Whole-Cell Biocatalysis for the Production of Structurally Diverse Methoxydihydrochalcones: Broad Activity of the Yarrowia Clade
Abstract
1. Introduction
2. Results and Discussion
3. Materials and Methods
3.1. Substrates
3.2. Microorganisms
3.3. Screening
3.4. Preparative Scale
3.5. TLC and NMR Analysis
3.6. UPLC
3.7. Bioinformatics Analysis
4. Conclusions
Supplementary Materials
Author Contributions
Funding
Institutional Review Board Statement
Informed Consent Statement
Data Availability Statement
Acknowledgments
Conflicts of Interest
References
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| Number | Strain | Abbreviation |
|---|---|---|
| 1 | Yarrowia lipolytica W-29 (control) | YALI |
| 2 | Candida osloensis CBS10146 | YAOS |
| 3 | Yarrowia phangngaensis CBS10407 | YAPH |
| 4 | Yarrowia parophonii CBS12427 | YAPA |
| 5 | Candida hispaniensis CBS9996 | OLHI |
| 6 | Yarrowia bubula CBS12934 | YABU |
| 7 | Candida alimentaria CBS10151 | YAAL |
| 8 | Yarrowia keelungensis CBS11062 | YAKE |
| 9 | Yarrowia brassicae CBS15225 | YABR |
| 10 | Yarrowia deformans CBS2071 | YADE |
| 11 | Yarrowia divulgata CBS11013 | YADI |
| 12 | Yarrowia yakushimensis CBS10253 | YAYA |
| 13 | Yarrowia lipolytica 24lIV | 24lIV |
| 14 | Yarrowia lipolytica 24lI | 24lI |
| 15 | Yarrowia lipolytica KCh 71 | KCh71 |
| 16 | Yarrowia lipolytica H222 | H222 |
| 17 | Yarrowia lipolytica ClY29-26-3 | ClY29-26-3 |
| 18 | Yarrowia lipolytica A101 | A101 |
| 19 | Candida galli CBS9722 | YAGA |
| 20 | Yarrowia porcina CBS12932 | YAPO |
| 21 | Candida hollandica CBS4855 | YAHO |
| Strain | 1 h | 12 h | 24 h | ||||||
|---|---|---|---|---|---|---|---|---|---|
| 1a | 1b | 1c | 1a | 1b | 1c | 1a | 1b | 1c | |
| YALI | 10.9 ± 7.7 | 12.6 ± 9.6 | 76.6 ± 8.5 | 3.0 ± 0.8 | 16.2 ± 3.4 | 80.7 ± 4.2 | 2.4 ± 0.5 | 13.9 ± 2.8 | 83.7 ± 3.3 |
| YAOS | 15.2 ± 1.6 | 11.6 ± 3.2 | 73.3 ± 4.7 | 5.0 ± 0.4 | 21.9 ± 2.4 | 73.1 ± 2.0 | 3.4 ± 0.4 | 19.5 ± 2.4 | 77.1 ± 2.8 |
| YAPH | 10.0 ± 6.4 | 15.8 ± 4.6 | 74.2 ± 2.8 | 3.6 ± 0.4 | 21.5 ± 2.9 | 74.9 ± 3.3 | 2.5 ± 0.0 | 14.1 ± 0.4 | 83.4 ± 0.4 |
| YAPA | 16.0 ± 4.9 | 12.6 ± 2.3 | 71.4 ± 3.7 | 4.1 ± 1.1 | 17.1 ± 3.3 | 78.8 ± 4.5 | 2.7 ± 0.5 | 15.6 ± 2.8 | 81.7 ± 3.3 |
| OLHI | 62.1 ± 3.2 | 5.3 ± 1.5 | 32.6 ± 1.6 | 11.2 ± 1.1 | 37.0 ± 2.0 | 51.8 ± 1.0 | 4.9 ± 1.0 | 25.8 ± 5.1 | 69.2 ± 6.0 |
| YABU | 21.8 ± 2.9 | 14.4 ± 2.8 | 63.7 ± 1.3 | 6.6 ± 1.8 | 29.6 ± 0.4 | 63.8 ± 1.4 | 4.8 ± 1.3 | 26.5 ± 6.7 | 68.7 ± 8.0 |
| YAAL | 20.3 ± 1.3 | 17.9 ± 7.3 | 61.9 ± 6.4 | 3.9 ± 0.8 | 22.8 ± 3.7 | 73.3 ± 4.5 | 1.6 ± 0.6 | 9.1 ± 2.9 | 89.3 ± 3.6 |
| YAKE | 7.0 ± 6.1 | 11.4 ± 9.1 | 81.5 ± 7.8 | 3.2 ± 0.8 | 15.0 ± 4.0 | 81.8 ± 4.7 | 1.4 ± 0.5 | 8.7 ± 3.5 | 89.9 ± 4.0 |
