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Article

Structure–Activity Relationship Studies of Tetracyclic Pyrrolocarbazoles Inhibiting Heterotetrameric Protein Kinase CK2

1
Institut für Pharmazeutische und Medizinische Chemie, Universität Münster, Corrensstraße 48, D-48149 Münster, Germany
2
Institutes I & II of Pharmacology, Center of Pharmacology, Faculty of Medicine and University Hospital Cologne, University of Cologne, Gleueler Straße 24, D-50931 Cologne, Germany
3
Faculty of Applied Natural Sciences, TH Köln-University of Applied Sciences, Campus Leverkusen, Campusplatz 1, D-51379 Leverkusen, Germany
*
Author to whom correspondence should be addressed.
Molecules 2025, 30(1), 63; https://doi.org/10.3390/molecules30010063
Submission received: 22 November 2024 / Revised: 19 December 2024 / Accepted: 23 December 2024 / Published: 27 December 2024
(This article belongs to the Special Issue Heterocycles in Medicinal Chemistry III)

Abstract

:
The serine/threonine kinase CK2 (formerly known as casein kinase II) plays a crucial role in various CNS disorders and is highly expressed in various types of cancer. Therefore, inhibiting this key kinase could be promising for the treatment of these diseases. The CK2 holoenzyme is formed by the recruitment of two catalytically active CK2α and/or CK2α′ subunits by a regulatory CK2β dimer. Starting with the lead furocarbazole W16 (4) inhibiting the CK2α/CK2β interaction, analogous pyrrolocarbazoles were prepared and tested for their protein–protein interaction inhibition (PPII). The key step of the synthesis was a multicomponent Levy reaction of 2-(indolyl)acetate 6, benzaldehydes 7, and N-substituted maleimides 8. Targeted modifications were performed by the saponification of the tetracyclic ester 9a, followed by the coupling of the resulting acid 10 with diverse amines. The replacement of the O-atom of the lead furocarbazole 4 by an N-atom in pyrrolocarbazoles retained or even increased the inhibition of the CK2α/CK2β interaction. The large benzyloxazolidinyl moiety of 4 could be replaced by smaller N-substituents without the loss of the PPII. The introduction of larger substituents at the 2-position and/or at p-position of the phenyl moiety at the 10-position to increase the surface for the inhibition of the PPI did not enhance the inhibition of the CK2α/CK2β association. The strong inhibition of the CK2α/CK2β association by the histidine derivative (+)-20a (Ki = 6.1 µM) translated into a high inhibition of the kinase activity of the CK2 holoenzyme (CK2α2β2, IC50 = 2.5 µM). Thus, 20a represents a novel lead compound inhibiting CK2 via the inhibition of the association of the CK2α and Ck2β subunits.

Graphical Abstract

1. Introduction

Human serine/threonine kinase CK2 (formerly known as casein kinase II) was identified 70 years ago as the first enzyme able to phosphorylate proteins [1]. The constitutively active CK2 can transfer phosphate moieties from ATP or GTP to more than 500 target proteins [2,3,4]. Due to its broad substrate scope, it is involved in several physiological and pathophysiological processes, including the regulation of the cell cycle, cell movement, cell proliferation, apoptosis, and CNS activity [3,4,5,6,7,8].
The heterotetrameric CK2 holoenzyme is formed by the recruitment of two CK2α and/or CK2α′ subunits to a CK2β dimer [9]. The catalytically active CK2α (CK2α′) subunits contain an ATP binding site each and are responsible for phosphate transfer to the target proteins [9]. The regulatory CK2β subunits stabilize the heterotetrameric holoenzyme and modulate its reactivity and substrate selectivity [9,10,11]. However, the CK2α (CK2α′) subunits alone also show kinase activity. Within the cell, the heterotetrameric holoenzyme and its monomeric CK2α (CK2α′) and CK2β subunits are in a dynamic equilibrium, which contributes to the control of the enzymatic activity in the cell [12].
The kinase CK2 is involved in various central nervous system (CNS) disorders. Recently, it was shown that Okur–Chung neurodevelopmental syndrome (OCNDS) [13] and Poirier–Bienvenu neurodevelopmental syndrome (POBINDS) [14] are related to mutations in the genes for the CK2α and CK2β subunits. Furthermore, increased levels of CK2 have been detected in neurons with pathological neurofibrillary tangles (Alzheimer’s disease) [15,16], and CK2 was identified to contribute to the formation of Levy bodies during the development of Parkinson’s disease [17,18]. In addition to CNS disorders, increased levels of CK2 inducing cell proliferation and inhibiting apoptosis were observed in several types of cancer [19,20,21,22]. Although widely expressed, CK2 represents a promising target for the development of novel therapies to combat cancer, since non-cancer cells appear to be less sensitive to CK2 inhibition with respect to cell proliferation and apoptosis [23,24].
Several CK2 inhibitors differing in efficiency and selectivity have been developed as potential new antitumor drugs [25,26,27]. The tricyclic carboxylic acid silmitasertib (1, CX-4945, Figure 1) targeting the ATP binding site of the CK2α (CK2α′) subunit [28,29] has been clinically evaluated for the treatment of cholangiocarcinoma (bile duct cancer) [30]. Dibenzofurans 2 were shown to strongly inhibit CK2 in an ATP competitive manner. Whereas the dichloro derivative 2a revealed an IC50 value of 29 nM [31], the regioisomeric dibromo derivative 2b was 5-fold more potent (IC50 = 5.8 nM), highly selective for CK2, and showed antiproliferative activity against a human prostate tumor cell line [32]. However, ligands interacting with the ATP binding site usually suffer from lower selectivity, since all other protein kinases contain a similarly structured ATP binding site as well [33,34].
In another approach, the association of CK2α and CK2β subunits is suppressed by protein–protein interaction inhibitors (PPIIs). Thus, peptide-based PPIIs such as the cyclic tridecapeptide Pc (13 amino acids) and its derivatives prevent the formation of the hetero-tetrameric CK2 holoenzyme by the inhibition of the CK2α/CK2β association [35,36,37]. In contrast to peptides, the 4-phenylindole CAM187 (3, Figure 1) is hydrolytically stable and blocks the CK2α/CK2β interaction (IC50 = 44 µM) by binding at the CK2α subunit, but not ATP competitively [38]. Although 3 could inhibit the CK2α/CK2β association, the kinase activity of CK2 was not significantly affected [38].
In addition to peptides and CAM187 (3), W16 (4, Figure 1) with a tetracyclic furocarbazole scaffold was reported to inhibit the CK2α/CK2β interaction, with an IC50 value of 30–40 µM, and the kinase activity of the CK2α subunit, with an IC50 value of 20 µM [39]. We recently confirmed these inhibitory activities of W16 by the determination of a Ki value of 31 µM and an IC50 value of 1.9 µM, respectively (see below). In this context, we also reported on the replacement of the furan ring of 4 by a pyrrole ring, leading to an increased inhibition of the CK2α/CK2β association. As an example, the (3aS,4S,10S,10aS)-configured pyrrolocarbazole 5 exhibited a Ki value of 4.9 µM [40]. Since the lead compounds 4 and 5 inhibit protein–protein interactions, we planned to extend their surface to increase their interactions with the rather flat protein surface. In particular, substituents at the imide N-atom in the 2-position, at the carboxamide in the 4-position, and at the phenyl moiety in the 10-position should be modified. The designed extended pyrrolocarbazoles do not fulfill the rule of five defined by Lipinski et al. [41], as their molecular weight exceeds the upper limit of 500 Da. However, in contrast to drugs addressing the structured binding pockets of enzymes or receptors, protein–protein interaction inhibitors have to interact with a large and rather flat surface of one protein. Therefore, we planned to extend the pyrrolocarbazole system in three directions to enlarge the contacts with the protein surface.

