Ferrocenoylation of Uracil Derivatives: Study of Reaction Regioselectivity and Biological Activity
Abstract
1. Introduction
2. Results and Discussion
2.1. Synthesis: Model Reaction, Regioselectivity, and DFT
2.2. Regioselectivity of the C5 Coupling Reaction of Uracil Derivatives
2.3. Biological Evaluation of Ferrocene–Pyrimidine Conjugates
2.3.1. Acellular ROS Activity Testing
2.3.2. Testing the Immunostimulatory Activity In Vivo
3. Materials and Methods
3.1. General
3.2. Materials
3.3. Preparation of Substrates
3.4. Optimisation of the Reaction Conditions for the N-Ferrocenoylation of Uracil for Table 1, Tables S1 and S2
3.5. General Procedure for the Preparation of N1- or/and N1/N3-Ferrocenoylated C5 Derivatives of Pyrimidine Bases for Table 2
3.6. Characterisation of Products
3.7. Density Functional Theory (DFT) Calculations
3.8. In Vivo Evaluation of Immunostimulatory Activity
4. Conclusions
Supplementary Materials
Author Contributions
Funding
Institutional Review Board Statement
Informed Consent Statement
Data Availability Statement
Acknowledgments
Conflicts of Interest
References
- Heinze, K.; Lang, H. Ferrocene-Beauty and Function. Organometallics 2013, 32, 5623–5625. [Google Scholar] [CrossRef]
- Singh, A.; Lumb, I.; Mehra, V.; Kumar, V. Ferrocene-appended pharmacophores: An exciting approach for modulating the biological potential of organic scaffolds. Dalton Trans. 2019, 48, 2840–2860. [Google Scholar] [CrossRef] [PubMed]
- van Staveren, D.R.; Metzler-Nolte, N. Bioorganometallic Chemistry of Ferrocene. Chem. Rev. 2004, 104, 5931–5985. [Google Scholar] [CrossRef] [PubMed]
- Sharma, B.; Kumar, V. Has Ferrocene Really Delivered Its Role in Accentuating the Bioactivity of Organic Scaffolds? J. Med. Chem. 2021, 64, 16865–16921. [Google Scholar] [CrossRef]
- Plażuk, D.; Vessières, A.; Hillard, E.A.; Buriez, O.; Labbé, E.; Pigeon, P.; Jaouen, G. A 3-Ferrocenophane Polyphenol Showing a Remarkable Antiproliferative Activity on Breast and Prostate Cancer Cell Lines. J. Med. Chem. 2009, 52, 4964–4967. [Google Scholar] [CrossRef] [PubMed]
- Gasser, G.; Metzler-Nolte, N. The potential of organometallic complexes in medicinal chemistry. Curr. Opin. Chem. Biol. 2012, 16, 84–91. [Google Scholar] [CrossRef]
- Liu, Z.-Q. Is it still worth renewing nucleoside anticancer drugs nowadays? Eur. J. Med. Chem. 2024, 264, 115987. [Google Scholar] [CrossRef]
- Tomar, V.; Kumar, P.; Sharma, D.; Joshi, R.K.; Nemiwal, M. Anticancer potential of ferrocene-containing derivatives: Current and future prospective. J. Mol. Struct. 2025, 1319, 139589. [Google Scholar] [CrossRef]
- Sharma, A.; Rana, R.; Kumar, N.; Jyoti; Khanna, A.; Gulati, H.K.; Pooja; Kaur, S.; Singh, J.V.; Singh Bedi, P.M. Remarkable contribution of ferrocene as anticancer agent: An updated review (2020–2024). Inorg. Chem. Commun. 2025, 175, 114155. [Google Scholar] [CrossRef]