| YABR | 10.8 ± 2.7 | 40.7 ± 7.6 | 48.5 ± 7.5 | 7.4 ± 0.2 | 30.0 ± 4.2 | 62.6 ± 4.5 | 3.8 ± 0.3 | 22.0 ± 1.9 | 74.2 ± 2.2 |
| YADE | 6.9 ± 5.5 | 18.9 ± 4.2 | 74.2 ± 9.7 | 3.8 ± 1.3 | 22.1 ± 6.5 | 74.1 ± 7.8 | 2.5 ± 1.1 | 13.7 ± 5.8 | 83.9 ± 6.9 |
| YADI | 16.7 ± 4.5 | 21.7 ± 7.9 | 61.6 ± 9.3 | 3.6 ± 1.2 | 19.8 ± 5.1 | 76.7 ± 6.3 | 2.1 ± 1.3 | 12.1 ± 7.8 | 85.8 ± 9.2 |
| YAYA | 37.7 ± 6.2 | 32.1 ± 2.1 | 30.3 ± 8.2 | 14.5 ± 1.2 | 62.1 ± 0.8 | 23.3 ± 1.2 | 10.3 ± 1.9 | 50.4 ± 6.7 | 39.3 ± 6.9 |
| 24lIV | 27.9 ± 18.3 | 22.3 ± 6.8 | 49.8 ± 11.7 | 9.8 ± 1.8 | 33.1 ± 3.4 | 57.1 ± 4.6 | 3.1 ± 1.1 | 17.9 ± 6.2 | 79.0 ± 7.2 |
| 24lI | 17.6 ± 7.4 | 29.1 ± 3.0 | 53.3 ± 9.0 | 5.2 ± 0.5 | 30.4 ± 2.1 | 64.4 ± 2.6 | 5.5 ± 0.6 | 31.8 ± 2.8 | 62.7 ± 3.4 |
| KCh 71 | 9.0 ± 5.1 | 21.4 ± 10.7 | 69.7 ± 5.6 | 3.3 ± 0.3 | 20.4 ± 2.2 | 76.3 ± 2.5 | 2.9 ± 0.0 | 16.1 ± 0.5 | 81.0 ± 0.5 |
| H222 | 24.5 ± 2.1 | 28.7 ± 5.2 | 46.9 ± 4.2 | 8.7 ± 0.2 | 50.7 ± 1.1 | 40.7 ± 1.3 | 6.5 ± 0.8 | 37.7 ± 4.8 | 55.9 ± 5.6 |
| ClY29-26-3 | 4.0 ± 2.1 | 7.5 ± 3.9 | 88.5 ± 6.0 | 1.6 ± 0.1 | 9.7 ± 0.5 | 88.7 ± 0.6 | 0.8 ± 0.1 | 4.6 ± 1.0 | 94.6 ± 1.1 |
| A101 | 6.7 ± 1.8 | 23.5 ± 5.8 | 69.8 ± 4.7 | 2.6 ± 0.7 | 16.1 ± 3.1 | 81.3 ± 3.8 | 1.5 ± 0.5 | 8.3 ± 3.0 | 90.3 ± 3.5 |
| YAGA | 8.3 ± 0.3 | 16.4 ± 9.3 | 75.3 ± 9.5 | 3.5 ± 1.5 | 20.2 ± 8.0 | 76.2 ± 9.6 | 2.3 ± 1.1 | 13.4 ± 6.6 | 84.3 ± 7.8 |
| YAPO | 9.3 ± 3.7 | 31.2 ± 9.5 | 59.5 ± 5.8 | 5.7 ± 0.3 | 31.3 ± 1.3 | 63.0 ± 1.6 | 5.3 ± 1.1 | 30.3 ± 5.3 | 64.4 ± 6.4 |
| YAHO | 7.4 ± 5.6 | 32.5 ± 8.7 | 60.1 ± 14.0 | 4.0 ± 2.0 | 24.7 ± 10.8 | 71.3 ± 12.8 | 1.5 ± 0.9 | 8.5 ± 4.9 | 89.9 ± 5.8 |
| Compound | |||||||
|---|---|---|---|---|---|---|---|
| Atom No. | 1a | 2a | 3a | 4a | 5a | 6a | 7a |
| C=O | 188.16 | 188.44 | 188.22 | 188.13 | 188.44 | 188.25 | 189.49 |
| C-α | 122.88 | 122.89 | 123.08 | 120.35 | 120.21 | 123.27 | 121.81 |
| C-β | 143.95 | 139.00 | 143.99 | 143.91 | 139.21 | 144.14 | 135.37 |
| C-1 | 136.25 | 124.73 | 137.59 | 128.80 | 117.66 | 138.12 | 106.90 |
| C-1′ | 132.01 | 132.19 | 131.95 | 132.23 | 132.48 | 131.94 | 132.92 |
| C-2 | 129.40 | 159.06 | 114.05 | 131.17 | 161.20 | 107.21 | 162.63 |
| C-2′/C-6′ | 131.63 | 131.76 | 131.65 | 131.48 | 131.36 | 131.66 | 131.16 |
| C-3 | 129.80 | 112.35 | 161.13 | 115.23 | 130.93 | 162.21 | 91.65 |
| C-3′/C-5′ | 114.75 | 114.70 | 114.73 | 114.66 | 114.62 | 114.54 | 114.57 |
| C-4 | 129.80 | 132.60 | 122.06 | 162.58 | 106.91 | 103.32 | 164.32 |
| C-4′ | 164.53 | 164.40 | 164.52 | 164.33 | 164.17 | 164.53 | 163.96 |
| C-5 | 129.80 | 121.56 | 130.77 | 115.23 | 164.18 | 162.21 | 91.65 |
| C-6 | 129.40 | 129.37 | 117.10 | 131.17 | 99.02 | 107.21 | 162.63 |