2. Results and Discussion

2.1. Synthesis of Tetracyclic Pyrrolocarbazoles

The tetracyclic framework was prepared by a three-component Levy reaction [42,43]. In a domino reaction, 2-(indolyl)acetate 6 reacted first with trimethoxybenzaldehyde (7a) to form a diene, which underwent a Diels–Alder reaction with maleimides 8, diastereoselectively providing the cis,cis,trans-configured pyrrolocarbazoles 9a and 9b in 79% and 83% yields, respectively. The Diels–Alder reaction with maleimides led to the kinetically favored cis,cis,cis-configured diastereomers, which epimerized at C-4 in the presence of CuSO4 in refluxing o-xylene to give the thermodynamically favored cis,cis,trans-configured diastereomers 9a and 9b [40,43] (Scheme 1).
In order to obtain diverse ligands, the ester 9a was hydrolyzed with NaOH and the resulting acid 10 [40] was coupled with various primary and secondary amines in the presence of the coupling agent COMU® [44]. Thus, a diverse set of secondary and tertiary amides 1117 was obtained. The low yields of 15 and 17 were due to purification issues (Scheme 1).
COMU® coupling of the acid 10 with enantiomerically pure primary amines derived from amino acids led to diastereomeric secondary amides 18a,b20a,b. After the separation of diastereomers, the enantiomerically pure secondary amides 18a,b, 19b, and 20a,b were isolated (Scheme 2).
In order to increase potential protein–protein interactions, the tetracyclic pyrrolocarbazole framework was expanded at the 2-position (imide N-atom) and at the phenyl moiety in the 10-position. For this purpose, the Levy reaction was performed with 2-(indolyl)acetate 6, 4-nitrobenzaldehyde (7b) and maleimides 8a-c, bearing various substituents at the N-atom, to obtain the cis,cis,trans-configured pyrrolocarbazoles 21ac in 25–40% yields. After the reduction of the NO2 moiety with Zn/NH4Cl, the primary amine 22c was acylated with 4-methoxybenzoyl chloride to afford the amide 23 in an 82% yield. In the benzamide 23, the tetracyclic pyrrolocarbazole framework was extended at the 2- and 10-positions (Scheme 3).

2.2. Pharmacological Evaluation

2.2.1. Inhibition of the CK2α/CK2β Interaction

A microscale thermophoresis (MST) assay was used to determine the interaction of the CK2α and CK2β subunits. In this assay, a constant concentration of the fluorescently labeled CK2β subunit was added to increasing concentrations of the CK2α subunit and the thermophoretic shift was recorded, respectively. These experiments resulted in a dissociation constant (KD value) of 11 nM for the CK2α/CK2β interaction, which is in agreement with reported values [40,45]. The same experiment was performed in the presence of 20, 50, or 100 µM of the test compounds (see Table 1). An increased KD′ value in the presence of the test compounds was evaluated as the inhibition of the association of the CK2α and CK2β subunits. The increased KD′ value was then transformed together with the employed concentration of the test compound into the Ki value for the inhibition of the CK2α/CK2β association (formula see Supporting Information). The recorded KD and KD′ values, as well as the calculated Ki values for the tetracyclic pyrrolocarbazoles 923 and the lead compound W16 (4), are displayed in Table 1.
Table 1 shows that the PPII of several prepared pyrrolocarbazoles exceeded the activity of the lead compound 4, and some compounds even revealed Ki values below 10 µM. Particularly high activity with Ki values below 7 µM was observed for the racemic acid (±)-10 (Ki = 1.9 µM), N-methylcarboxamide (±)-11 (Ki = 6.0 µM), the 2-(indolyl)ethyl derivative (±)-14 (Ki = 3.8 µM), and the enantiomerically pure histidine derivative (+)-20a (Ki = 6.1 µM). These results indicate that the large benzyloxazolidinyl substituent of the lead compound 4 is not essential to achieve a high inhibition of the CK2α/CK2β association. Smaller substituents at the carboxamide in the 4-position, such as the small methyl moiety of 11, also lead to a high PPII. However, an ester moiety instead of the carboxamide in the 4-position (e.g., 9, 2123) is not appropriate to strongly inhibit the CK2α/CK2β association. An extension at the 2-position with an additional benzyl moiety, as in 22c, or an extension of the phenyl moiety at the 10-postion, as in 23, did not result in a significant inhibition of the CK2α/CK2β association.

2.2.2. Inhibition of the Enzymatic Activity

The inhibition of the catalytic activity of the CK2 holoenzyme (CK2α2β2) was determined in an enzyme assay. In brief, the CK2 holoenzyme was incubated with the decapeptide RRRDDDSDDD and ATP. The amount of phosphorylated peptide (Ser7) was recorded by capillary electrophoresis (CE) [40,46]. In this assay, the lead compound W16 (4) inhibited the CK2 activity with an IC50 value of 1.9 µM [40].
In a first screening with a test compound concentration of 10 µM, only the histidine derivative (+)-20a exhibited more than 50% enzyme inhibition, indicating an IC50 value below 10 µM. Therefore, concentration-dependent CK2 inhibition was recorded only for (+)-20a, resulting in an IC50 value of 2.5 µM, which is close to the IC50 value of 4. Thus, the strong inhibition of the CK2α/CK2β association (Ki = 6.1 µM) by the histidine derivative (+)-20a was transferred into a strong inhibition of the enzymatic activity of the CK2 holoenzyme (IC50 = 2.5 µM).

3. Conclusions

In order to study the relationships between the structural features and the inhibition of the interactions between the CK2α and CK2β subunits of the protein kinase CK2, a series of pyrrolocarbazoles was prepared. The thermodynamically favored cis,cis,trans-configured pyrrolocarbazoles were obtained by a multicomponent Levy reaction as the key step allowing for modifications at the 2-, 4-, and 10-positions of the tetracyclic framework. The replacement of the O-atom of the furocarbazole lead compound W16 (4) by an N-atom retained or even increased the inhibition of the CK2α/CK2β association. Smaller N-substituents of the carboxamide in the 4-position instead of the large benzyloxazolidinyl substituent of the lead compound 4 were well tolerated and increased the PPII, as shown for the N-methylcarboxamide 11 (Ki = 6.0 µM), the N-indolylethylcarboxamide 14 (Ki = 3.8 µM), and the histidine derivative (+)-20a (Ki = 6.1 µM). Additional substituents at the imide N-atom in the 2-position or in the p-position at the phenyl moiety in the 10-position to increase the interactions with the protein surface did not lead to an increased inhibition of the CK2α/CK2β association. The inhibition of the CK2α/CK2β association of the histidine derivative (+)-20a translated into an inhibition of the kinase activity of the CK2 holoenzyme (IC50 = 2.5 µM), which is in the same range as the CK2 inhibition of the furocarbazole lead compound 4.

4. Experimental Part

4.1. Chemistry, General Methods

Oxygen- and moisture-sensitive reactions were carried out under nitrogen dried with silica gel with a moisture indicator (orange gel, VWR, Darmstadt, Germany) and in dry glassware (Schlenk flask or Schlenk tube). The temperature was controlled with dry ice/acetone (−78 °C), ice/water (0 °C), a Cryostat (Julabo TC100E-F, Seelbach, Germany), a magnetic stirrer MR 3001 K (Heidolph, Schwalbach, Germany), or am RCT CL (IKA, Staufen, Germany), together with the temperature controller EKT HeiCon (Heidolph) or VT-5 (VWR) and PEG or a silicone bath. All solvents were of analytical- or technical-grade quality. o-Xylene and toluene were dried with molecular sieves (3 Å). Demineralized water was used. Thin-layer chromatography (tlc) was used with tlc silica gel 60 F254 on aluminum sheets (VWR). Flash chromatography (fc) was used with silica gel 60, 40–63 µm (VWR) with parentheses including the diameter of the column (Ø), length of the stationary phase (l), fraction size (v), and eluent. Automated flash chromatography used IsoleraTM Spektra One (Biotage®, Global Go-to Separations Company, Stockholm, Sweeden), with parentheses including the cartridge size, flow rate, eluent, and a fractions size always of 20 mL. The melting point system MP50 (Mettler Toledo, Gießen, Germany) was open-capillary and uncorrected. A MicroTOFQII mass spectrometer (Bruker Daltonics, Bremen, Germany) was used, and deviations of the exact masses found from the calculated exact masses were 5 mDa or less; the data were analyzed with Data-Analysis® (Bruker Daltonics). NMR spectra were recorded in deuterated solvents on Agilent DD2 400 MHz and 600 MHz spectrometers (Agilent, Santa Clara, CA, USA); chemical shifts (δ) are reported in parts per million (ppm) against the reference substance tetramethylsilane and were calculated using the solvent residual peak of the undeuterated solvent. Coupling constants are given with a 0.5 Hz resolution. The assignment of 1H and 13C NMR signals was supported by 2-D NMR techniques where necessary. Am FT/IR Affinity®-1 spectrometer (Shimadzu, Düsseldorf, Germany) using ATR technique was utilized.

4.2. HPLC Method for the Determination of the Purity

Equipment 1, as follows: Pump: L-7100, degasser: L-7614, autosampler: L-7200, UV detector: L-7400, interface: D-7000, data transfer: D-line, and data acquisition: HSM-Software (all from Merck Hitachi, Darmstadt, Germany). Equipment 2, as follows: Pump: LPG-3400SD, degasser: DG-1210, autosampler: ACC-3000T, UV-detector: VWD-3400RS, interface: DIONEX UltiMate 3000, and data acquisition: Chromeleon 7 (equipment and software from Thermo Fisher Scientific, Lauenstadt, Germany). The column was as follows: LiChrospher® 60 RP-select B (5 µm), LiChroCART® 250–4 mm cartridge. The flow rate was 1.0 mL/min, the injection volume was 5.0 µL, and detection was performed at λ = 210 nm. The solvents were as follows: A: demineralized water with 0.05% (V/V) trifluoroacetic acid, B: CH3CN with 0.05% (V/V) trifluoroacetic acid; gradient elution (% A): 0–4 min: 90%; 4–29 min: gradient from 90% to 0%; 29–31 min: 0%; 31–31.5 min: gradient from 0% to 90%; 31.5–40 min: 90%.

