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Article

Cytotoxic Peptidic Metabolites Isolated from the Soil-Derived Fungus Trichoderma atroviride

1
College of Pharmacy, Chungbuk National University, Cheongju 28160, Republic of Korea
2
College of Pharmacy, Duksung Women’s University, Seoul 01369, Republic of Korea
3
Department of AI Drug Discovery, Duksung Women’s University, Seoul 01369, Republic of Korea
*
Authors to whom correspondence should be addressed.
These authors contributed equally to this work.
Molecules 2025, 30(16), 3422; https://doi.org/10.3390/molecules30163422
Submission received: 2 July 2025 / Revised: 7 August 2025 / Accepted: 8 August 2025 / Published: 19 August 2025
(This article belongs to the Special Issue Discovery of Microbial Natural Products)

Abstract

Twelve undescribed peptidic compounds, bukhansantaibols A–K (110) and bukhansantaibals A–B (1112), were isolated from the soil fungus Trichoderma atroviride through LC-MS and bioactivity-guided purification. Their structures were elucidated by the analysis of 1D and 2D NMR spectra, HRESIMS, and acid hydrolysis using modified Marfey’s method. All compounds were evaluated for their cytotoxic activity against HCT-8 (colon cancer) and SK-OV-3 (ovarian cancer) cells. Among them, compounds 15 exhibited significant inhibitory effects, with IC50 values ranging from 2.1 to 19.6 μM.

Graphical Abstract

1. Introduction

Peptaibols are fungal secondary metabolites produced by non-ribosomal peptide synthetases (NRPSs) and constitute a class of linear peptides characterized by N-terminal acetylation, the incorporation of non-proteinogenic amino acids, and a C-terminal amino alcohol [1,2]. Peptaibols are mainly produced by fungi belonging to the order Hypocreales, which includes culturable genera such as Trichoderma and Escovopsis [3]. Recently, the weeding behaviour of the leaf-cutting fungus-growing ant Trachymyrmex septentrionalis was reported to be triggered by the detection of peptaibols [4]. The production of peptaibol compounds during mycoparasitic interactions has inspired studies on their antimicrobial properties, which have been experimentally validated in various systems [5,6]. Their proposed mechanism of action—formation of transmembrane ion channels leading to cell lysis—has also prompted investigations into their cytotoxic potential against a range of cancer cells [7,8,9].
Through inter-university collaboration research, we aimed to discover novel peptaibols with cell membrane-permeable properties from soil fungi. As a result of this effort, BHM16-2 strain from the BHM collection was identified to produce peptaibols, as confirmed by our in-house HPLC analysis and dereplication process. Large-scale cultivation of this fungus was carried out, and 12 new peptidic molecules were purified using multiple rounds of column chromatography and preparative HPLC purification. The isolated compounds were subsequently evaluated for their cytotoxic activities against HCT-8 (colon cancer) and SK-OV-3 (ovarian cancer) cell lines. Herein, we report the isolation, structure elucidation, and bioactivity of these 12 novel peptaibols.