| C-2 OCH3 | — | 56.06 | — | — | 56.12 | — | 56.36 |
| C-3 OCH3 | — | — | 55.96 | — | — | 55.83 | — |
| C-4 OCH3 | — | — | — | 55.78 | — | — | 55.86 |
| C-4′ OCH3 | 55.97 | 55.93 | 55.70 | 55.93 | 56.09 | 55.97 | 55.88 |
| C-5 OCH3 | — | — | — | — | 55.89 | 55.83 | — |
| C-6 OCH3 | — | — | — | — | — | — | 56.36 |
| Compound | ||||||
|---|---|---|---|---|---|---|
| Atom No. | 1c | 2c | 3c | 4c | 5c | 6c |
| C=O | 197.75 | 198.21 | 197.76 | 197.87 | 198.36 | 197.80 |
| C-α | 40.41 | 39.00 | 40.31 | 40.67 | 39.30 | 40.26 |
| C-β | 30.89 | 26.32 | 30.93 | 30.03 | 25.77 | 31.22 |
| C-1 | 142.71 | 130.44 | 144.24 | 134.47 | 131.09 | 144.99 |
| C-1′ | 131.06 | 131.06 | 131.02 | 131.05 | 122.5 | 131.06 |
| C-2 | 129.33 | 158.52 | 115.02 | 130.21 | 159.30 | 107.32 |
| C-2′/C-6′ | 131.06 | 131.06 | 131.04 | 131.02 | 131.04 | 131.06 |
| C-3 | 129.18 | 111.23 | 160.78 | 114.56 | – | 161.92 |
| C-3′/C-5′ | 114.57 | 114.57 | 114.55 | 114.54 | 114.54 | 114.57 |
| C-4 | 126.70 | 128.25 | 121.51 | 158.97 | 105.09 | 98.59 |
| C-4′ | 164.41 | 164.36 | 164.37 | 164.34 | 164.31 | 164.40 |
| C-5 | 129.18 | 121.21 | 130.12 | 114.56 | 160.59 | 161.92 |
| C-6 | 129.33 | 130.73 | 112.09 | 130.21 | 130.99 | 107.32 |
| C-2 OCH3 | - | 55.63 | – | – | 55.67 | – |
| C-3 OCH3 | - | – | 55.33 | – | – | 55.46 |
| C-4 OCH3 | - | – | – | 55.41 | – | – |
| C-4′ OCH3 | 55.91 | 55.90 | 55.89 | 55.88 | 55.89 | 55.91 |
| C-5 OCH3 | - | – | – | – | 55.54 | 55.46 |
| C-6 OCH3 | - | – | – | – | – | – |
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Chlipała, P.; Mazur, M.; Kancelista, A.; Lazar, Z.; Janeczko, T. Whole-Cell Biocatalysis for the Production of Structurally Diverse Methoxydihydrochalcones: Broad Activity of the Yarrowia Clade. Molecules 2026, 31, 1049. https://doi.org/10.3390/molecules31061049
Chlipała P, Mazur M, Kancelista A, Lazar Z, Janeczko T. Whole-Cell Biocatalysis for the Production of Structurally Diverse Methoxydihydrochalcones: Broad Activity of the Yarrowia Clade. Molecules. 2026; 31(6):1049. https://doi.org/10.3390/molecules31061049
Chicago/Turabian StyleChlipała, Paweł, Marcelina Mazur, Anna Kancelista, Zbigniew Lazar, and Tomasz Janeczko. 2026. "Whole-Cell Biocatalysis for the Production of Structurally Diverse Methoxydihydrochalcones: Broad Activity of the Yarrowia Clade" Molecules 31, no. 6: 1049. https://doi.org/10.3390/molecules31061049
APA StyleChlipała, P., Mazur, M., Kancelista, A., Lazar, Z., & Janeczko, T. (2026). Whole-Cell Biocatalysis for the Production of Structurally Diverse Methoxydihydrochalcones: Broad Activity of the Yarrowia Clade. Molecules, 31(6), 1049. https://doi.org/10.3390/molecules31061049