4.3. Synthetic Procedures

  • Ethyl (3aRS,4SR,10RS,10aRS)-1,3-dioxo-10-(3,4,5-trimethoxyphenyl9a)-1,2,3,3a,4,5,10,10a-octahydropyrrolo[3,4-b]carbazole-4-carboxylate () [40]
  • Molecules 30 00063 i007
  • Under N2, indolylacetate 6 (203 mg, 1.00 mmol), maleimide (8a, 292 mg, 3.01 mmol) and 3,4,5-trimethoxybenzaldehyde (7a, 296 mg, 1.51 mmol) were dissolved in dry o-xylene (10 mL) in a pressure-resistant Schlenk tube. Crushed CuSO4 ∙ 5 H2O (25.2 mg, 0.10 mmol) was added to the solution and the mixture was heated to reflux for 16 h (oil bath temperature of 185 °C). After cooling to room temperature, the mixture was filtered and the filter was washed with CH2Cl2 (3 × 10 mL). The filtrate was concentrated in vacuo and the residue was purified by flash column chromatography (ethyl acetate/cyclohexane = 45:55, Ø 4 cm, h = 16 cm, v = 30 mL). Yellow solid, mp 220 °C, yield of 379 mg (79%). C26H26N2O7 (478.5). TLC (ethyl acetate/CH2Cl2 = 3:7): Rf = 0.38.
  • Purity (HPLC): 97.4%, (tR = 19.3 min). 1H NMR (600 MHz, DMSO-d6): δ (ppm) = 1.31 (t, J = 7.1 Hz, 3H, OCH2CH3), 3.53–3.57 (m, 1H, 10a-H), 3.57 (s, 3H, 4-OCH3), 3.61 (s, 6H, 3-OCH3, 5-OCH3), 4.05 (dd, J = 9.0/3.4 Hz, 1H, 3a-H), 4.20–4.33 (m, 2H, OCH2CH3), 4.49 (d, J = 3.5 Hz, 1H, 4-H), 4.74 (d, J = 8.3 Hz, 1H, 10-H), 6.21 (s, 2H, 2-HTMP, 6-HTMP), 6.88 (ddd, J = 8.0/7.0/1.0 Hz, 1H, 8-H), 7.05 (ddd, J = 8.1/6.9/1.2 Hz, 1H, 7-H), 7.20 (dd, J = 8.0/1.1 Hz, 1H, 9-H), 7.37 (dt, J = 8.2/0.9 Hz, 1H, 6-H), 10.92 (s, 2H, 2-H, 5-H). 13C NMR (151 MHz, DMSO-d6): δ (ppm) = 14.0 (1C, OCH2CH3), 36.9 (1C, C-4), 38.0 (1C, C-10), 42.5 (1C, C-3a), 45.5 (1C, C-10a), 55.6 (2C, 3-OCH3 5-OCH3), 59.9 (1C, 4-OCH3), 61.7 (1C, OCH2CH3), 106.0 (2C, C-2TMP, 6-CTMP), 111.3 (1C, C-9b), 111.5 (1C, C-6), 118.4 (1C, C-9), 118.7 (1C, C-8), 121.6 (1C, C-7), 125.4 (1C, C-9a), 128.5 (1C, C-4a), 136.2 (1C, C-4TMP), 136.4 (1C, C-1TMP), 136.6 (1C, C-5a), 152.1 (2C, C-3TMP, C-5TMP), 171.1 (1C, C-4-C=O), 177.7 (1C, C-1), 179.5 (1C, C-3). Exact mass (APCI): m/z = 479.1785 (calcd. 479.1813 for C26H27N2O7 [MH]+). IR (neat): ṽ [cm−1] = 2987 (w, C-Haliph.), 1775 (w, C=O), 1709 (s, C=O), 1119 (s, C-O), 752 (m, C-Harom.).
  • Ethyl (3aRS,4SR,10RS,10aRS)-2-methyl-1,3-dioxo-10-(3,4,5-trimethoxyphenyl)-1,2,3,3a,4,5,10,10a-octahydropyrrolo[3,4-b]carbazole-4-carboxylate (9b)
  • Molecules 30 00063 i008
  • Under N2, indolylacetate 6 (3.01 g, 14.8 mmol), N-methylmaleimide (8b, 5.00 g, 45.0 mmol), and 3,4,5-trimethoxybenzaldehyde (7a, 4.42 g, 22.5 mmol) were dissolved in dry o-xylene (100 mL). Crushed CuSO4 ∙ 5 H2O (351 mg, 1.41 mmol) was added to the solution and the mixture was heated to reflux for 16 h. After cooling to -20 °C, the mixture was filtered and the obtained solid was washed with water (3 × 25 mL) and n-pentane (5 × 25 mL) to give the product without further purification. Colorless solid, mp 215 °C, yield of 6.32 g (83%). C27H28N2O7 (492.5). TLC (ethyl acetate/cyclohexane = 1:1): Rf = 0.41. Purity (HPLC): 97.3%, (tR = 20.5 min). 1H NMR (600 MHz, DMSO-d6): δ (ppm) = 1.30 (t, J = 7.1 Hz, 3H; OCH2CH3), 2.35 (s, 3H, NCH3), 3.55 (s, 3H, 4-OCH3), 3.61 (s, 6H, 3-OCH3, 5-OCH3), 3.63 (t, J = 8.2 Hz, 1H, 10a-H), 4.06 (dd, J = 8.7/3.3 Hz, 1H, 3a-H), 4.21–4.33 (m, 2H, OCH2CH3), 4.57 (d, J = 3.0 Hz, 1H, 4-H), 4.76 (d, J = 8.0 Hz, 1H, 10-H), 6.13 (s, 2H, 2-HTMP, 6-HTMP), 6.88 (ddd, J = 7.9/7.0/1.0 Hz, 1H, 8-H), 7.05 (ddd, J = 8.2/7.0/1.2 Hz, 1H, 7-H), 7.19 (d, J = 7.9 Hz, 1H, 9-H), 7.38 (dt, J = 8.0/0.9 Hz, 1H, 6-H), 10.96 (s, 1H, 5-H). 13C NMR (151 MHz, DMSO-d6): δ (ppm) = 14.0 (1C, OCH2CH3), 23.7 (1C, NCH3), 36.6 (1C, C-4), 38.0 (1C, C-10), 41.4 (1C, C-3a), 44.7 (1C, C-10a), 55.7 (2C, 3-OCH3, 5-OCH3), 59.9 (1C, 4-OCH3), 61.8 (1C, OCH2CH3), 106.0 (2C, C-2TMP, C-6TMP), 110.8 (1C, C-9b), 111.5 (1C, C-6), 118.4 (1C, C-9), 118.7 (1C, C-7), 121.7 (1C, C-8), 125.4 (1C, C-9a), 128.4 (1C, C-4a), 136.1 (1C, C-1TMP), 136.3 (1C, C-4TMP), 136.7 (1C, C-5a), 152.1 (2C, C-3TMP, C-5TMP), 171.0 (1C, C-4-C=O), 176.4 (1C, C-1), 178.0 (1C, C-3). Exact mass (ESI): m/z = 493.1958 (calcd. 493.1969 for C27H29N2O7 [MH]+). IR (neat): ṽ [cm−1] = 2970 (w, C-Haliph.), 1743,1701 (s, C=O), 1180, 1115 (s, C-O).
  • (3aRS,4SR,10RS,10aRS)-1,3-Dioxo-10-(3,4,5-trimethoxyphenyl)-1,2,3,3a,4,5,10,10a-octahydropyrrolo[3,4-b]carbazole-4-carboxylic acid (10) [40]
  • Molecules 30 00063 i009