2. Results and Discussion

In an effort to discover novel cytotoxic molecules, the Natural Products Drug Discovery laboratory at Duksung Women’s University has established a fungal library comprising approximately 2000 fungal strains. Crude extracts of these strains have been subjected to in-house HPLC analysis for preliminary dereplication [10,11]. Among these, the BHM collection (Bukhansan Mountain collection) comprises approximately 200 soil fungi strains isolated from 33 different locations in the Bukhansan Mountain area, located in northern Seoul, South Korea. Within this collection, the strain BHM16-2, isolated near Insubong Peak, was identified as a peptaibol-producing fungus. Given the well-known membrane-permeable properties of peptaibols and their associated antimicrobial and cytotoxic activities, we performed further dereplication using HRESIMS data, which revealed that BHM16-2 produces a new class of peptaibols. Based on this dereplication, BHM16-2 was selected for large-scale cultivation, and reproducibility of the novel peptaibol production was confirmed in the large-scale extract by the HRESIMS analysis. A total of 12 metabolites (112) were isolated, and their structures were elucidated. Several of these compounds featured modifications at the C-terminal amino acid residues. Notably, all isolates were determined to be new natural molecules. Herein, we report the structure elucidation of the 12 novel peptidic compounds and the evaluation of their cytotoxic activities against cancer cells.
Compound 1 (Structure shown in Table 1) was isolated as a white amorphous powder, and its molecular formula was determined as C91H149N23O24 by the HRESIMS data (m/z 975.0645 [M + 2H]2+; calcd 975.0646). The 1H and 13C-NMR spectrum of 1 exhibited characteristic features of a peptaibol, including 24 exchangeable amide proton signals in the range of δH 7.28–9.93, α-proton signals in the range of δH 4.06–5.02, and an acetyl CH3 at δH 2.07, and 23 methyl group proton signals within δH 0.85–1.83 (Table 2 and Table 3, Figures S2 and S3) [12]. The primary amino acid sequence of 1 was elucidated based on the ROESY correlations between sequential amide protons. In particular, the connectivity among Aib12, Pro13, and Val14 was supported by the ROESY correlations between the NH proton of Aib12H 8.53) and the δ-protons of Pro13H 3.99 and 4.07), as well as between a proton of Pro13H 4.57) and the NH proton of Val14H 8.04). The spin systems of individual amino acid residues were further confirmed by TOCSY experiments (Figure 1). The presence of the non-proteinogenic amino acids Aib and Valol was validated through analysis of COSY and HMBC spectra. The COSY correlations among geminal methylene protons (δH 4.04 and 4.08), methine protons (δH 2.38 and 4.27), and methyl protons (δH 1.19 and 1.04) confirmed the presence of a Valol residue at the C-terminal end. In addition, the HMBC correlations from the α-methyl protons of Aib to the corresponding α-carbons, along with the correlations from neighbouring NH protons to the carbonyl carbon of Aib, further substantiated the assignment and position of each Aib residue (Figure 1). The presence of an N-terminal acetyl group was established based on the HMBC correlations among the acetyl methyl proton (δH 2.07), the NH proton (δH 9.45), and the α-proton of Trp1H 5.02) with the acetyl carbonyl carbon (δC 172.5). The absolute configurations of the amino acid residues were determined by modified Marfey’s analysis [13] which identified Trp, Ala, Gln, Ser, Leu, Pro, Val, Ile, and Valol as possessing the L-configuration (Figure S13). The negative Cotton effect around 205 nm was observed on the electronic circular dichroism (ECD) spectrum, suggesting that compound 1 adopts a right-handed helical conformation (Figure S11) [14]. Based on these results, the complete structure of compound 1 was determined to be N-acetyl-L-Trp1-Gly2-L-Ala3-Aib4-Aib5-L-Gln6-Aib7-Aib8-Aib9-L-Ser10-L-Leu11-Aib12-L-Pro13-L-Val14-Aib15-L-Ile16-L-Gln17-L-Gln18-L-Valol19, and it was designated as bukhansantaibol A (1).
Compound 2 was obtained as a white amorphous powder and exhibited the same exact mass as 1 (m/z 975.0643 [M + 2H]2+; calcd 975.0646), consistent with the molecular formula C91H149N23O24. The 1H and 13C-NMR spectra of 2 closely resembled those of 1 (Tables S1 and S2, and Figures S14 and S15). However, detailed analysis of the COSY and HMBC spectra revealed a substitution of the Ile16 residue in 1 with a Leu residue in 2 (Table 1). This substitution was supported by the TOCSY correlations corresponding to a leucine spin system, including the NH proton (δH 7.89), α-methine proton (δH 4.55), β-methylene protons (δH 1.91 and 2.01), γ-methine proton (δH 2.16), and two δ-methyl doublets (δH 0.96 and 0.86), indicating the presence of Leu at position 16. Furthermore, modified Marfey’s analysis yielded only the L-FDLA derivative of Leu, confirming the exclusive incorporation of L-Leu at this position (Figure S25). The ECD spectrum also indicated a right-handed helical conformation, consistent with compound 1 (Figure S23). Accordingly, the structure of compound 2 was determined to be N-acetyl-L-Trp1-Gly2-L-Ala3-Aib4-Aib5-L-Gln6-Aib7-Aib8-Aib9-L-Ser10-L-Leu11-Aib12-L-Pro13-L-Val14-Aib15-L-Leu16-L-Gln17-L-Gln18-L-Valol19, and it was designated as bukhansantaibol B (2).
Compound 3 was obtained as a white amorphous powder, and its molecular formula was determined to be C89H148N22O24 based on the HRESIMS data (m/z 955.5593 [M + 2H]2+; calcd 955.5591). The 1H-NMR spectrum of 3 closely resembled that of 1, except for distinct aromatic proton signals at δH 7.34 (2H, m), 7.27 (2H, m), and 7.23 (1H, m), consistent with the presence of a phenyl moiety (Table S3 and Figure S26). The TOCSY correlations from the amide proton (δH 9.58) to the β-methylene protons (δH 3.33 and 3.43) confirmed the spin system of a phenylalanine residue. The position of this phenylalanine residue at the N-terminus was supported by HMBC correlations from the N-acetyl methyl proton (δH 2.07) and the amide proton of phenylalanine (δH 9.58) to the acetyl carbonyl carbon (δC 172.2). Furthermore, modified Marfey’s analysis verified the substitution of the N-terminal Trp with Phe and confirmed the L-configuration of all amino acid residues (Figure S37). In addition, the ECD spectrum indicated a right-handed helical conformation (Figure S35). Based on these findings, the structure of compound 3 was determined to be N-acetyl-L-Phe1-Gly2-L-Ala3-Aib4-Aib5-L-Gln6-Aib7-Aib8-Aib9-L-Ser10-L-Leu11-Aib12-L-Pro13-L-Val14-Aib15-L-Ile16-L-Gln17-L-Gln18-L-Valol19, and it was designated as bukhansantaibol C (3).
Compound 4 was isolated as a white amorphous powder, and the HRESIMS analysis established its molecular formula as C91H149N23O23 (m/z 967.0672 [M + 2H]2+; calcd 967.0671), indicating a deficiency of one oxygen atom compared to 1 (Table 1). Comparison of the 1D and 2D NMR spectra with those of 1 revealed the substitution of Ser10 with Ala10 in compound 4 (Tables S5 and S6, and Figures S38–S44). Furthermore, modified Marfey’s analysis detected only alanine, not serine, supporting the presence of two alanine residues in 4 (Figure S49). The ECD spectrum also supported a right-handed helical conformation, consistent with the structural characteristics observed in related peptaibols (Figure S47). Thus, the structure of 4 was determined as N-acetyl-L-Trp1-Gly2-L-Ala3-Aib4-Aib5-L-Gln6-Aib7-Aib8-Aib9-L-Ala10-L-Leu11-Aib12-L-Pro13-L-Val14-Aib15-L-Ile16-L-Gln17-L-Gln18-L-Valol19 and named as bukhansantaibol D (4).
Compound 5 showed the molecular formula of C91H148N22O25 by the HRESIMS (m/z 975.5563 [M + 2H]2+; calcd 975.5566). The 1H and 13C-NMR spectrum of 5 closely resembled those of 1 (Tables S7 and S8), with a molecular weight difference of 0.984 Da. A detailed analysis of the molecular formula revealed that 5 contains one additional oxygen atom and one fewer nitrogen and hydrogen atom compared to 1, indicating a substitution of one glutamine (Gln) residue to glutamic acid (Glu). The position of Glu substitution was determined by the MS/MS fragmentation (Figure 2).
In the full MS1 spectrum of 5, in-source fragmentation produced b12 (m/z 1195.6460) and y7 (m/z 755.4657) ion (Figure 2(A1)). Notably, the y7 ion of 5 was 0.984 Da higher than the corresponding y7 ion in 1 (m/z 754.4819), supporting the replacement of Gln with Glu. Further MS/MS analysis of the y7 ion revealed a Glu-containing y7/b5 ion at m/z 524.3025 (Figure 2(A2)), further validating the site of substitution. In addition, comprehensive NMR analysis, including COSY, TOCSY, and ROESY spectrum confirmed the amino acid sequence. With modified Marfey’s analysis (Figure S61) and ECD spectral analysis (Figure S59), the structure of compound 5 and was determined to be N-acetyl-L-Trp1-Gly2-L-A We appreciate your feedback. We have revised the figure labels accordingly.la3-Aib4-Aib5-L-Gln6-Aib7-Aib8-Aib9-L-Ser10-L-Leu11-Aib12-L-Pro13-L-Val14-Aib15-L-Ile16-L-Glu17-L-Gln18-L-Valol19 and named as bukhansantaibol E (5).
Compound 6 exhibited an m/z value of 956.0508 in the HRESIMS data, corresponding to the molecular formula of C89 H147N21O25 ([M + 2H]2+, calcd 956.0511). The 1H-NMR spectrum of 6 was similar to that of 5, except for differences observed in the aromatic proton region. In place of the characteristic indole signals of tryptophan, aromatic signals corresponding to a phenyl group (δH 7.38, 7.28, and 7.22) were observed, suggesting substitution of tryptophan with phenylalanine. (Table S9 and Figure S62). Moreover, a mass difference of 0.984 Da between compounds 3 and 6 indicated Glu substitution, mirroring the relationship observed between compounds 1 and 5. The MS/MS fragmentation analysis further confirmed the substitution of Glu at position 17 in 6 (Figure 2B). Comprehensive analysis of the COSY, TOCSY, and ROESY correlations established its amino acid connectivity. Furthermore, the HMBC correlations between the acetyl methyl protons (δH 2.09), the amide proton of phenylalanine (δH 9.60), and the acetyl carbonyl carbon (δC 172.3) confirm the presence of an N-terminal acetyl group attached to the phenylalanine residue. The absolute configurations of all amino acid residues, as well as the right-handed helical conformation of 6, were determined by modified Marfey’s analysis and the ECD spectral data, respectively (Figures S71 and S73). Based on these results, the structure of 6 was elucidated as N-acetyl-L-Phe1-Gly2-L-Ala3-Aib4-Aib5-L-Gln6-Aib7-Aib8-Aib9-L-Ser10-L-Leu11-Aib12-L-Pro13-L-Val14-Aib15-L-Ile16-L-Glu17-L-Gln18-L-Valol18 and named as bukhansantaibol F (6).