- Ornelas, C.; Astruc, D. Ferrocene-Based Drugs, Delivery Nanomaterials and Fenton Mechanism: State of the Art, Recent Developments and Prospects. Pharmaceutics 2023, 15, 2044. [Google Scholar] [CrossRef]
- Astruc, D. Why is ferrocene so exceptional? Eur. J. Inorg. Chem. 2017, 2017, 6–29. [Google Scholar] [CrossRef]
- Neuse, E.W. Macromolecular ferrocene compounds as cancer drug models. J. Inorg. Organomet. Polym. Mater. 2005, 15, 3–31. [Google Scholar] [CrossRef]
- Soltani Rad, M.N.; Behrouz, S.; Asrari, Z.; Khalafi-Nezhad, A. A simple and regioselective one-pot procedure for the direct N-acylation of some purine and pyrimidine nucleobases via carboxylic acids using cyanuric chloride. Monatsh. Chem. 2014, 145, 1933–1940. [Google Scholar] [CrossRef]
- Marcantonio, E.; Guazzetti, D.; Coppa, C.; Battistini, L.; Sartori, A.; Bugatti, K.; Provinciael, B.; Curti, C.; Contini, A.; Vermeire, K.; et al. The chiral 5,6-cyclohexane-fused uracil ring-system: A molecular platform with promising activity against SARS-CoV-2. Eur. J. Med. Chem. 2025, 286, 117302. [Google Scholar] [CrossRef] [PubMed]
- Klarek, M.; Schäfer, T.; Gorski, A.; Dutkiewicz, N.; Hikisz, P.; Gapinska, M.; Trzybiński, D.; Woźniak, K.; Müller, J.; Kowalski, K. Luminescent Click-Pyrenyl Nucleosides: As Novel Building Blocks for Nucleic Acids: Synthesis, Photophysics, Confocal Microscopy Studies, and Oligonucleotide Conjugation. Eur. J. Org. Chem. 2025, 28, e202500559. [Google Scholar] [CrossRef]
- Körber, M.; Rühle, J.; Halter, F.; Mokhir, A. Hydrogen Peroxide-Responsive Aminoferrocene Prodrugs. Eur. J. Org. Chem. 2025, 28, e202500294. [Google Scholar] [CrossRef]
- Meng, Y.; Sun, N.; Liang, L.; Yu, B.; Chang, J. 2′-Fluorinated nucleoside chemistry for new drug discovery: Achievements and prospects. Natl. Sci. Rev. 2024, 11, nwae331. [Google Scholar] [CrossRef]
- Chellan, P.; Sadler, P.J. Enhancing the Activity of Drugs by Conjugation to Organometallic Fragments. Chem. Eur. J. 2020, 26, 8676–8688. [Google Scholar] [CrossRef]
- Biegański, P.; Godel, M.; Riganti, C.; Fábio Kawano, D.; Kopecka, J.; Kowalski, K. Click ferrocenyl-erlotinib conjugates active against erlotinib-resistant non-small cell lung cancer cells in vitro. Bioorganic Chem. 2022, 119, 105514. [Google Scholar] [CrossRef]
- Ji, C.; Dong, R.; Zhang, P.; Tao, R.; Wang, X.; Dai, Q.; Liu, X.; Yuan, X.A.; Zhang, S.; Yue, M.; et al. Ferrocene-modified half-sandwich iridium(III) and ruthenium(II) propionylhydrazone complexes and anticancer application. J. Inorg. Biochem. 2024, 257, 112586. [Google Scholar] [CrossRef]
- Savani, C.J.; Pateliya, R.B.; Srivastava, R.R.; Vennapu, D.R.; Nath, S.; Singh, A.K.; Roy, H.; Rajak, D.K.; Singh, V.K. Dependence of anti-proliferative activity on chirality and redox potentials (Eh) of new ferrocene derivatives: Synthesis, crystallographic, photophysical and in-silico study. J. Organomet. Chem. 2023, 1001, 122854. [Google Scholar] [CrossRef]