  • A solution of NaOH (2.60 g, 6.50 mmol) in water (50 mL) was added to a solution of ester 9a (5.06g, 10.56 mmol) in THF (50 mL). The mixture was stirred for 30 min at room temperature. Ethyl acetate (100 mL) was added and the phases were separated. The aqueous layer was washed with ethyl acetate (3 × 50 mL) to remove non-acidic impurities. HCl solution (2 M in water, 30 mL) was added to the aqueous layer and the resulting suspension was extracted with ethyl acetate (3 × 50 mL). The combined organic layers of the last extraction step were dried (Na2SO4), filtered, and concentrated in vacuo to obtain the product without further purification. Yellow solid, mp 162 °C, yield of 4.58 g (96%). C24H22N2O7 (450.4). TLC (MeOH/CH2Cl2 = 15:85 + 0.1% acetic acid): Rf = 0.33. Purity (HPLC): 94.7%, (tR = 16.5 min). 1H NMR (600 MHz, DMSO-d6): δ (ppm) = 3.54 (t, J = 8.4 Hz, 1H, 10a-H), 3.56 (s, 3H, 4-OCH3), 3.62 (s, 6H, 3-OCH3, 5-OCH3), 4.09 (dd, J = 9.0/3.6 Hz, 1H, 3a-H), 4.41 (d, J = 3.6 Hz, 1H, 4-H), 4.72 (d, J = 8.2 Hz, 1H, 10-H), 6.22 (s, 2H, 2-HTMP, 6-HTMP), 6.87 (ddd, J = 7.8/6.8/0.9 Hz, 1H, 8-H), 7.02 (ddd, J = 8.2/7.0/1.2 Hz, 1H, 7-H), 7.21 (d, J = 7.9 Hz, 1H, 9-H), 7.39 (d, J = 8.1 Hz, 1H, 6-H), 10.89 (s, 1H, 2-H), 10.92 (s, 1H, 5-H), 13.40 (s, 1H, COOH). 13C NMR (151 MHz, DMSO-d6): δ (ppm) = 37.0 (1C, C-4), 38.1 (1C, C-10), 42.3 (1C, C-3a), 45.5 (1C, C-10a), 55.6 (2C, 3-OCH3, 5-OCH3), 59.9 (1C, 4-OCH3), 106.0 (2C, C-2TMP, C-6TMP), 111.1 (1C, C-9b), 111.6 (1C, C-6), 118.2 (1C, C-9), 118.6 (1C, C-8), 121.4 (1C, C-7), 125.4 (1C, C-9a), 128.9 (1C, C-4a), 136.1 (1C, C-4TMP), 136.5 (1C, C-1TMP), 136.6 (1C, C-5a), 152.1 (2C, C-3TMP, C-5TMP), 172.4 (1C, COOH), 177.8 (1C, C-1), 179.9 (1C, C-3). Exact mass (ESI): m/z = 451.1477 (calcd. 451.1500 for C24H23N2O7 [MH]+). IR (neat): ṽ [cm−1] = 2939, 2835 (m, C-Haliph.), 1709 (s, C=O), 1119 (m, C-O), 745 (m, C-Harom.).
  • (3aRS,4SR,10RS,10aRS)-N-Methyl-1,3-dioxo-10-(3,4,5-trimethoxyphenyl)-1,2,3,3a,4,5,10,10a-octahydropyrrolo[3,4-b]carbazole-4-carboxamide (11)
  • Molecules 30 00063 i010
  • Carboxylic acid 10 (212 mg, 0.47 mmol), COMU® (242 mg, 0.56 mmol), and DIPEA (140 mg, 1.08 mmol) were dissolved in dry THF (15 mL) at 0 °C. Then, a solution of methylamine (17.6 mg, 0.56 mmol) in THF (2 mL) was added dropwise. The mixture was stirred for 2 h at 0 °C. After the completion of the transformation, the solution was allowed to warm to ambient temperature and ethyl acetate (30 mL) was added. The mixture was extracted with HCl solution (1 M in water, 2 × 30 mL) and saturated NaCl solution. The organic layer was dried (Na2SO4), filtered, and concentrated in vacuo. The residue was purified by automatic flash column chromatography (cartridge: SNAP 50 g, flow rate of 50 mL/min, ethyl acetate) to yield a yellow solid. For further purification, the obtained solid was dissolved in ethyl acetate (50 mL) and extracted with NaHCO3 solution (0.1 M in water, 3 × 50 mL). The organic layer was dried (Na2SO4), filtered, and the solvent was removed in vacuo. Yellow solid, mp 215 °C, yield of 106 mg (49%). C25H25N3O6 (463.5). TLC (ethyl acetate): Rf = 0.31. Purity (HPLC): 95.6%, (tR = 16.0 min). 1H NMR (600 MHz, DMSO-d6): δ (ppm) = 2.81 (d, J = 4.6 Hz, 3H, NHCH3), 3.52 (dd, J = 9.6/7.9 Hz, 1H, 10a-H), 3.55 (s, 3H, 4-OCH3), 3.65 (s, 6H, 3-OCH3, 5-OCH3), 4.00 (dd, J = 9.5/5.0 Hz, 1H, 3a-H), 4.36 (d, J = 5.0 Hz, 1H, 4-H), 4.74 (d, J = 7.9 Hz, 1H, 10-H), 6.27 (s, 2H, 2-HTMP, 6-HTMP), 6.90 (ddd, J = 8.0/7.0/1.0 Hz, 1H, 8-H), 7.03 (ddd, J = 8.1/7.0/1.1 Hz, 1H, 7-H) 7.34–7.36 (m, 1H, 9-H), 7.36–7.37 (m, 1H, 6-H), 8.61 (q, J = 4.6 Hz, 1H, NHamide), 10.67 (s, 1H, 2-H), 10.88 (s, 1H, 5-H). 13C NMR (151 MHz, DMSO-d6): δ (ppm) = 26.3 (1C, NHCH3), 38.1 (1C, C-10), 38.6 (1C, C-4), 42.6 (1C, C-3a), 46.2 (1C, C-10a), 55.7 (2C, 3-OCH3, 5-OCH3), 59.9 (1C, 4-OCH3), 105.7 (2C, C-2TMP, C-6TMP), 111.4 (1C, C-9b), 111.6 (1C, C-6), 117.8 (1C, C-9), 118.6 1C, C-8), 121.2 (1C, C-7), 125.5 (1C, C-9a), 131.3 (1C, C-4a), 136.1 (1C, C-4TMP), 136.3 (1C, C-1TMP), 137.0 (1C, C-5a), 152.2 (1C, C-3TMP, C-5TMP), 170.5 (1C, COamide), 178.1 (1C, C-1), 180.4 (1C, C-3). Exact mass (ESI): m/z = 464.1818 (calcd. 451.1816 for C25H25N3O6 [MH]+). IR (neat): ṽ [cm−1] = 2978, 2889 (m, C-Haliph.), 1697, 1678 (s, C=O), 1119 (m, C-O), 741 (m, C-Harom.).
  • (3aRS,4SR,10RS,10aRS)-N-Benzyl-1,3-dioxo-10-(3,4,5-trimethoxyphenyl)-1,2,3,3a,4,5,10,10a-octahydropyrrolo[3,4-b]carbazole-4-carboxamide (12)
  • Molecules 30 00063 i011
  • Carboxylic acid 10 (135 mg, 0.30 mmol), COMU® (168 mg, 0.39 mmol), and DIPEA (90.6 mg, 0.70 mmol) were dissolved in dry THF (5 mL) at room temperature. Then, a solution of benzylamine (42.1 mg, 0.39 mmol) in THF (2 mL) was added dropwise. The mixture was stirred for 2 h at room temperature. After the completion of the transformation, ethyl acetate (50 mL) was added. The mixture was extracted successively with NaHCO3 solution (0.1 M in water, 3 × 25 mL), HCl solution (1 M in water, 3 × 25 mL), and saturated NaCl solution (3 × 25 mL). The organic layer was dried (Na2SO4), filtered, and concentrated in vacuo. The residue was purified by flash column chromatography (ethyl acetate/cyclohexane = 6:4, Ø 2 cm, h = 18 cm, v = 10 mL). Yellow solid, mp 157 °C, yield of 136 mg (84%). C31H29N3O6 (539.6). TLC (ethyl acetate/cyclohexane = 6:4): Rf = 0.41. Purity (HPLC): 96.9%, (tR = 19.3 min). 1H NMR (600 MHz, DMSO-d6): δ (ppm) = 3.56 (s, 3H, 4-OCH3), 3.57 (dd, J = 9.5/8.0 Hz, 1H, 10a-H), 3.64 (s, 6H, 3-OCH3, 5-OCH3), 4.03 (dd, J = 9.0/4.9 Hz, 1H, 3a-H), 4.26 (dd, J = 15.2/4.2 Hz, 1H, PhCH2NH), 4.48 (d, J = 5.0 Hz, 1H, 4-H), 4.75 (dd, J = 15.3/7.3 Hz, 1H, PhCH2NH), 4.76 (d, J = 8.1 Hz, 1H, 10-H), 6.29 (s, 2H, 2-HTMP, 6-HTMP), 6.91 (ddd, J = 7.9/7.0/1.0 Hz, 1H, 8-H), 7.04 (ddd, J = 8.2/7.0/1.2 Hz, 1H, 7-H), 7.28 (tt, J = 7.3/1.7 Hz, 1H, 4-Hbenzyl), 7.33–7.39 (m, 4H, 6-H, 9-H, 3-Hbenzyl, 5-Hbenzyl), 7.40–7.42 (m, 2H, 2-Hbenzyl, 6-Hbenzyl), 9.09 (dd, J = 7.3/4.3 Hz, 1H, NHamide), 10.73 (s, 1H, 2-H), 10.91 (s, 1H, 5-H). 