Compound 7 (Structure shown in Table 4) was determined to have a molecular formula of C81H130N20O21 based on the HRESIMS data (m/z 851.4886 [M + 2H – H2O]2+; calcd 851.4880). Comparison of the 1H and 13C-NMR spectra of 1 and 7 revealed the absence of characteristic signals corresponding to Valol residue in 7 (Table 5 and Table 6, and Figures S74 and S75). Furthermore, COSY correlation among δH 5.67 (CH)/4.75 (CH)/2.25 and 2.52 (CH2)/2.52 and 3.04 (CH2), along with HMBC correlation from δH 5.67 to amide carbonyl carbon (δC 171.0) suggested that the C-terminal Gln residue underwent intramolecular cyclization (Figure 3 and Figures S74–S80).
To the best of our knowledge, this is the first report of C-terminal cyclo-Glnol moiety (2-hydroxy-3-amino-6-piperidone) among peptaibol derivatives. Similar cyclization of C-terminal Asn or Gln residues has been observed during protein splicing in Pyrococcus abyssi, resulting in the formation of C-terminal aminosuccinimide or aminoglutarimide, respectively [15,16]. It could be proposed that this occurs via a nucleophilic attack by the γ-amide nitrogen on the adjacent carbonyl carbon of the peptide bond. A subsequent reduction step may then lead to the formation of the unique cyclic structure observed at the C-terminus of compound 7. The absolute configurations of the amino acid residues and the right-handed helical conformation were confirmed by modified Marfey’s analysis and ECD spectrum, respectively (Figures S83 and S85). Based on the L-configuration of Gln17, the configuration of hydroxy group was determined through analysis of the coupling constant. In the MM2-minimized models, the two possible configurations, (S,S) and (S,R) exhibited the dihedral angles of 52.7° and −69.2°, respectively, between the α-proton and β’-proton (Figure 4). Given that the measured J value of the triplet methine proton at δH 5.67 was 3.6 Hz, the smaller dihedral angle associated with (S,S) configuration is more consistent with the observed data, according to the Karplus equation [17]. Based on these results, the structure of 7 was established as N-acetyl-L-Trp1-Gly2-L-Ala3-Aib4-Aib5-L-Gln6-Aib7-Aib8-Aib9-L-Ser10-L-Leu11-Aib12-L-Pro13-L-Val14-Aib15-L-Ile16-L-cycGlnol17 and named as bukhansantaibol G (7).
Compound 8 showed the identical molecular formular with 7, as determined by the HRESIMS (m/z 851.4886 [M + 2H – H2O]2+; calcd 851.4880). The 1H and 13C-NMR spectra were highly similar to those of 7, and analysis of the 2D NMR spectra confirmed that 7 and 8 shared the same planar structure. However, subtle differences in the chemical shifts of the C-terminal cyclo-Glnol residue suggested that 8 is a diastereomer of 7; δH 9.14 in 8 vs. 8.80 in 7; δC 75.8/δH 5.45 in 8 vs. δC 78.9/δH 5.67 in 7; δC 21.7/δH 1.96, 2.73 in 8 vs. δC 22.7/δH 2.25, 2.52 in 7; δC 30.9/δH 2.53, 2.59 in 8 vs. δC 28.9/δH 2.52, 3.04 in 7. Notably, the coupling constant 2.5 Hz between the α-proton and β’-proton in 8 was smaller than that observed in 7 (3.6 Hz). Based on the dihedral angle derived from the previously mentioned MM2-minimized model (Figure 4) and interpretation of the Karplus equation, this difference supported the assignment of an (S,R)-configuration for 8. The absolute configurations of amino acid residues were confirmed by modified Marfey’s analysis (Figure S97). In addition, ECD spectrum revealed the right-handed helical conformation (Figure S95). Accordingly, the compound was named as bukhansantaibol H (8).
Compounds 9 and 10 were assigned the molecular formulas C82H132N20O21 and C80H131N19O21, respectively, based on the HRESIMS (Table 4). The 1H-NMR, COSY, and TOCSY spectra of 9 and 10 revealed similar cyclic-Glnol moiety at the C-terminal with 7 (Tables S13–S16). Additionally, a methoxy singlet (δH 3.29, 3H, s) was observed in 9 and 10 (Figures S89 and S100). Compound 9 exhibited indole proton signals characteristic of tryptophan (δH 11.96, 7.41, 7.83, 7.18, 7.28, 7.55; δC 124.2, 110.2, 128.1, 118.7, 119.1, 121.8, 111.9, 137.4), while compound 10 showed aromatic proton signals consistent with a phenyl ring (δH 7.30, 7.26, 7.27; δC 137.5, 129.3, 128.6, 126.9), indicating substitution of tryptophan with phenylalanine. Combined with the result of modified Marfey’s analysis (Figures S109 and S121), the structure of compounds 9 and 10 elucidated as N-acetyl-L-Trp1-Gly2-L-Ala3-Aib4-Aib5-L-Gln6-Aib7-Aib8-Aib9-L-Ser10-L-Leu11-Aib12-L-Pro13-L-Val14-Aib15-L-Ile16-L-cycGlnol17-Me (9) and N-acetyl-L-Phe1-Gly2-L-Ala3-Aib4-Aib5-L-Gln6-Aib7-Aib8-Aib9-L-Ser10-L-Leu11-Aib12-L-Pro13-L-Val14-Aib15-L-Ile16-L-cycGlnol17-Me (10). In addition, compounds 9 and 10 found to have a right-handed helical conformation based on ECD data (Figures S107 and S119). These compounds are assigned to trivial name as bukhansantaibol I (9) and bukhansantaibol J (10).
Compounds 11 and 12 (Structure shown in Table 7) were both assigned the molecular formular of C50H82N10O12 based on HRESIMS (m/z 1015.6174 [M + H]+; calcd 1015.6186). The 1H-NMR spectrum of 11 displayed characteristic signals including one aldehyde proton (δH 9.90), ten amide protons (δH 8.04–9.56), two aromatic protons (δH 7.48 and 7.17), four α-protons (δH 4.21–4.57), and eighteen methyl protons (δH 0.78–2.06) (Table 8). The TOCSY correlation enabled the identification of spin systems from amide proton to side chain protons for most amino acid residues, except Aib. Sequential connectivity of the amino acids was further elucidated through the ROESY correlations between amide protons (Figure 5). The HMBC correlation between an amide proton (δH 9.56), two singlet methyl groups (δH 1.63, 1.73) and the corresponding α-carbon (δC 56.7), together with the correlations between the same amide proton (δH 9.56), the acetyl methyl proton (δH 2.06), and the acetyl carbonyl carbons (δC 171.7) confirmed the presence of N-terminal acetylated Aib residue. Additional Aib residues were similarly assigned by the HMBC data. Furthermore, HMBC correlations from the aldehyde proton (δH 9.90) and two singlet CH3H 1.59 and 1.66) to α-carbon (δC 59.2) supported the presence of aldehyde moiety of C-terminal Aib residue (Aibal, 2-amino-2-methylpropanal). Based on the etymology of peptaibol, we propose the term ‘peptaibal’ as a new class name for this sequence, which terminates with an aldehyde group instead of an alcohol at the C-terminus. Compound 12 exhibited similar 1D and 2D-NMR spectra with 11, with the primary difference being the substitution of the Ile6 in 11 with Leu6 in 12. ECD spectral analysis revealed that both compounds have a right-handed helical conformation (Figures S131 and S143). Along with the result of modified Marfey’s analysis (Figures S133 and S145), the structures of 11 and 12 were determined as N-acetyl-Aib1-L-Ile2-Aib3-L-Tyr4-Aib5-L-Leu6-Aib7-L-Ala8-Aib9-Aibal10 and N-acetyl-Aib1-L-Ile2-Aib3-L-Tyr4-Aib5-L-Ile6-Aib7-L-Ala8-Aib9-Aibal10, respectively, and named as bukhansantaibal A (11) and bukhansantaibal B (12).
These peptaibals 11 and 12 are presumed to represent intermediates formed during the biosynthetic conversion of a carboxylic acid to an alcohol in peptaibol biosynthesis. The assembly of peptaibol is mediated by NRPS multi-modular enzyme, which iteratively condenses amino acid onto a peptide carrier protein module (PCP)-tethered amino acyl intermediate. Upon completion of chain elongation, the thioesterase domain (TE) typically catalyzes the release of the mature peptide [2]. A reductase domain (thioreductase, TR), located adjacent to the PCP or TE domains, enables the release of the peptide as either an aldehyde or an alcohol [18,19]. Alcohol formation involves a two-step reduction process catalyzed by the TR domain with NADPH as a cofactor, necessitating the reintroduction of an aldehyde intermediate for the second reduction. In certain NRPS systems, structural variations allow only the initial two-electron reduction step to occur, resulting in the predominant formation of aldehyde products [20,21]. While most peptaibol are reduced to alcohol, the isolation of peptaibols bearing C-terminal aldehydes is particularly noteworthy. Further biochemical characterization of the associated enzymatic machinery may elucidate the mechanism underlying aldehyde formation in these systems.
All compounds were evaluated for their inhibitory effects against HCT-8 (colon cancer) and SK-OV-3 (ovarian cancer) cell lines (Table 9). Among them, compounds 15 exhibited notable cytotoxicity, with IC50 values ranging from 2.1 to 19.6 μM. In particular, compound 1, a 19-residue peptaibol, exhibited potent activity against both HCT-8 and SK-OV-3 cells, with IC50 values of 2.1 and 3.4 μM, respectively. Compound 5, which differ from compound 1 by substitution of one Gln at position 17, showed comparable cytotoxicity, with IC50 values of 2.6 and 3.5 μM against HCT-8 and SK-OV-3 cells, respectively. In contrast, substitution of the C-terminal Valol with a cyclic Glnol moiety, as seen in compounds 710, resulted in a marked loss of cytotoxicity. The importance of the C-terminal Valol group was further supported by the inactivity of compounds 11 and 12, which bear a C-terminal aldehyde instead of amino alcohol.
In conclusion, twelve previously undescribed peptidic compounds were isolated from the culture extract of Trichoderma atroviride, obtained from soil samples through LC-MS and bioactivity-guided purification. Notably, compounds 710 and 1112 were characterized by the presence of a unique C-terminal cyclic Glnol moiety and aldehyde group, respectively. Given their structural diversity and potent cytotoxicity against cancer cell lines, peptaibols from Trichoderma species, including the strain examined in this study, represent a promising source for the discovery of novel anticancer drug leads.