- Szlaużys, M.; Ostrowski, K.; Nowak, D.; Prukała, W.; Starzyk, J.; Jasiewicz, B.; Mrówczyńska, L. Hybrid Uracil Derivatives with Caffeine and Gramine Obtained via Click Chemistry as Potential Antioxidants and Inhibitors of Plant Pathogens. Molecules 2025, 30, 2714. [Google Scholar] [CrossRef]
- Skiba, J.; Yuan, Q.; Hildebrandt, A.; Lang, H.; Trzybiński, D.; Woźniak, K.; Balogh, R.K.; Gyurcsik, B.; Vrček, V.; Kowalski, K. Ferrocenyl GNA Nucleosides: A Bridge between Organic and Organometallic Xeno-nucleic Acids. ChemPlusChem. 2018, 83, 77–86. [Google Scholar] [CrossRef] [PubMed]
- Liu, M.; Zhang, J. Synthesis and fluorescence of pyrazolines substituted with pyrimidine and ferrocene subunits. Heterocycl. Commun. 2016, 22, 31–35. [Google Scholar] [CrossRef]
- Kowalski, K.; Koceva-Chyla, A.; Pieniazek, A.; Bernasinska, J.; Skiba, J.; Rybarczyk-Pirek, A.J.; Jozwiak, Z. The synthesis, structure, electrochemistry and in vitro anticancer activity studies of ferrocenyl-thymine conjugates. J. Organomet. Chem. 2012, 700, 58–68. [Google Scholar] [CrossRef]
- Palasz, A.; Cież, D. In search of uracil derivatives as bioactive agents. Uracils and fused uracils: Synthesis, biological activity and applications. Eur. J. Med. Chem. 2015, 97, 582–611. [Google Scholar] [CrossRef]
- Wang, R.; Chen, H.; Yan, W.; Zheng, M.; Zhang, T.; Zhang, Y. Ferrocene-containing hybrids as potential anticancer agents: Current developments, mechanisms of action and structure-activity relationships. Eur. J. Med. Chem. 2020, 190, 112109. [Google Scholar] [CrossRef] [PubMed]
- Skiba, J.; Hirschfeld, M.; Lang, H.; Trzybiński, D.; Woźniak, K.; Gazecka, M.; Zmora, P.; Kowalski, K. Click-ferrocenyl nucleotides-synthesis, electrochemistry, and antiproliferative activity studies. J. Organomet. Chem. 2024, 1016, 123242. [Google Scholar] [CrossRef]
- Lapić, J.; Havaić, V.; Šakić, D.; Sanković, K.; Djaković, S.; Vrček, V. Ferrocenoyl-Substituted Pyrimidine Nucleobases: An Experimental and Computational Study of Regioselective Acylation of Uracil, Thymine, and 5-Fluorouracil. Eur. J. Org. Chem. 2015, 24, 5424–5431. [Google Scholar] [CrossRef]
- Toma, M.; Božičević, L.; Lapić, J.; Djaković, S.; Šakić, D.; Tandarić, T.; Vianello, R.; Vrček, V. Transacylation in Ferrocenoyl-Purines. NMR and Computational Study of the Isomerization Mechanism. J. Org. Chem. 2019, 84, 12471. [Google Scholar] [CrossRef]
- Boumi, S.; Moghimirad, J.; Amanlou, M.; Ostad, S.N.; Tavajohi, S.; Amini, M. Synthesis, evaluation of biological activity, docking and molecular dynamic studies of pyrimidine derivatives. Lett. Org. Chem. 2021, 18, 212–225. [Google Scholar] [CrossRef]
- Kaur, R.; Roychowdhury, T.; Kinarivala, N.; Kaur, K.; Sanduja, M.; Sharma, S. Recent Expansions in the Potential of Uracil Derivatives as Chemotherapeutic, Antimicrobial, and Antiviral Agents: A Review. ChemistrySelect 2025, 10, e202406021. [Google Scholar] [CrossRef]