13C NMR (151 MHz, DMSO-d6): δ (ppm) = 38.1 (1C, C-10), 38.7 (1C, C-4), 42.9 (1C, C-3a), 43.1 (1C, PhCH2NH), 46.1 (1C, C-10a), 55.7 (2C, 3-OCH3, 5-OCH3), 59.9 (1C, 4-OCH3), 105.8 (2C, C-2TMP, C-6TMP), 111.3 (1C, C-9b) 111.7 (1C, C-6), 117.9 (1C, C-9), 118.7 (1C, C-8), 121.3 (1C, C-7), 125.5 (1C, C-9a), 126.9 (1C, C-4benzyl), 127.5 (2C, C-2benzyl, C-6benzyl), 128.3 (2C, C-3benzyl, C-5benzyl), 131.2 (1C, C-4a), 136.1 (1C, C-4TMP), 136.3 (1C, C-1TMP), 137.0 (1C, C-5a), 139.0 (1C, C-1benzyl), 152.2 (2C, C-3TMP, C-5TMP), 170.4 (1C, COamide), 178.1 (1C, C-1), 180.3 (1C, C-3). Exact mass (ESI): m/z = 540.2125 (calcd. 540.2129 for C31H30N3O6 [MH]+). IR (neat): ṽ [cm−1] = 2978, 2889 (s, C-Haliph.), 1712 (s, C=O), 1153,1122 (s, C-O), 741 (m, C-Harom.).
  • (3aRS,4SR,10RS,10aRS)-N-(4-Chlorobenzyl)-1,3-dioxo-10-(3,4,5-trimethoxyphenyl)-1,2,3,3a,4,5,10,10a-octahydropyrrolo[3,4-b]carbazole-4-carboxamide (13)
  • Molecules 30 00063 i012
  • Carboxylic acid 10 (135 mg, 0.30 mmol), COMU® (155 mg, 0.36 mmol), and DIPEA (86.1 mg, 0.67 mmol) were dissolved in dry THF (10 mL) at 0 °C. Then, a solution of 4-chlorobenzylamine (51.2 mg, 0.36 mmol) in THF (2 mL) was added dropwise. The mixture was stirred for 30 min at 0 °C and 1 h at room temperature. After the completion of the transformation, ethyl acetate (30 mL) was added. The mixture was extracted with HCl solution (1 M in water, 5 × 30 mL) and saturated NaCl solution (2 × 25 mL). The organic layer was dried (Na2SO4), filtered, and concentrated in vacuo. The residue was adsorbed onto silica and purified by automatic flash column chromatography (cartridge: SNAP 50g, flow rate of 50 mL/min, ethyl acetate/cyclohexane = 30:70 → 0:100). Yellow solid, mp 204 °C, yield of 123 mg (71%). C31H28ClN3O6 (574.0). TLC (ethyl acetate/cyclohexane = 6:4): Rf = 0.38. Purity (HPLC): 96.9%, (tR = 20.3 min). 1H NMR (400 MHz, DMSO-d6): δ (ppm) = 3.56 (s, 3H, 4-OCH3), 3.56 (dd, J = 9.6/8.0 Hz, 1H, 10a-H), 3.64 (s, 6H, 3-OCH3, 5-OCH3), 4.00 (dd, J = 9.5/4.9 Hz, 1H, 3a-H), 4.25 (dd, J = 15.4/4.4 Hz, 1H, PhCH2NH), 4.46 (d, J = 4.9 Hz, 1H, 4-H), 4.71 (dd, J = 15.4/7.1 Hz, 1H, PhCH2NH), 4.76 (d, J = 8.0 Hz, 1H, 10-H), 6.28 (s, 2H, 2-HTMP, 6-HTMP), 6.91 (ddd, J = 8.0/7.0/1.0 Hz, 1H, 8-H), 7.04 (ddd, J = 8.2/7.0/1.2 Hz, 1H, 7-H), 7.34 (d, J = 7.8 Hz, 1H, 9-H), 7.37 (d, J = 8.0 Hz, 1H, 6-H), 7.40–7.45 (m, 4H, 2-Hbenzyl, 3-Hbenzyl, 5-Hbenzyl, 6-Hbenzyl), 9.11 (dd, J = 7.1/4.5 Hz, 1H, NHamide), 10.75 (s, 1H, 2-H), 10.92 (s, 1H, 5-H). 13C NMR (101 MHz, DMSO-d6): δ (ppm) = 38.0 (1C, C-10), 38.7 (1C, C-4), 42.4 (1C, PhCH2NH), 42.9 (1C, C-3a), 46.1 (1C, C-10a), 55.7 (2C, 3-OCH3, 5-OCH3), 59.9 (1C, 4-OCH3), 105.8 (2C, C-2TMP, C-6TMP), 111.3 (1C, C-9b) 111.7 (1C, C-6), 118.0 (1C, C-9), 118.7 (1C, C-8), 121.3 (1C, C-7), 125.5 (1C, C-9a), 128.2 (2C, C-2benzyl, C-6benzyl), 129.3 (2C, C-3benzyl, C-5benzyl), 131.1 (1C, C-4a), 131.4 (1C, C-4benzyl), 136.1 (1C, C-4TMP), 136.3 (1C, C-1TMP), 137.0 (1C, C-5a), 138.1 (1C, C-1benzyl), 152.2 (2C, C-3TMP, C-5TMP), 170.5 (1C, COamide), 178.1 (1C, C-1), 180.3 (1C, C-3). Exact mass (ESI): m/z = 574.1730 (calcd. 574.1739 for C31H29ClN3O6 [MH]+). IR (neat): ṽ [cm−1] = 2970, 2940 (s, C-Haliph.), 1717, 1682 (s, C=O), 1173, 1126 (s, C-O), 745 (m, C-Harom.).
  • (3aRS,4SR,10RS,10aRS)-N-[2-(Indol-3-yl)ethyl]-1,3-dioxo-10-(3,4,5-trimethoxyphenyl)-1,2,3,3a,4,5,10,10a-octahydropyrrolo[3,4-b]carbazole-4-carboxamide (14)
  • Molecules 30 00063 i013
  • Carboxylic acid 10 (136 mg, 0.30 mmol), COMU® (154 mg, 0.36 mmol), and DIPEA (117 mg, 0.90 mmol) were dissolved in ethyl acetate (10 mL) at room temperature. Then, 2-(indol-3-yl)ethanamine (58.4 mg, 0.36 mmol) was added to the solution. The mixture was stirred for 4 h at room temperature. After the completion of the transformation, ethyl acetate (30 mL) was added. The mixture was extracted with HCl solution (1 M in water, 3 × 20 mL) and saturated NaCl solution (2 × 25 mL). The organic layer was dried (Na2SO4), filtered, and concentrated in vacuo. The residue was purified by automatic flash column chromatography (cartridge: SNAP 50 g, flow rate of 50 mL/min, ethyl acetate/cyclohexane = 35:65 → 0:100) to obtain a yellow solid. For further purification, the solid was recrystallized (ethyl acetate/cyclohexane), filtered, and washed with cold ethanol (2 × 10 mL). Colorless solid, mp 182 °C, yield of 93 mg (52%). C34H32N4O6 (592.7). TLC (ethyl acetate/cyclohexane = 7:3): Rf = 0.33. Purity (HPLC): 99.4%, (tR = 19.5 min). 