3. Materials and Methods

3.1. General Experimental Procedures

Optical rotation was detected using a JASCO DIP-1000 polarimeter. The optical densities (O.D) based on the UV spectra were measured using a JASCO UV-550 spectrophotometer (JASCO, Tokyo, Japan). Electronic circular dichroism (ECD) spectra were recorded on a ChirascanVX spectrometer (Applied Photophysics Ltd., Leatherhead, UK). Nuclear magnetic resonance (NMR) spectra were recorded on Bruker AVANCE 600, 800, and 900 MHz spectrometers (Bruker, Billerica, MA, USA). LC-MS/MS analysis was performed using a UHPLC-HR-Orbitrap mass spectrometer (Thermo Fisher Scientific, Waltham, MA, USA) system equipped with a diode array detector and an YMC-Triart C18 column (2.0 μm, 100 × 2.1 mm, i.d., flow rate 0.3 mL/min, YMC Co., Kyoto, Japan). Column chromatography was performed using silica gel (230–400 mesh, Merck, Darmstadt, Germany) and HP20ss gel (Mitsubishi Chemical, Tokyo, Japan). The preparative HPLC was performed using Waters HPLC system equipped with pumps, a 996 photodiode-array detector (Waters Corporation, Milford, MA, USA), and a Luna 5 μm C18 column (100 Å, 250 × 21.2 mm I.D., Phenomenex, Torrance, CA, USA) with a flow rate of 10 mL/min. The semi-preparative HPLC were conducted on the same Waters HPLC system using a Luna 5 μm C18 (100 Å, 250 × 10 mm I.D., Phenomenex, Torrance, CA, USA) and a Kinetex 5 μm F5 (100 Å, 250 × 10 mm I.D., Phenomenex, Torrance, CA, USA) with a flow rate of 4 mL/min. All solvents used were of ACS grade or better.