- Havaić, V.; Djaković, S.; Lapić, J.; Weitner, T.; Šakić, D.; Vrček, V. Reduction Potential of Ferrocenoyl-Substituted Nucleobases. Experimental and Computational Study. Croat. Chem. Acta 2017, 90, 589–594. [Google Scholar] [CrossRef]
- Lapić, J.; Djaković, S.; Kodrin, I.; Mihalić, Z.; Cetina, M.; Rapić, V. Preparation and Conformation Analysis of N-(Ferrocenoyl)dipeptide Esters and Their 1-Acetyl Derivatives. Eur. J. Org. Chem. 2010, 13, 2512–2524. [Google Scholar] [CrossRef]
- Majid, M.; Heravi, M.G.; Mohammadkhani, L. Beyond a solvent: Triple roles of dimethylformamide in organic chemistry. RSC Adv. 2018, 8, 27832–27862. [Google Scholar] [CrossRef]
- Toma, M.; Zubčić, G.; Lapić, J.; Djaković, S.; Šakić, D.; Vrček, V. Ferrocenoyl-adenines: Substituent effects on regioselective acylation. Beilstein J. Org. Chem. 2022, 18, 1270–1277. [Google Scholar] [CrossRef]
- Kumagai, N.; Matsunaga, S.; Shibasaki, M. Cooperative Catalysis of a Cationic Ruthenium Complex, Amine Base, and Na Salt: Catalytic Activation of Acetonitrile as a Nucleophile. J. Am. Chem. Soc. 2004, 126, 13632–13633. [Google Scholar] [CrossRef]
- Gomes, A.; Fernandes, E.; Lima, J.L.F.C. Fluorescence probes used for detection of reactive oxygen species. J. Biochem. Biophys. Methods 2005, 65, 45–80. [Google Scholar] [CrossRef]
- Vinay, D.S.; Ryan, E.P.; Pawelec, G.; Talib, W.H.; Stagg, J.; Elkord, E.; Lichtor, T.; Decker, W.K.; Whelan, R.L.; Kumara, H.M.C.S.; et al. Immune evasion in cancer: Mechanistic basis and therapeutic strategies. Semin. Cancer Biol. 2015, 35, S185–S198. [Google Scholar] [CrossRef]
- Chopra, R.; De Kock, C.A.; Smith, P.; Chibale, K.; Singh, K. Ferrocene-pyrimidine conjugates: Synthesis, electrochemistry, physicochemical properties and antiplasmodial activities. Eur. J. Med. Chem. 2015, 100, 1–9. [Google Scholar] [CrossRef]
- Simenel, A.A.; Dokuchaeva, G.A.; Snegur, L.V.; Rodionova, A.N.; Ilyina, M.M.; Zykova, S.I.; Ostrovskaya, L.A.; Bluchterova, N.V.; Fomina, M.M.; Rikova, V.A. Ferrocene-modified thiopyrimidines: Synthesis, enantiomeric resolution, antitumor activity. Appl. Organomet. Chem. 2011, 25, 70–75. [Google Scholar] [CrossRef]
- Das, S.; Borkotoky, S.; Rymbai, M.; Borah, V.V.; Roy, J.D.; Kaping, S.; Helissey, P.; Vishwakarma, J.N. Novel ferrocene-pyrazolo [1,5-a]pyrimidine hybrids: A facile environment-friendly regioselective synthesis, structure elucidation, and their antioxidant, antibacterial, and anti-biofilm activities. J. Chem. Sci. 2022, 134, 79. [Google Scholar] [CrossRef]
- Frisch, M.J.; Trucks, G.W.; Schlegel, H.B.; Scuseria, G.E.; Robb, M.A.; Cheeseman, J.R.; Scalmani, G.; Barone, V.; Petersson, G.A.; Nakatsuji, H.; et al. Gaussian, version 16; Revision C.01; Gaussian, Inc.: Wallingford, CT, USA, 2016.