1H NMR (400 MHz, DMSO-d6): δ (ppm) = 3.01 (t, J = 7.6 Hz, 2H, NHCH2CH2), 3.40–3.47 (m, 1H, NHCH2CH2), 3.53 (dd, J = 9.5/8.0 Hz, 1H, 10a-H), 3.56 (s, 3H, 4-OCH3), 3.65 (s, 6H, 3-OCH3, 5-OCH3), 3.62–3.68 (m, 1H, NHCH2CH2), 3.99 (dd, J = 9.4/4.6 Hz, 1H, 3a-H), 4.42 (d, J = 4.6 Hz, 1H, 4-H), 4.74 (d, J = 8.0 Hz, 1H, 10-H), 6.27 (s, 2H, 2-HTMP, 6-HTMP) 6.89 (ddd, J = 7.9/7.0/1.0 Hz, 1H, 8-H), 7.00 (ddd, J = 7.9/7.0/1.1 Hz, 1H, 5-Hindolyl), 7.02 (ddd, J = 8.2/7.0/1.2 Hz, 1H, 7-H), 7.09 (ddd, J = 8.1/6.9/1.2 Hz, 1H, 6-Hindolyl), 7.24 (d, J = 2.2 Hz, 1H, 2-Hindolyl), 7.31 (dt, J = 8.2/0.8 Hz, 1H, 6-H), 7.32 (d, J = 8.0 Hz, 1H, 9-H), 7.36 (dt, J = 8.1/0.9 Hz, 1H, 7-Hindolyl), 7.62 (d, J = 7.9 Hz, 1H, 4-Hindolyl), 8.73 (t, J = 5.6 Hz, 1H, NHamide), 10.42 (s, 1H, 5-H), 10.87 (d, J = 2.4 Hz, 1H, 1-Hindolyl), 10.89 (s, 1H, 2-H). 13C NMR (101 MHz, DMSO-d6): δ (ppm) = 25.0 (1C, NHCH2CH2), 38.1 (1C, C-10), 38.5 (1C, C-4), 40.3 (1C, NHCH2CH2), 42.7 (1C, C-3a), 46.1 (1C, C-10a), 55.7 (2C, 3-OCH3, 5-OCH3), 59.9 (1C, 4-OCH3), 105.9 (2C, C-2TMP, C-6TMP), 111.4 (1C, C-6), 111.4 (1C, C-7indolyl), 111.6 (1C, C-9b), 111.7 (1C, C-3indolyl), 117.9 (1C, C-9), 118.3 (1C, C-5indolyl), 118.3 (1C, C-4indolyl), 118.7 (1C, C-8), 121.0 (1C, C-6indolyl), 121.3 (1C, C-7), 122.7 (1C, C-2indolyl), 125.6 (1C, C-9a), 127.2 (1C, C-3aindolyl), 131.2 (1C, C-4a), 136.1 (1C, C-4TMP), 136.2 (1C, C-5a), 136.3 (1C, C-7aindolyl), 136.9 (1C, C-1TMP), 152.2 (2C, C-3TMP, C-5TMP), 170.1 (1C, COamide), 178.1 (1C, C-1), 180.3 (1C, C-3). Exact mass (ESI): m/z = 593.2370 (calcd. 593.2395 for C34H33N4O6 [MH]+). IR (neat): ṽ [cm−1] = 2978, 2940 (s, C-Haliph.), 1701 (s, C=O), 1177, 1123 (s, C-O), 733 (s, C-Harom.).
  • (3aRS,4SR,10RS,10aRS)-1,3-Dioxo-N-(pyridin-3-yl)-10-(3,4,5-trimethoxyphenyl)-1,2,3,3a,4,5,10,10a-octahydropyrrolo[3,4-b]carbazole-4-carboxamide (15)
  • Molecules 30 00063 i014
  • Carboxylic acid 10 (135 mg, 0.30 mmol), COMU® (155 mg, 0.36 mmol), and DIPEA (85.5 mg, 0.66 mmol) were dissolved in dry THF (10 mL) at room temperature. Then, pyridin-3-amine (37.7 mg, 0.40 mmol) was added to the solution. The mixture was stirred for 12 h at room temperature. After the completion of the transformation, ethyl acetate (50 mL) was added. The mixture was extracted with HCl solution (1 M in water, 5 × 20 mL) and saturated NaCl solution (2 × 20 mL). The organic layer was dried (Na2SO4), filtered, and concentrated in vacuo. The residue was purified by automatic flash column chromatography (cartridge: SNAP 50g, flow rate of 50 mL/min, MeOH/CH2Cl2 = 0:100 → 10:90). Colorless solid, mp 198 °C, yield of 21 mg (12%). C29H26N4O6 (526.5). TLC (MeOH/CH2Cl2 = 5:95): Rf = 0.14. Purity (HPLC): 97.6%, (tR = 15.7 min). 1H NMR (400 MHz, DMSO-d6): δ (ppm) = 3.57 (s, 3H, 4-OCH3), 3.60 (dd, J = 9.6/8.0 Hz, 1H, 10a-H), 3.68 (s, 6H, 3-OCH3, 5-OCH3), 4.14 (dd, J = 9.5/4.9 Hz, 1H, 3a-H), 4.67 (d, J = 5.0 Hz, 1H, 4-H), 4.81 (d, J = 7.9 Hz, 1H, 10-H), 6.31 (s, 2H, 2-HTMP, 6-HTMP), 6.92 (ddd, J = 7.9/7.1/1.0 Hz, 1H, 8-H), 7.04 (ddd, J = 8.2/7.0/1.2 Hz, 1H, 7-H), 7.34 (d, J = 8.1 Hz, 1H, 6-H), 7.40 (d, J = 7.9 Hz, 1H, 9-H), 7.45 (dd, J = 8.3/4.7 Hz, 1H, 5-Hpyridinyl), 8.22 (ddd, J = 8.3/2.6/1.5 Hz, 1H, 6-Hpyridinyl), 8.36 (dd, J = 4.7/1.5 Hz, 1H, 4-Hpyridinyl), 8.93 (d, J = 2.5 Hz, 1H, 2-Hpyridinyl), 10.95 (s, 1H, 5-H), 10.97 (s, 1H, 2-H), 11.02 (s, 1H, NHamide). 13C NMR (101 MHz, DMSO-d6): δ (ppm) = 38.0 (1C, C-10), 42.8 (1C, C-3a), 46.0 (1C, C-10a), 55.8 (2C, 3-OCH3, 5-OCH3), 59.9 (1C, 4-OCH3), 105.9 (2C, C-2TMP, C-6TMP), 111.3 (1C, C-9b), 112.0 (1C, C-6), 118.0 (1C, C-9), 118.8 (1C, C-8), 121.5 (1C, C-7), 123.7 (1C, C-5pyridinyl), 125.4 (1C, C-9a), 126.7 (1C, C-6pyridinyl), 130.4 (1C, C-4a), 135.9 (1C, C-3pyridinyl), 136.2 (1C, C-4TMP), 136.4 (1C, C-5a), 137.0 (1C, C-1TMP), 141.2 (1C, C-2pyridinyl), 144.5 (1C, C-4pyridinyl), 152.3 (2C, C-3TMP, C-5TMP), 169.7 (1C, COamide), 178.0 (1C, C-1), 180.3 (1C, C-3). The signal for C-4 C-atom is overlaid by the DMSO signals at 39.5 ppm. Exact mass (ESI): m/z = 527.1919 (calcd. 527.1925 for C29H27N4O6 [MH]+). IR (neat): ṽ [cm−1] = 2978, 2932 (s, C-Haliph.), 1709 (s, C=O), 1173, 1123 (s, C-O), 745 (s, C-Harom.).
  • (3aRS,4SR,10RS,10aRS)-4-[(Piperidin-1-yl)carbonyl]-10-(3,4,5-trimethoxyphenyl)-4,5,10,10a-tetrahydropyrrolo[3,4-b]carbazole-1,3(2H,3aH)-dione (16)
  • Molecules 30 00063 i015
  • Carboxylic acid 10 (136 mg, 0.30 mmol), COMU® (168 mg, 0.39 mmol), and DIPEA (89.6 mg, 0.69 mmol) were dissolved in dry THF (10 mL) at 0 °C. Then, a solution of piperidine (32.2 mg, 0.38 mmol) in THF (3 mL) was added dropwise. The mixture was stirred for 2 h at 0 °C. After the completion of the transformation, the solution was allowed to warm to ambient temperature and ethyl acetate (30 mL) was added. The mixture was extracted with NaHCO3 solution (0.1 M in water, 3 × 25 mL), HCl solution (1 M in water, 3 × 25 mL), and saturated NaCl solution (1 × 25 mL). The organic layer was dried (Na2SO4), filtered, and concentrated in vacuo. The residue was purified by flash column chromatography (ethyl acetate/cyclohexane = 6:4 → 7:3, Ø 2 cm, h = 25 cm, v = 10 mL). Colorless solid, mp 293 °C, yield of 103 mg (66%). C29H31N3O6 (517.6). TLC (ethyl acetate/cyclohexane = 6:4): Rf = 0.29. Purity (HPLC): 96.7%, (tR = 18.4 min). 