3.2. Fungal Material

The Trichoderma atroviride isolate (soil collection from the territory of Mountain Bukhansan; Deposit No.: BHM16-2) was obtained from a soil sample collected near Insubong Peak in the area of Bukhansan Mountain, South Korea (37.6597281, 126.9845630) in February 2023. The fungi were identified based on the ribosomal internal transcribed spacer (ITS) region (Macrogen, Korea). The resulting sequence data were compared to fungal sequences contained in GenBank, which revealed 100% identity matches to isolates described as Trichoderma atroviride (GenBank accession no. KJ786757.1). The sequence data were deposited in GenBank (Trichoderma atroviride: GenBank accession no. PV809826).

3.3. Fermentation

To carry out large-scale cultivation for the isolation and purification of the bioactive constituents, the fungi were recovered from cryogenic storage (stored in a vial at −80 °C as mycelium with 20% aqueous glycerol). After recovery on Rose Bengal medium plates (15 g of agar, 10 g of malt extract, 1 g of yeast, 0.05 g of chloramphenicol, 0.025 g Rose Bengal, 1 L of DI H2O), fungal mycelia were aseptically cut into small pieces (~1 cm2) to prepare the inoculum for large-scale fermentation. The fermentation was performed in 1 L flask containing bilayered Cheerios breakfast cereal as the cultivation medium, supplemented with a 0.3% sucrose solution and 0.005% chloramphenicol. Three mycelial fragments were aseptically inoculated onto the surface of Cheerios cereal solid medium in each of ten 1L flasks. The cultures were incubated at room temperature for 3 weeks.

3.4. Extraction and Isolation of Compounds 112

Cultured fungi were extracted with EtOAc (0.5 L × 3) for 12 h at room temperature. The extract was filtered and evaporated under reduced pressure to obtain the EtOAc soluble residue, fraction A (3 g). Fraction A was subjected to silica gel vacuum liquid column chromatography (VLC), eluted sequentially with dichloromethane (100%, fraction B), dichloromethane-MeOH (9:1, fraction C), and MeOH (100%, fraction D). Fraction C (1.5 g) was separated using HP20ss gel VLC, eluted sequentially with aqueous MeOH (30% MeOH for fraction E, 50% MeOH for fraction F, 70% MeOH for fraction G, 90% MeOH for fraction H, and 100% MeOH for fraction I), and dichloromethane (CH2Cl2)-MeOH (1:1, fraction J). Fraction D (1.0 g) was also subjected to the same procedure using HP20ss gel VLC, yielding fractions K (30% MeOH), L (50% MeOH), M (70% MeOH), N (90% MeOH), O (100% MeOH), and P (CH2Cl2/MeOH 1:1).
Fraction H (244 mg) was fractionated by semi-preparative HPLC (C18, isocratic 60% MeOH in H2O, flow rate of 4 mL/min) to obtain 13 subfractions (H-1~H-13). Compound 11 (2.3 mg, tR = 12.4 min) was purified from subfraction H-9 (4.4 mg) by semi-preparative HPLC using C18 (isocratic 65% ACN in H2O, flow rate of 4 mL/min). Compound 12 (3.1 mg, tR = 14.0 min) was obtained from subfraction H-13 (8.7 mg) via semi-preparative HPLC (C18, isocratic 60% ACN in H2O, flow rate of 4 mL/min).
Since fractions N (179 mg) and O (106 mg) shared most of metabolites, as observed in their HPLC chromatograms, they were combined and subsequently subjected to further separation (fraction NO). Fraction NO (285 mg) was subjected to semi-preparative HPLC (C18, isocratic 55% MeOH in H2O with 0.1% formic acid, flow rate of 4 mL/min) to obtain 13 subfractions (NO-1~NO-13). Subfraction NO-1 (10.2 mg) was further purified by semi-preparative HPLC (F5, isocratic 40% ACN in H2O, flow rate of 4 mL/min) to give compounds 10 (1.6 mg, tR = 12.9 min) and 9 (2.0 mg, tR = 14.8 min). Subfraction NO-2 (4.9 mg) was separated by semi-preparative HPLC (F5, isocratic 35% ACN in H2O, flow rate of 4 mL/min), yielding six subfractions (NO-2-1~NO-2-6). Compound 7 (1.2 mg, tR = 23.2 min) was purified from subfraction NO-2-4 (1.6 mg) by semi-preparative HPLC (C18, isocratic 45% ACN in H2O, flow rate of 4 mL/min), and compound 8 (1.3 mg, tR = 18.9 min) was purified from subfraction NO-2-5 (1.5 mg) by semi-preparative HPLC (C18, isocratic 45% ACN in H2O, flow rate of 4 mL/min). Subfraction NO-4 (27.2 mg) was subjected to semi-preparative HPLC (C18, isocratic 50% ACN in H2O, flow rate of 4 mL/min), giving compound 2 (3.4 mg, tR = 18.2 min). Compound 1 (6.0 mg, tR = 19.3 min) was purified from subfraction NO-5 (30.3 mg) by semi-preparative HPLC (F5, isocratic 37% ACN in H2O, flow rate of 4 mL/min). Subfraction NO-6 (17.4 mg) was separated using semi-preparative HPLC (F5, isocratic 35% ACN in H2O, flow rate of 4 mL/min) to yield compounds 3 (5.0 mg, tR = 61.4 min) and 4 (1.4 mg, tR = 95.2 min). Compound 5 (28.9 mg, tR = 23.7 min) was purified from subfraction NO-7 (37.0 mg) by semi-preparative HPLC (C18, isocratic 52% ACN in H2O with 0.1% formic acid, flow rate of 4 mL/min), and compound 6 (16.0 mg, tR = 23.1 min) was purified from subfraction NO-8 (22.1 mg) by semi-preparative HPLC (C18, isocratic 52% ACN in H2O with 0.1% formic acid, flow rate of 4 mL/min).
Bukhansantaibol A (1): white amorphous powder; [α]25D −6.8 (c 0.05, MeOH); UV (c 0.05, MeOH) λmax (log ε) 202 (4.67), 219 (4.52), 280 (3.65) nm; ECD (c 0.5, CH3CN) λmax (Δε) 208 (−67.9), 221 (−48.1); 1H-NMR (600 MHz, pyridine-d5) and 13C-NMR (150 MHz, pyridine-d5), see Table 2 and Table 3; HRESIMS m/z 975.0645 [M + 2H]2+ (calcd for C91H151N23O24, 975.0646).
Bukhansantaibol B (2): white amorphous powder; [α]25D −6.7 (c 0.05, MeOH); UV (c 0.05, MeOH) λmax (log ε) 201 (4.54), 220 (4.37), 280 (3.48) nm; ECD (c 0.3, CH3CN) λmax (Δε) 207 (−32.6), 221 (−22.1); 1H-NMR (600 MHz, pyridine-d5) and 13C-NMR (150 MHz, pyridine-d5), see Tables S1 and S2; HRESIMS m/z 975.0643 [M + 2H]2+ (calcd for C91H151N23O24, 975.0646).
Bukhansantaibol C (3): white amorphous powder; [α]25D −7.4 (c 0.10, MeOH); UV (c 0.10, MeOH) λmax (log ε) 201 (4.46) nm; ECD (c 0.5, CH3CN) λmax (Δε) 207 (−39.5), 223 (−27.8); 1H-NMR (600 MHz, pyridine-d5) and 13C-NMR (150 MHz, pyridine-d5), see Tables S3 and S4; HRESIMS m/z 955.5593 [M + 2H]2+ (calcd for C89H150N22O24, 955.5591).
Bukhansantaibol D (4): white amorphous powder; [α]25D −7.5 (c 0.05, MeOH); UV (c 0.05, MeOH) λmax (log ε) 200 (4.46), 219 (4.19), 280 (3.33) nm; ECD (c 0.5, CH3CN) λmax (Δε) 208 (−25.5), 224 (−16.8); 1H-NMR (800 MHz, pyridine-d5) and 13C-NMR (200 MHz, pyridine-d5), see Tables S5 and S6; HRESIMS m/z 967.0672 [M + 2H]2+ (calcd for C91H151N23O23, 967.0671).
Bukhansantaibol E (5): white amorphous powder; [α]25D −7.5 (c 0.10, MeOH); UV (c 0.10, MeOH) λmax (log ε) 204 (4.45), 219 (4.33), 281 (3.57) nm; ECD (c 0.6, CH3CN) λmax (Δε) 208 (−24.6), 220 (−17.0); 1H-NMR (600 MHz, pyridine-d5) and 13C-NMR (150 MHz, pyridine-d5), see Tables S7 and S8; HRESIMS m/z 975.5563 [M + 2H]2+ (calcd for C91H150N22O25, 975.5566).
Bukhansantaibol F (6): white amorphous powder; [α]25D −10.3 (c 0.10, MeOH); UV (c 0.10, MeOH) λmax (log ε) 201 (4.57), 256 (3.54) nm; ECD (c 0.6, CH3CN) λmax (Δε) 208 (−42.7), 222 (−30.9); 1H-NMR (600 MHz, pyridine-d5) and 13C-NMR (150 MHz, pyridine-d5), see Tables S9 and S10; HRESIMS m/z 956.0508 [M + 2H]2+ (calcd for C89H149N21O25, 956.0511).
Bukhansantaibol G (7): white amorphous powder; [α]25D −6.7 (c 0.12, MeOH); UV (c 0.12, MeOH) λmax (log ε) 200 (4.06), 219 (3.81), 280 (2.84) nm; ECD (c 0.3, CH3CN) λmax (Δε) (Δε) 207 (−28.2), 224 (−19.0); 1H-NMR (900 MHz, pyridine-d5) and 13C-NMR (225 MHz, pyridine-d5), see Table 5 and Table 6; HRESIMS m/z 851.4886 [M + 2H − H2O]2+ (calcd for C81H130N20O20, 851.4880).
Bukhansantaibol H (8): white amorphous powder; [α]25D −3.8 (c 0.12, MeOH); UV (c 0.12, MeOH) λmax (log ε) 201 (4.27), 219 (4.01), 280 (3.18) nm; ECD (c 0.6, CH3CN) λmax (Δε) 209 (−22.8), 223 (−17.0); 1H-NMR (800 MHz, pyridine-d5) and 13C-NMR (200 MHz, pyridine-d5), see Tables S11 and S12; HRESIMS m/z 851.4886 [M + 2H − H2O]2+ (calcd for C81H130N20O20, 851.4880).
Bukhansantaibol I (9): white amorphous powder; [α]25D +2.0 (c 0.06, MeOH); UV (c 0.06, MeOH) λmax (log ε) 200 (4.40), 219 (4.11), 280 (3.35) nm; ECD (c 0.6, CH3CN) λmax (Δε) 207 (−34.0), 223 (−22.1); 1H-NMR (800 MHz, pyridine-d5) and 13C-NMR (200 MHz, pyridine-d5), see Tables S13 and S14; HRESIMS m/z 1733.9958 [M + H]+ (calcd for C82H133N20O21, 1733.9949).
Bukhansantaibol J (10): white amorphous powder; [α]25D +3.0 (c 0.06, MeOH); UV (c 0.10, MeOH) λmax (log ε) 200 (4.48) nm; ECD (c 0.6, CH3CN) λmax (Δε) 207 (−22.6), 226 (−14.3); 1H-NMR (900 MHz, pyridine-d5) and 13C-NMR (225 MHz, pyridine-d5), see Tables S15 and S16; HRESIMS m/z 1694.9852 [M + H]+ (calcd for C80H132N19O21, 1694.9840).
Bukhansantaibal A (11): white amorphous powder; [α]25D +4.6 (c 0.10, MeOH); UV (c 0.10, MeOH) λmax (log ε) 200 (4.21), 224 (3.71), 277 (2.71) nm; ECD (c 0.5, CH3CN) λmax (Δε) 210 (−20.4), 221 (−18.1); 1H-NMR (600 MHz, pyridine-d5) and 13C-NMR (150 MHz, pyridine-d5), see Table 8; HRESIMS m/z 1015.6174 [M + H]+ (calcd for C50H83N10O12, 1015.6186).
Bukhansantaibal B (12): white amorphous powder; [α]25D +4.4 (c 0.10, MeOH); UV (c 0.10, MeOH) λmax (log ε) 203 (4.40), 224 (4.01), 278 (3.09) nm; ECD (c 1.0, CH3CN) λmax (Δε) 211 (−20.9), 221 (−17.7); 1H-NMR (600 MHz, pyridine-d5) and 13C-NMR (150 MHz, pyridine-d5), see Table S17; HRESIMS m/z 1015.6174 [M + H]+ (calcd for C50H83N10O12, 1015.6186).

