus (PEDV). Molecules, 31(9), 1480. https://doi.org/10.3390/molecules31091480









