1H NMR (600 MHz, DMSO-d6): δ (ppm) = 1.43–1.74 (m, 6H, N(CH2CH2)2CH2), 3.22 (ddd, J = 12.8/9.7/3.0 Hz, 1H, N(CH2CH2)2CH2), 3.51 (dd, J = 9.3/8.0 Hz, 1H, 10a-H), 3.57 (s, 3H, 4-OCH3), 3.59–3.62 (m, 1H, N(CH2CH2)2CH2), 3.63 (s, 6H, 3-OCH3, 5-OCH3), 3.92 (dt, J = 13.7/4.2 Hz, 1H, N(CH2CH2)2CH2), 3.97 (dd, J = 9.1/4.3 Hz, 1H, 3a-H), 3.95–4.02 (m, 1H, N(CH2CH2)2CH2), 4.76 (d, J = 8.3 Hz, 1H, 10-H), 4.77 (d, J = 4.0 Hz, 1H, 4-H), 6.28 (s, 2H, 2-HTMP, 6-HTMP), 6.89 (ddd, J = 7.9/7.0/1.0 Hz, 1H, 8-H), 7.03 (ddd, J = 8.1/7.0/1.2 Hz, 1H, 7-H), 7.27 (dd, J = 8.0/1.0 Hz, 1H, 9-H), 7.33 (dd, J = 8.1/0.9 Hz, 1H, 6-H), 10.78 (s, 1H, 5-H), 10.91 (s, 1H, 2-H). 13C NMR (101 MHz, DMSO-d6): δ (ppm) = 24.2 (1C, N(CH2CH2)2CH2) 25.3 (1C, N(CH2CH2)2CH2), 26.0 (1C, N(CH2CH2)2CH2), 34.3 (1C, C-4), 38.3 (1C, C-10), 43.3 (1C, N(CH2CH2)2CH2), 44.0 (1C, C-3a), 46.3 (1C, C-10a), 47.0 (1C, N(CH2CH2)2CH2), 55.5 (2C, 3-OCH3, 5-OCH3), 59.9 (1C, 4-OCH3), 105.9 (2C, C-2TMP, C-6TMP), 111.3 (1C, C-6), 111.5 (1C, C-9b), 118.0 (1C, C-9), 118.6 (1C, C-8), 121.2 (1C, C-7), 125.5 (1C, C-9a), 131.1 (1C, C-4a), 136.1 (1C, C-4TMP), 136.4 (1C, C-5a), 136.6 (1C, C-1TMP), 152.2 (2C, C-3TMP, C-5TMP), 168.5 (1C, COamide), 178.0 (1C, C-1), 180.2 (1C, C-3). Exact mass (ESI): m/z = 518.2280 (calcd. 518.2286 for C29H32N3O6 [MH]+). IR (neat): ṽ [cm−1] = 2978, 2886 (s, C-Haliph.), 1709 (s, C=O), 1150, 1119 (s, C-O), 799, 745 (s, C-Harom.).
  • (3aRS,4SR,10RS,10aRS)-N-(1H-Benzimidazol-2-yl)-1,3-dioxo-10-(3,4,5-trimethoxyphenyl)-1,2,3,3a,4,5,10,10a-octahydropyrrolo[3,4-b]carbazole-4-carboxamide (17)
  • Molecules 30 00063 i016
  • Carboxylic acid 10 (136 mg, 0.30 mmol), COMU® (167 mg, 0.39 mmol), and DIPEA (128 mg, 0.99 mmol) were dissolved in dry THF (10 mL) at room temperature. Then, benzimidazol-2-amine (52.2 mg, 0.39 mmol) was added. The mixture was stirred for 2 h at room temperature. After the completion of the transformation, ethyl acetate (50 mL) was added. The mixture was extracted with saturated NH4Cl solution (3 × 25 mL), NaHCO3 solution (0.1 M in water, 3 × 25 mL), and saturated NaCl solution (1 × 25 mL). The organic layer was dried (Na2SO4), filtered, and concentrated in vacuo. The residue was dissolved in ethyl acetate (10 mL), and n-hexane (30 mL) was added. The resulting mixture was filtered, and the precipitate was washed with cold Et2O. Colorless solid, mp 233 °C, yield of 39 mg (23%). C31H27N5O6 (565.6). TLC (ethyl acetate/cyclohexane = 6:4): Rf = 0.16. Purity (HPLC): 97.3%, (tR = 17.7 min). 1H NMR (600 MHz, DMSO-d6): δ (ppm) = 3.57 (s, 3H, 4-OCH3), 3.65 (dd, J = 9.8/7.9 Hz, 1H, 10a-H), 3.70 (s, 6H, 3-OCH3, 5-OCH3), 4.19 (dd, J = 9.7/5.8 Hz, 1H, 3a-H), 4.79 (d, J = 5.8 Hz, 1H, 4-H), 4.83 (d, J = 8.0 Hz, 1H, 10-H), 6.34 (s, 2H, 2-HTMP, 6-HTMP), 6.93 (ddd, J = 7.9/6.9/1.0 Hz, 1H, 8-H), 7.03 (ddd, J = 8.1/6.9/1.2 Hz, 1H, 7-H), 7.11–7.16 (m, 2H, 5-HBI, 6-HBI), 7.30–7.34 (m, 1H, 6-H), 7.44 (d, J = 7.9 Hz, 1H, 9-H), 7.50–7.54 (m, 2H, 4-HBI, 7-HBI), 11.03 (s, 1H, 5-H), 11.03 (s, 1H, 2-H), 12.20 (s, 2H, NHamide, 1-HBI). 13C NMR (101 MHz, DMSO-d6): δ (ppm) = 38.1 (1C, C-10), 42.9 (1C, C-3a), 46.1 (1C, C-10a), 55.7 (2C, 3-OCH3, 5-OCH3), 59.9 (1C, 4-OCH3), 105.5 (2C, C-2TMP, C-6TMP), 111.4 (1C, C-6), 112.1 (1C, C-9b), 117.9 (1C, C-9), 118.8 (1C, C-8), 121.3 (2C, C-5BI, C-6BI), 121.4 (1C, C-7), 125.4 (1C, C-9a), 130.4 (1C, C-4a), 136.1 (1C, C-4TMP), 136.3 (1C, C-5a), 137.1 (1C, C-1TMP), 152.3 (2C, C-3TMP, C-5TMP), 172.0 (1C, COamide), 178.1 (1C, C-1), 180.3 (1C, C-3). Signals for C-3aBI, C-4BI, C-7BI, and C-7aBI C-atoms were not observed in the spectrum. The signal for C-4 C-atom was overlaid by the DMSO signal at 39.5 ppm. Exact mass (ESI): m/z = 566.2037 (calcd. 566.2034 for C31H28N5O6 [MH]+). IR (neat): ṽ [cm−1] = 2909, 2835 (w, C-Haliph.), 1701 (s, C=O), 1177, 1126 (s, C-O), 798, 745 (s, C-Harom.).
  • Methyl N-{[(3aS,4R,10S,10aS)-1,3-dioxo-10-(3,4,5-trimethoxyphenyl)-1,2,3,3a,4,5,10,10a-octahydropyrrolo[3,4-b]carbazol-4-yl]carbonyl}-(S)-serinate ((+)-18a) and methyl N-{[(3aR,4S,10R,10aR)-1,3-dioxo-10-(3,4,5-trimethoxyphenyl)-1,2,3,3a,4,5,10,10a-octahydropyrrolo[3,4-b]carbazol-4-yl]carbonyl}-(S)-serinate ((-)-18b)
  • Molecules 30 00063 i017
  • Carboxylic acid 10 (136 mg, 0.30 mmol), COMU® (168 mg, 0.39 mmol), and DIPEA (128 mg, 0.99 mmol) were dissolved in dry DMF (10 mL) at 0 °C. After the addition of (S)-serine methyl ester HCl (38.9 mg, 0.25 mmol), the mixture was stirred for 2 h at 0 °C. After the completion of the transformation, the solution was allowed to warm to ambient temperature, and ethyl acetate (30 mL) was added. The mixture was washed with HCl solution (1 M in water, 3 × 25 mL) and saturated NaCl solution (1 × 25 mL). The organic layer was dried (Na2SO4), filtered, and concentrated in vacuo. The residue was purified by flash column chromatography (ethyl acetate/cyclohexane = 8:2, Ø 2 cm, h = 15 cm, v = 10 mL) to give both diastereomers.