3.5. Absolute Configuration of Amino Acids in 112 Using Marfey’s Method

Compounds 112 (each 0.2 mg) were hydrolyzed at 110 °C for 24 h with 400 μL of 6 N HCl containing 1% 2-mercaptoethanol (2-ME) [22]. After cooling, the hydrolysates were evaporated to dryness under reduced pressure at room temperature. The dried residues were then dissolved in H2O (100 μL) and 1 M NaHCO3 (30 μL). 100 μL of 1% solution of N-α-(2,4-dinitro-5-fluorophenyl)-D/L-leucinamide (D/L-FDLA, Marfey’s reagent, Sigma, St. Louis, MO, USA) in acetone was added to each vial and incubated at 45 °C for 1 h. The mixture was neutralized with 1 N HCl (30 μL) and diluted with ACN (740 μL) before filtering with a PTFE filter (0.22 μm). LC/MS analysis (YMC-Triart C18 column, 2.0 μm, 100 × 2.1 mm, i.d.) of the DLA derivatives was performed using a gradient system consisting of solvent A (H2O with 0.1% formic acid) and solvent B (ACN with 0.1% formic acid). The gradient was programmed from 90: 10 to 40: 60 (A: B) over 34 min at a flow rate of 0.3 mL/min. The injection volume was 2 μL, and the column oven temperature was maintained at 40 °C. The retention times (min) of the L and D-DLA derivatives obtained from hydrolysis were as follows: 18.43 (L-Ser-L-DLA), 19.69 (L-Glu-L-DLA), 21.26 (L-Ala-L-DLA), 21.31 (L-Pro-L-DLA), 23.94 (L-Val-L-DLA), 24.28 (L-Valol-L-DLA), 25.83 (L-Ile-L-DLA), 26.03 (L-Leu-L-DLA), 26.05 (L-Trp-L-DLA), 26.35 (L-Phe-L-DLA), 19.02 (L-Ser-D-DLA), 20.67 (L-Glu-D-DLA), 23.18 (L-Pro-D-DLA), 23.89 (L-Ala-D-DLA), 28.26 (L-Val-D-DLA), 28.38 (L-Trp-D-DLA), 28.51 (L-Valol-D-DLA), 29.72 (L-Phe-D-DLA), 30.52 (L-Ile-D-DLA), and 30.72 (L-Leu-D-DLA). The L-DLA or D-DLA derivatives of authentic amino acid standards of L-Ile and L-allo-Ile were subjected to LC-MS analysis under the same condition. The retention times of the derivatives were 25.84 (L-Ile-L-DLA) and 25.71 (L-allo-Ile-L-DLA), respectively (Figure S146).

3.6. Cell Culture

HCT-8 (colorectal carcinoma), and SK-OV-3 (ovarian cancer) cell lines were obtained from the American Type Culture Collection (ATCC; Manassas, VA, USA). The cells were cultured in RPMI-1640 medium (Cytiva, Marlborough, MA, USA) supplemented with 10% fetal bovine serum (FBS), 100 U/mL penicillin, and streptomycin, and incubated in a humidified atmosphere with 5% CO2 at 37 °C [23].

3.7. Cell Viability Assay

Cell viability was determined using the 3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide (MTT) colorimetric assay (Sigma Chemical Co., St. Louis, MO). Cells were seeded in 96-well plates and incubated at 37 °C for 24 h. Subsequently, cells were treated with isolated compounds at concentrations of 2, 20, and 100 μM for an additional 24 h. After treatment, 25 μL of MTT solution (5 mg/mL; Thermo Fisher Scientific, Waltham, MA, USA) was added to each well and incubated for 3 h. The resulting formazan crystals were dissolved in 100 μL of dimethyl sulfoxide, and the absorbance was measured at 550 nm using an ELx808 microplate reader (BioTek Instruments Inc., Winooski, VT, USA) [23].

4. Conclusions

Twelve new compounds, bukhansantaibols A–J (110) and bukhansantaibals A–B (1112), were isolated from the soil fungus Trichoderma atroviride collected from the area of Bukhansan Mountain. Among them, six were identified as typical peptaibols (16), while the remaining six were elucidated highly unusual peptaibol derivatives that have not been previously reported: four compounds (710) featured cyclized alcohol-containing amino acids at the C-terminal, and two metabolites (1112) possessed an aldehyde group at the C-terminal, which is considered an intermediate in the biosynthetic pathway of peptaibols. All isolated compounds were evaluated from their cytotoxicity against two human cancer cell, HCT-8 and SK-OV-3. As a result, the typical peptaibols exhibited greater cytotoxicity compared to the new class of molecules. Notably, compounds 1, 4, 5 showed IC50 values of below 10 μM against both cell lines. These results were thought to be associated with the membrane-permeabilizing properties of peptaibols, and suggest that, in addition to their cytotoxicity against cancer cells, these compounds may serve as promising leads for the development of antimicrobial and antiprotozoal agents.