- Habjanec, L.; Frkanec, R.; Halassy, B.; Tomašić, J. Effect of liposomal formulations and immunostimulating peptidoglycan monomer (PGM) on the immune reaction to ovalbumin in mice. J. Liposome Res. 2006, 16, 1–16. [Google Scholar] [CrossRef] [PubMed]
- Halassy, B.; Krstanović, M.; Frkanec, R.; Tomašić, J. Adjuvant activity of peptidoglycan monomer and its metabolic products. Vaccine 2003, 21, 971. [Google Scholar] [CrossRef] [PubMed]









| Lines | Base | Solvent | Reaction Time/min | 4a η (%) | 6a η (%) | 4a:6a |
|---|---|---|---|---|---|---|
| 1 2 3 | NaH K2CO3 Et3N | DMF | 30 | 65 45 30 | - - - | |
| 4 5 6 | NaH K2CO3 Et3N | 60 | 72 49 24 | - - - | ||
| 7 8 9 | NaH K2CO3 Et3N | 90 | 74 68 52 | - - - | ||
| 10 11 12 | NaH K2CO3 Et3N | CH3CN | 30 | 41 5 20 | - - 3 | - - 87:13 |
| 13 14 15 | NaH K2CO3 Et3N | 60 | 60 17 19 | 4 3 14 | 94:6 85:15 62:38 | |
| 16 17 18 | NaH K2CO3 Et3N | 90 | 45 62 42 | 7 3 27 | 87:13 96:4 60:40 | |
| 19 20 21 | NaH K2CO3 Et3N | 1,4-dioxane | 60 | - - 17 | - - 4 | - - 83:17 |
| 22 | Et3N | 90 | 15 | 3 | 84:16 |
| Lines | Product | η (%) | Product | η (%) | 4:6 | |
|---|---|---|---|---|---|---|
| 1 | Method A | 4a | 74 | 6a | - | - |
| 2 | 4b | 41 | 6b | - | - | |
| 3 | 4c | 75 | 6c | - | - | |
| 4 | 4d | 76 | 6d | - | - | |
| 5 | 4e | 68 | 6e | - | - | |
| 6 | 4f | 65 | 6f | - | - | |
| 7 | Method B | 4a | 45 | 6a | 33 | 58:42 |
| 8 | 4b | 59 | 6b | 22 | 74:26 | |
| 9 | 4c | 48 | 6c | 32 | 59:41 | |
| 10 | 4d | 23 | 6d | 35 | 50:50 | |
| 11 | 4e | 35 | 6e | 30 | 52:48 | |
| 12 | 4f | 34 | 6f | 32 | 54:46 |
Disclaimer/Publisher’s Note: The statements, opinions and data contained in all publications are solely those of the individual author(s) and contributor(s) and not of MDPI and/or the editor(s). MDPI and/or the editor(s) disclaim responsibility for any injury to people or property resulting from any ideas, methods, instructions or products referred to in the content. |
© 2026 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license.
Share and Cite
Lapić, J.; Kuzman, I.; Frkanec, R.; Frkanec, L.; Djaković, S. Ferrocenoylation of Uracil Derivatives: Study of Reaction Regioselectivity and Biological Activity. Molecules 2026, 31, 1054. https://doi.org/10.3390/molecules31061054
Lapić J, Kuzman I, Frkanec R, Frkanec L, Djaković S. Ferrocenoylation of Uracil Derivatives: Study of Reaction Regioselectivity and Biological Activity. Molecules. 2026; 31(6):1054. https://doi.org/10.3390/molecules31061054
Chicago/Turabian StyleLapić, Jasmina, Ivana Kuzman, Ruža Frkanec, Leo Frkanec, and Senka Djaković. 2026. "Ferrocenoylation of Uracil Derivatives: Study of Reaction Regioselectivity and Biological Activity" Molecules 31, no. 6: 1054. https://doi.org/10.3390/molecules31061054
APA StyleLapić, J., Kuzman, I., Frkanec, R., Frkanec, L., & Djaković, S. (2026). Ferrocenoylation of Uracil Derivatives: Study of Reaction Regioselectivity and Biological Activity. Molecules, 31(6), 1054. https://doi.org/10.3390/molecules31061054