Supplementary Materials

The following supporting information can be downloaded at: https://www.mdpi.com/article/10.3390/molecules30163422/s1, Figure S1. Isolation scheme for compounds 112 from BHM16-2-A. Figure S2. 1H NMR spectrum of compound 1 (Pyridine-d5, 600 MHz). Figure S3. 13C NMR spectrum of compound 1 (Pyridine-d5, 150 MHz). Figure S4. COSY spectrum of compound 1. Figure S5. TOCSY spectrum of compound 1. Figure S6. HSQC-DEPT spectrum of compound 1. Figure S7. HMBC spectrum of compound 1. Figure S8. ROESY spectrum of compound 1. Figure S9. Key ROESY, COSY/TOCSY, and HMBC correlations of compound 1. Figure S10. MS fragmentation analysis of compound 1. Figure S11. Experimental ECD spectrum of compound 1. Figure S12. HRESIMS spectrum of compound 1. Figure S13. Advanced Marfey’s analysis of compound 1. Figure S14. 1H NMR spectrum of compound 2 (Pyridine-d5, 600 MHz). Figure S15. 13C NMR spectrum of compound 2 (Pyridine-d5, 150 MHz). Figure S16. COSY spectrum of compound 2. Figure S17. TOCSY spectrum of compound 2. Figure S18. HSQC-DEPT spectrum of compound 2. Figure S19. HMBC spectrum of compound 2. Figure S20. ROESY spectrum of compound 2. Figure S21. Key ROESY, COSY/TOCSY, and HMBC correlations of compound 2. Figure S22. MS fragmentation analysis of compound 2. Figure S23. Experimental ECD spectrum of compound 2. Figure S24. HRESIMS spectrum of compound 2. Figure S25. Advanced Marfey’s analysis of compound 2. Figure S26. 1H NMR spectrum of compound 3 (Pyridine-d5, 600 MHz). Figure S27. 13C NMR spectrum of compound 3 (Pyridine-d5, 150 MHz). Figure S28. COSY spectrum of compound 3. Figure S29. TOCSY spectrum of compound 3. Figure S30. HSQC-DEPT spectrum of compound 3. Figure S31. HMBC spectrum of compound 3. Figure S32. ROESY spectrum of compound 3. Figure S33. Key ROESY, COSY/TOCSY, and HMBC correlations of compound 3. Figure S34. MS fragmentation analysis of compound 3. Figure S35. Experimental ECD spectrum of compound 3. Figure S36. HRESIMS spectrum of compound 3. Figure S37. Advanced Marfey’s analysis of compound 3. Figure S38. 1H NMR spectrum of compound 4 (Pyridine-d5, 800 MHz). Figure S39. 13C NMR spectrum of compound 4 (Pyridine-d5, 200 MHz). Figure S40. COSY spectrum of compound 4. Figure S41. TOCSY spectrum of compound 4. Figure S42. HSQC-DEPT spectrum of compound 4. Figure S43. HMBC spectrum of compound 4. Figure S44. ROESY spectrum of compound 4. Figure S45. Key ROESY, COSY/TOCSY, and HMBC correlations of compound 4. Figure S46. MS fragmentation analysis of compound 4. Figure S47. Experimental ECD spectrum of compound 4. Figure S48. HRESIMS spectrum of compound 4. Figure S49. Advanced Marfey’s analysis of compound 4. Figure S50. 1H NMR spectrum of compound 5 (Pyridine-d5, 600 MHz). Figure S51. 13C NMR spectrum of compound 5 (Pyridine-d5, 150 MHz). Figure S52. COSY spectrum of compound 5. Figure S53. TOCSY spectrum of compound 5. Figure S54. HSQC-DEPT spectrum of compound 5. Figure S55. HMBC spectrum of compound 5. Figure S56. ROESY spectrum of compound 5. Figure S57. Key ROESY, COSY/TOCSY, and HMBC correlations of compound 5. Figure S58. MS fragmentation analysis of compound 5. Figure S59. Experimental ECD spectrum of compound 5. Figure S60. HRESIMS spectrum of compound 5. Figure S61. Advanced Marfey’s analysis of compound 5. Figure S62. 1H NMR spectrum of compound 6 (Pyridine-d5, 600 MHz). Figure S63. 13C NMR spectrum of compound 6 (Pyridine-d5, 150 MHz). Figure S64. COSY spectrum of compound 6. Figure S65. TOCSY spectrum of compound 6. Figure S66. HSQC-DEPT spectrum of compound 6. Figure S67. HMBC spectrum of compound 6. Figure S68. ROESY spectrum of compound 6. Figure S69. Key ROESY, COSY/TOCSY, and HMBC correlations of compound 6. Figure S70. MS fragmentation analysis of compound 6. Figure S71. Experimental ECD spectrum of compound 6. Figure S72. HRESIMS spectrum of compound 6. Figure S73. Advanced Marfey’s analysis of compound 6. Figure S74. 1H NMR spectrum of compound 7 (Pyridine-d5, 900 MHz). Figure S75. 13C NMR spectrum of compound 7 (Pyridine-d5, 225 MHz). Figure S76. COSY spectrum of compound 7. Figure S77. TOCSY spectrum of compound 7. Figure S78. HSQC-DEPT spectrum of compound 7. Figure S79. HMBC spectrum of compound 7. Figure S80. NOESY spectrum of compound 7. Figure S81. Key ROESY, COSY/TOCSY, and HMBC correlations of compound 7. Figure S82. MS fragmentation analysis of compound 7. Figure S83. Experimental ECD spectrum of compound 7. Figure S84. HRESIMS spectrum of compound 7. Figure S85. Advanced Marfey’s analysis of compound 7. Figure S86. 1H-NMR spectrum of compound 8 (Pyridine-d5, 800 MHz). Figure S87. 13C-NMR spectrum of compound 8 (Pyridine-d5, 200 MHz). Figure S88. COSY spectrum of compound 8. Figure S89. TOCSY spectrum of compound 8. Figure S90. HSQC-DEPT spectrum of compound 8. Figure S91. HMBC spectrum of compound 8. Figure S92. ROESY spectrum of compound 8. Figure S93. Key ROESY, COSY/TOCSY, and HMBC correlations of compound 8. Figure S94. MS fragmentation analysis of compound 8. Figure S95. Experimental ECD spectrum of compound 8. Figure S96. HRESIMS spectrum of compound 8. Figure S97. Advanced Marfey’s analysis of compound 8. Figure S98. 1H-NMR spectrum of compound 9 (Pyridine-d5, 800 MHz). Figure S99. 13C-NMR spectrum of compound 9 (Pyridine-d5, 200 MHz). Figure S100. COSY spectrum of compound 9. Figure S101. TOCSY spectrum of compound 9. Figure S102. HSQC-DEPT spectrum of compound 9. Figure S103. HMBC spectrum of compound 9. Figure S104. ROESY spectrum of compound 9. Figure S105. Key ROESY, COSY/TOCSY, and HMBC correlations of compound 9. Figure S106. MS fragmentation analysis of compound 9. Figure S107. Experimental ECD spectrum of compound 9. Figure S108. HRESIMS spectrum of compound 9. Figure S109. Advanced Marfey’s analysis of compound 9. Figure S110. 1H-NMR spectrum of compound 10 (Pyridine-d5, 900 MHz). Figure S111. 13C-NMR spectrum of compound 10 (Pyridine-d5, 225 MHz). Figure S112. COSY spectrum of compound 10. Figure S113. TOCSY spectrum of compound 10. Figure S114. HSQC-DEPT spectrum of compound 10. Figure S115. HMBC spectrum of compound 10. Figure S116. ROESY spectrum of compound 10. Figure S117. Key ROESY, COSY/TOCSY, and HMBC correlations of compound 10. Figure S118. MS fragmentation analysis of compound 10. Figure S119. Experimental ECD spectrum of compound 10. Figure S120. HRESIMS spectrum of compound 10. Figure S121. Advanced Marfey’s analysis of compound 10. Figure S122. 1H-NMR spectrum of compound 11 (Pyridine-d5, 600 MHz). Figure S123. 13C-NMR spectrum of compound 11 (Pyridine-d5, 150 MHz). Figure S124. COSY spectrum of compound 11. Figure S125. TOCSY spectrum of compound 11. Figure S126. HSQC-DEPT spectrum of compound 11. Figure S127. HMBC spectrum of compound 11. Figure S128. ROESY spectrum of compound 11. Figure S129. Key ROESY, COSY/TOCSY, and HMBC correlations of compound 11. Figure S130. MS fragmentation analysis of compound 11. Figure S131. Experimental ECD spectrum of compound 11. Figure S132. HRESIMS spectrum of compound 11. Figure S133. Advanced Marfey’s analysis of compound 11. Figure S134. 1H-NMR spectrum of compound 12 (Pyridine-d5, 600 MHz). Figure S135. 13C-NMR spectrum of compound 12 (Pyridine-d5, 150 MHz). Figure S136. COSY spectrum of compound 12. Figure S137. TOCSY spectrum of compound 12. Figure S138. HSQC-DEPT spectrum of compound 12. Figure S139. HMBC spectrum of compound 12. Figure S140. ROESY spectrum of compound 12. Figure S141. Key ROESY, COSY/TOCSY, and HMBC correlations of compound 12. Figure S142. MS fragmentation analysis of compound 12. Figure S143. Experimental ECD spectrum of compound 12. Figure S144. HRESIMS spectrum of compound 12. Figure S145. Advanced Marfey’s analysis of compound 12. Figure S146. Advanced Marfey’s analysis for L-Ile identification. Table S1. 1H (600 MHz) data for compound 2 in pyridine-d5 (δ in ppm, J in Hz). Table S2. 13C NMR (150 MHz) data for compound 2 in pyridine-d5. Table S3. 1H (600 MHz) data for compound 3 in pyridine-d5 (δ in ppm, J in Hz). Table S4. 13C (150 MHz) data for compound 3 in pyridine-d5. Table S5. 1H (800 MHz) data for compound 4 in pyridine-d5 (δ in ppm, J in Hz). Table S6. 13C (200 MHz) data for compound 4 in pyridine-d5. Table S7. 1H (600 MHz) data for compound 5 in pyridine-d5 (δ in ppm, J in Hz). Table S8. 13C (150 MHz) data for compound 5 in pyridine-d5. Table S9. 1H (600 MHz) data for compound 6 in pyridine-d5 (δ in ppm, J in Hz). Table S10. 13C (150 MHz) data for compound 6 in pyridine-d5. Table S11. 1H (800 MHz) data for compound 8 in pyridine-d5 (δ in ppm, J in Hz). Table S12. 13C (200 MHz) data for compound 8 in pyridine-d5. Table S13. 1H (800 MHz) data for compound 9 in pyridine-d5 (δ in ppm, J in Hz). Table S14. 13C (200 MHz) data for compound 9 in pyridine-d5. Table S15. 1H (900 MHz) data for compound 10 in pyridine-d5 (δ in ppm, J in Hz). Table S16. 13C (225 MHz) data for compound 10 in pyridine-d5. Table S17. 1H (600 MHz) and 13C (150 MHz) data for compound 12 in pyridine-d5.

Author Contributions

Investigation, conceptualization, and writing, J.G.K.; investigation, formal analysis, and writing, J.S.H.; resources, D.L.; methodology and validation, M.K.L.; Supervision, conceptualization, writing—review and editing, and funding acquisition, B.Y.H. and J.W.L. All authors have read and agreed to the published version of the manuscript.

Funding

This research was supported by the National Research Foundation of Korea (NRF) (Grant No. NRF-2022R1F1A1075116, and RS-2025-02273102). This research was supported by the National Research Foundation of Korea (NRF) grant funded by the Korean government (MSIT) (RS-2024-00440614).

Institutional Review Board Statement

Not applicable.

Informed Consent Statement

Not applicable.

Data Availability Statement

All data are included in the article or Supplementary Materials.

Acknowledgments

The authors wish to thank the Korea Basic Science Institute for the NMR spectroscopic measurements.

Conflicts of Interest

The authors declare no conflicts of interest.

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Figure 1. Key ROESY, COSY/TOCSY, and HMBC correlations of compound 1.
Figure 1. Key ROESY, COSY/TOCSY, and HMBC correlations of compound 1.
Molecules 30 03422 g001
Figure 2. MS/MS analysis of compounds 5 (A) and 6 (B). (1) Full MS1 spectrum. (2) MS/MS spectrum of y7 ion. (3) MS/MS spectrum of b12 ion.
Figure 2. MS/MS analysis of compounds 5 (A) and 6 (B). (1) Full MS1 spectrum. (2) MS/MS spectrum of y7 ion. (3) MS/MS spectrum of b12 ion.
Molecules 30 03422 g002
Figure 3. Key ROESY, COSY/TOCSY, and HMBC correlations of compound 7.
Figure 3. Key ROESY, COSY/TOCSY, and HMBC correlations of compound 7.
Molecules 30 03422 g003
Figure 4. MM2-minimized model of 7 for (S,R) and (S,S) configuration.
Figure 4. MM2-minimized model of 7 for (S,R) and (S,S) configuration.
Molecules 30 03422 g004
Figure 5. Key ROESY, COSY/TOCSY, and HMBC correlations of compound 11.
Figure 5. Key ROESY, COSY/TOCSY, and HMBC correlations of compound 11.
Molecules 30 03422 g005
Table 1. Structure of compounds 16.
Table 1. Structure of compounds 16.
Molecules 30 03422 i001
CompoundMassR1R2R3R4
11948.1146L-TrpL-SerL-IleL-Gln
21948.1146L-TrpL-SerL-LeuL-Gln
31909.1037L-PheL-SerL-IleL-Gln
41932.1197L-TrpL-AlaL-IleL-Gln
51949.0986L-TrpL-SerL-IleL-Glu
61910.0877L-PheL-SerL-IleL-Glu
Table 2. 1H (600 MHz) data for compound 1 in pyridine-d5 (δ in ppm, J in Hz).
Table 2. 1H (600 MHz) data for compound 1 in pyridine-d5 (δ in ppm, J in Hz).
PositionδH PositionδH
AcCH32.07, sLeu11N-H8.19, m
Trp1N-H9.45, d (4.5) α4.93, m
α5.02, m β2.00, m; 2.23, m
β3.63, m; 3.70, m γ2.16, m
111.94, d (2.4) δ10.99, d (6.5)
27.49, d (2.4) δ20.98, d (6.5)
47.84, d (8.0)Aib12N-H8.53, s
57.19, m α-Me11.80, s
67.28, m α-Me21.74, s
77.56, mPro13α4.57, m
Gly2N-H9.93, t (5.6) β1.74, m; 2.16, m
α4.06, m; 4.17, m γ1.75, m; 1.97, m
Ala3N-H8.48, d (5.4) δ3.99, m; 4.07, m
α4.49, mVal14N-H8.04, m
β1.55, d (7.3) α4.07, m
Aib4N-H8.52, s β2.57, m
α-Me11.80, s γ11.20, d (6.5)
α-Me21.71, s γ21.14, d (6.5)
Aib5N-H8.27, sAib15N-H7.94, s
α-Me11.72, s α-Me11.80, s
α-Me21.71, s α-Me21.71, s
Gln6N-H8.31, d (4.7)Ile16N-H7.73, d (4.9)
α4.36, m α4.28, m
β2.69, m; 2.79, m β2.23, m
γ2.77, m; 2.89, m γ11.40, m
CONH27.74, s; 8.14, s γ21.07, d (6.7)
Aib7N-H8.43, s δ0.86, t (7.2)
α-Me11.75, sGln17N-H8.38, d (5.5)
α-Me21.70, s α4.69, m
Aib8N-H8.07, s β2.81, m; 2.88, m
α-Me11.81, s γ2.75, m; 2.97, m
α-Me21.74, s CONH27.60, s; 8.02, s
Aib9N-H8.39, sGln18N-H8.18, m
α-Me11.82, s α5.04, m
α-Me21.72, s β2.73, m; 3.00, m
Ser10N-H8.46, d (4.4) γ2.81, m; 2.97, m
α4.70, m CONH27.50, s; 8.10, s
β4.37, m; 4.52, mValol19N-H7.76, d (9.4)
α4.27, m
β2.38, m
γ11.19, d (6.8)
γ21.04, d (6.8)
β’4.04, m; 4.08, m
Table 3. 13C NMR (150 MHz) data for compound 1 in pyridine-d5.
Table 3. 13C NMR (150 MHz) data for compound 1 in pyridine-d5.
PositionδC PositionδC PositionδC
AcCH322.7Aib7C=O177.0Val14C=O174.0
C=O172.5 α56.7 α63.4
Trp1C=O175.0 α-Me126.9 β29.4
α57.1 α-Me223.7 γ119.2
β27.9Aib8C=O176.4 γ219.1
2124.3 α56.9Aib15C=O177.2
3110.3 α-Me126.9 α56.7
3a128.1 α-Me223.7 α-Me127.0
4118.7Aib9C=O177.7 α-Me222.7
5119.1 α56.8Ile16C=O174.3
6121.8 α-Me127.1 α61.6
7112.0 α-Me223.0 β35.9
7a137.4Ser10C=O171.5 γ126.5
Gly2C=O171.9 α60.4 γ215.7
α44.4 β62.0 δ11.1
Ala3C=O175.2Leu11C=O173.6Gln17C=O173.6
α52.4 α52.2 α56.3
β16.4 β40.2 β27.4
Aib4C=O175.8 γ24.7 γ32.8
α56.8 δ120.8 CONH2174.6
α-Me126.4 δ223.1Gln18C=O172.8
α-Me222.6Aib12C=O175.0 α55.5
Aib5C=O177.2 α56.9 β28.3
α56.5 α-Me123.3 γ32.9
α-Me126.9 α-Me227.1 CONH2174.6
α-Me222.7Pro13C=O175.0Valol19α57.3
Gln6C=O174.8 α64.0 β29.2
α57.4 β29.0 γ119.2
β27.2 γ26.3 γ219.9
γ32.5 δ49.3 β’63.0
CONH2174.5
Table 4. Structure of compounds 710.
Table 4. Structure of compounds 710.
Molecules 30 03422 i002
CompoundMassR1R2
71718.9719L-TrpOH (S)
81718.9719L-TrpOH (R)
91732.9876L-TrpOCH3 (S)
101693.9767L-PheOCH3 (S)
Table 5. 1H (900 MHz) data for compound 7 in pyridine-d5 (δ in ppm, J in Hz).
Table 5. 1H (900 MHz) data for compound 7 in pyridine-d5 (δ in ppm, J in Hz).
PositionδH PositionδH
AcCH32.02, sSer10N-H8.45, m
Trp1N-H9.44, d (4.6) α4.71, m
α5.02, m β4.37, m; 4.53, m
β3.62, m; 3.68, mLeu11N-H8.16, m
111.95, d (2.2) α5.01, m
27.41, d (2.2) β2.05, m; 2.23, m
47.82, d (8.0) γ2.14, m
57.18, m δ10.99, d (6.6)
67.28, m δ20.98, d (6.6)
77.54, mAib12N-H8.41, s
Gly2N-H9.99, m α-Me11.80, s
α4.04, m; 4.14, m α-Me21.78, s
Ala3N-H8.52, mPro13α4.61, m
α4.51, m β1.75, m; 2.21, m
β1.53, d (7.3) γ1.68, m; 1.91, m
Aib4N-H8.52, s δ3.96, m; 4.02, m
α-Me11.69, sVal14N-H8.28, d (6.0)
α-Me21.72, s α4.22, m
Aib5N-H8.23, s β2.61, m
α-Me11.69, s γ11.29, m
α-Me21.70, s γ21.19, m
Gln6N-H8.31, d (4.6)Aib15N-H7.94, s
α4.36, m α-Me11.83, s
β2.68, m; 2.77, m α-Me21.82, s
γ2.77, m; 2.87, mIle16N-H7.53, d (5.3)
CONH27.74, s; 8.14, s α4.98, m
Aib7N-H8.35, s β2.57, m
α-Me11.82, s γ11.61, m; 1.95 m
α-Me21.78, s γ21.13, d (6.8)
Aib8N-H8.06, s δ0.95, t (7.4)
α-Me11.80, scycGln17N-H8.19, d (7.5)
α-Me21.72, s α4.75, m
Aib9N-H8.39, s β2.25, m; 2.52, m
α-Me11.82, s γ2.52, m; 3.04, m
α-Me21.83, s β’5.67, t (3.6)
CONH8.80, d (3.6)
Table 6. 13C NMR (225 MHz) data for compound 7 in pyridine-d5.
Table 6. 13C NMR (225 MHz) data for compound 7 in pyridine-d5.
PositionδC PositionδC PositionδC
AcCH322.7Gln6C=O176.2Pro13C=O174.7
C=O172.4 α57.4 α63.9
Trp1C=O174.2 β27.0 β29.0
α57.0 γ32.6 γ26.3
β27.9 CONH2174.5 δ49.4
2124.0Aib7C=O176.9Val14C=O173.4
3110.3 α56.9 α62.7
3a128.1 α-Me126.9 β29.4
4118.7 α-Me223.2 γ119.8
5119.1Aib8C=O176.2 γ219.3
6121.8 α56.7Aib15C=O175.3
7111.9 α-Me126.8 α57.2
7a137.4 α-Me223.3 α-Me126.9
Gly2C=O174.8Aib9C=O177.6 α-Me223.1
α44.3 α57.2Ile16C=O172.2
Ala3C=O175.1 α-Me127.9 α58.9
α52.2 α-Me223.5 β36.7
β16.4Ser10C=O171.3 γ125.3
Aib4C=O176.7 α60.3 γ216.3
α56.5 β62.0 δ11.9
α-Me126.8Leu11C=O173.9cycGln17α50.4
α-Me223.2 α59.0 β22.7
Aib5C=O177.1 β40.3 γ28.9
α56.6 γ24.7 δ171.0
α-Me123.2 δ120.8 β’78.9
α-Me226.3 δ223.3
Aib12C=O174.5
α56.9
α-Me123.0
α-Me226.9
Table 7. Structure of compounds 1112.
Table 7. Structure of compounds 1112.
Molecules 30 03422 i003
CompoundMassRCompoundMassR
111014.6114L-Leu121014.6114L-Ile
Table 8. 1H (600 MHz) and 13C (150 MHz) data for compound 11 in pyridine-d5.
Table 8. 1H (600 MHz) and 13C (150 MHz) data for compound 11 in pyridine-d5.
PositionδCδH PositionδCδH
AcCH323.02.06, sLeu6N-H-8.13, d (6.4)
C=O171.7- C=O174.8-
Aib1N-H-9.56, s α55.84.49, m
C=O177.4- β39.81.96, m; 2.11, m
α56.7- γ24.82.11, m
α-Me126.51.63, s δ121.20.93, d (6.2)
α-Me224.21.73, s δ222.70.99, d (6.1)
Ile2N-H-8.93, d (4.0)Aib7N-H-8.24, s
C=O172.7- C=O176.2-
α61.44.21, m α56.7-
β35.41.98, m α-Me126.51.84, s
γ126.81.67, m α-Me223.41.85, s
γ215.61.02, d (6.8)Ala8N-H-8.18, m
δ11.10.78, t (7.4) C=O173.4-
Aib3N-H-8.29, s α52.44.52, m
C=O177.1- α-Me116.91.74, d (2.1)
α56.7-Aib9N-H-8.12, s
α-Me126.81.72, s C=O176.1-
α-Me223.01.75, s α56.7-
Tyr4N-H-8.04, d (6.0) α-Me126.81.96, s
C=O173.6- α-Me224.41.97, s
α59.44.60, mAibal10N-H-8.06, s
β36.73.54, m; 3.53, m HC=O201.89.90, s
γ127.9- α59.2
δ130.57.48, d (6.0) α-Me121.61.66, s
ε116.17.17, m α-Me221.71.59, s
ζ157.4-
Aib5N-H 8.35, s
C=O176.9-
α56.6-
α-Me126.61.84, s
α-Me223.21.78, s
Table 9. IC50 values (μM) of compounds 112 against HCT-8 and SK-OV-3 cancer cells a.
Table 9. IC50 values (μM) of compounds 112 against HCT-8 and SK-OV-3 cancer cells a.
No.HCT-8 (Colon Cancer)SK-OV-3 (Ovarian Cancer)
12.1 ± 0.23.4 ± 0.2
211.7 ± 0.813.8 ± 1.0
318.5 ± 0.619.6 ± 0.1
47.7 ± 0.35.7 ± 0.04
52.6 ± 1.03.5 ± 0.2
6>50>50
7>50>50
8>50>50
9>50>50
10>50>50
11>50>50
12>50>50
Etoposide b33.7 ± 1.537.3 ± 1.8
a Results are presented as mean ± standard deviation from triplicate experiments. b Etoposide was used as positive control.
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Kim, J.G.; Han, J.S.; Lee, D.; Lee, M.K.; Hwang, B.Y.; Lee, J.W. Cytotoxic Peptidic Metabolites Isolated from the Soil-Derived Fungus Trichoderma atroviride. Molecules 2025, 30, 3422. https://doi.org/10.3390/molecules30163422

AMA Style

Kim JG, Han JS, Lee D, Lee MK, Hwang BY, Lee JW. Cytotoxic Peptidic Metabolites Isolated from the Soil-Derived Fungus Trichoderma atroviride. Molecules. 2025; 30(16):3422. https://doi.org/10.3390/molecules30163422

Chicago/Turabian Style

Kim, Jun Gu, Jae Sang Han, Dahyeon Lee, Mi Kyeong Lee, Bang Yeon Hwang, and Jin Woo Lee. 2025. "Cytotoxic Peptidic Metabolites Isolated from the Soil-Derived Fungus Trichoderma atroviride" Molecules 30, no. 16: 3422. https://doi.org/10.3390/molecules30163422

APA Style

Kim, J. G., Han, J. S., Lee, D., Lee, M. K., Hwang, B. Y., & Lee, J. W. (2025). Cytotoxic Peptidic Metabolites Isolated from the Soil-Derived Fungus Trichoderma atroviride. Molecules, 30(16), 3422. https://doi.org/10.3390/molecules30163422

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