  • (+)-18a [Rf = 0.41 (ethyl acetate/cyclohexane = 8:2)]: Yellow solid, mp 174 °C, yield of 37 mg (27%). C28H29N3O9 (551.6). Purity (HPLC): 93.7%, (tR = 16.5 min). Specific rotation: [ α ] D 20 = +100 (c = 1.7, THF). 1H NMR (600 MHz, DMSO-d6): δ (ppm) = 3.51 (dd, J = 9.6/7.8 Hz, 1H, 10a-H), 3.56 (s, 3H, 4-OCH3), 3.68 (s, 6H, 3-OCH3, 5-OCH3), 3.78 (s, 3H, CO2CH3), 3.78–3.84 (m, 1 H, CHCH2OH), 3.97 (dt, J = 11.0/5.1 Hz, 1H, CHCH2OH), 4.08 (dd, J = 9.6/5.2 Hz, 1H, 3a-H), 4.60–4.69 (m, 1H, CHCH2OH), 4.67 (d, J = 5.3 Hz, 1H, 4-H), 4.76 (d, J = 7.8 Hz, 1H, 10-H), 5.41 (t, J = 5.2 Hz, 1H, CHCH2OH), 6.33 (s, 2H, 2-HTMP, 6-HTMP), 6.95 (ddd, J = 7.9/7.0/1.0 Hz, 1H, 8-H), 7.08 (ddd, J = 8.1/7.0/1.2 Hz, 1H, 7-H), 7.34 (dt, J = 8.0/0.9 Hz, 1H, 6-H), 7.42 (dd, J = 7.9/1.0 Hz, 1H, 9-H), 9.35 (d, J = 7.9 Hz, 1H), NHamide), 10.38 (s, 1H, 5-H), 10.93 (s, 1H, 2-H). 13C NMR (151 MHz, DMSO-d6): δ (ppm) = 38.1 (1C, C-10), 38.2 (1C, C-4), 41.7 (1C, C-3a), 46.3 (1C, C-10a), 52.7 (1C, CO2CH3), 55.3 (1C, CHCH2OH), 55.8 (2C, 3-OCH3, 5-OCH3), 59.9 (1C, 4-OCH3), 61.0 (1C, CHCH2OH), 105.8 (2C, C-2TMP, C-5TMP), 111.0 (1C, C-6), 112.0 (1C, C-9b), 118.1 (1C, C-9), 119.0 (1C, C-8), 121.6 (1C, C-7), 125.6 (1C, C-9a), 131.3 (1C, C-4a), 135.7 (1C, C-5a), 136.2 (1C, C-4TMP), 136.9 (1C, C-1TMP), 152.3 (2C, C-3TMP, C-5TMP), 170.3 (1C, CO2CH3), 172.7 (C-4-C=O), 178.1 (1C, C-1), 180.5 (1C, C-3). Exact mass (ESI): m/z = 552.1972 (calcd. 552.1977 for C28H30N3O9 [MH]+). IR (neat): ṽ [cm−1] = 3314 (m, OH), 2931, 2847 (w, C-Haliph.), 1708, 1674 (s, C=O), 1123 (s, C-O), 745 (s, C-Harom.).
  • (−)-18b [Rf = 0.35 (ethyl acetate/cyclohexane = 8:2)]: Yellow solid, mp 183 °C, yield of 37 mg (27%). C28H29N3O9 (551.6). Purity (HPLC): 93.2%, (tR = 16.0 min). Specific rotation: [ α ] D 20 = −115 (c = 1.3, THF). 1H NMR (600 MHz, DMSO-d6): δ (ppm) = 3.50 (dd, J = 9.5/7.8 Hz, 1H, 10a-H), 3.56 (s, 3H, 4-OCH3), 3.66 (s, 6H, 3-OCH3, 5-OCH3), 3.71 (s, 3H, CO2CH3), 3.82–3.89 (m, 1H, CHCH2OH), 3.94 (dt, J = 10.8/4.7 Hz, 1H, CHCH2OH), 4.03 (dd, J = 9.7/4.4 Hz, 1H, 3a-H), 4.62 (d, J = 4.6 Hz, 1H, 4-H), 4.62–4.65 (m, 1H, CHCH2OH), 4.75 (d, J = 7.8 Hz, 1H, 10-H), 5.83 (t, J = 5.3 Hz, 1H, CHCH2OH), 6.29 (s, 2H, C-2TMP, C-6TMP), 6.92 (ddd, J = 8.0/7.0/1.0 Hz, 1H, 8-H), 7.05 (ddd, J = 8.2/6.9/1.2 Hz, 1H, 7-H), 7.30 (dt, J = 8.1/0.9 Hz, 1H, 6-H), 7.36 (d, J = 7.9 Hz, 1H, 9-H), 9.15 (d, J = 8.1 Hz, 1H, NHamide), 10.58 (s, 1H, 5-H), 10.90 (s, 1H, 2-H). 13C NMR (151 MHz, DMSO-d6): δ (ppm) = 38.0 (1C, C-10), 38.2 (1C, C-4), 41.9 (1C, C-3a), 46.3 (1C, C-10a), 52.1 (1C, CO2CH3), 55.1 (1C, CHCH2OH), 55.7 (2C, 3-OCH3, 5-OCH3), 59.9 (1C, 4-OCH3), 60.8 (1C, CHCH2OH), 105.8 (2C, C-2TMP, C-6TMP), 111.0 (1C, C-6), 111.7 (1C, C-9b), 118.0 (1C, C-9), 118.8 (1C, C-8), 121.4 (1C, C-7), 125.6 (1C, C-9a), 130.9 (1C, C-4a), 136.0 (1C, C-5a), 136.1 (1C, C-4TMP), 136.8 (1C, C-1TMP), 152.2 (2C, C-3TMP, C-5TMP), 170.5 (1C, C-4-C=O), 170.6 (CO2CH3), 178.1 (1C, C-1), 180.3 (1C, C-3). Exact mass (ESI): m/z = 552.1972 (calcd. 552.1977 for C28H30N3O9 [MH]+). IR (neat): ṽ [cm−1] = 3309 (m, OH), 2927, 2850 (w, C-Haliph.), 1708, 1674 (s, C=O), 1123 (s, C-O), 745 (s, C-Harom.).
  • Methyl N-{[(3aR,4S,10R,10aR)-1,3-dioxo-10-(3,4,5-trimethoxyphenyl)-1,2,3,3a,4,5,10,10a-octahydropyrrolo[3,4-b]carbazol-4-yl]carbonyl}-(S)-methioninate ((-)-19b)
  • Molecules 30 00063 i018
  • Under N2, carboxylic acid 10 (136 mg, 0.30 mmol) and CDI (53.5 mg, 0.33 mmol) were dissolved in dry CH2Cl2 (10 mL) at room temperature. The mixture was stirred for 2 h. Then, (S)-methionine methyl ester HCl (120 mg, 0.60 mmol) was added. The mixture was stirred for 48 h at room temperature. After the completion of the transformation, the resulting suspension was filtered through Celite®, followed by rinsing with CH2Cl2 (40 mL). The filtrate was concentrated in vacuo and the residue was purified by flash column chromatography (ethyl acetate/cyclohexane = 6:4, Ø 2 cm, h = 20 cm, v = 10 mL). Yellow solid, mp 127 °C, yield of 39 mg (22%). C30H33N3O8S (595.7). TLC (ethyl acetate/cyclohexane = 6:4): Rf = 0.24. Purity (HPLC): 98.1%, (tR = 19.6 min). Specific rotation: [ α ] D 20 = −113 (c = 1.2, DMSO). 1H NMR (600 MHz, DMSO-d6): δ (ppm) = 2.02–2.07 (m, 1H, CH3SCH2CH2CH), 2.09 (s, 3H, SCH3), 2.11–2.17 (m, 1H, CH3SCH2CH2CH), 2.58–2.69 (m, 2H, CH3SCH2CH2CH), 3.55 (dd, J = 9.7/8.0 Hz, 1H, 10a-H), 3.57 (s, 3H, 4-OCH3), 3.67 (s, 6H, 3-OCH3, 5-OCH3), 3.76 (s, 3H, CO2CH3), 4.04 (dd, J = 9.6/5.3 Hz, 1H, 3a-H), 4.52 (d, J = 5.3 Hz, 1H, 4-H), 4.69 (ddd, J = 9.0/7.6/4.7 Hz, 1H, CH3SCH2CH2CH), 4.78 (d, J = 8.0 Hz, 1H, 10-H), 6.32 (s, 2H, 2-HTMP,6-HTMP), 6.95 (ddd, J = 8.0/7.0/1.0 Hz, 1H, 8-H), 7.07 (ddd, J = 8.2/7.0/1.2 Hz, 1H, 7-H), 7.36 (dt, J = 8.1/0.9 Hz, 1H, 6-H), 7.42 (d, J = 8.0 Hz, 1H, 9-H), 9.18 (d, J = 7.7 Hz, 1H, NHamide), 10.34 (s, 1H, 5-H), 10.97 (s, 1H, 2-H). 13C NMR (101 MHz, DMSO-d6): δ (ppm) = 14.6 (1C, SCH3), 29.5 (1C, CH3SCH2CH2CH), 30.7 (1C, CH3SCH2CH2CH), 38.0 (1C, C-10), 38.4 (1C, C-4), 42.1 (1C, C-3a), 46.0 (1C, C-10a), 51.6 (1C, CH3SCH2CH2CH), 52.7 (1C, CO2CH3), 55.8 (2C, 3-OCH3, 5-OCH3), 59.9 (1C, 4-OCH3), 105.8 (2C, C-2TMP, C-6TMP), 111.1 (1C, C-6), 112.1 (1C, C-9b), 118.1 (1C, C-9), 119.0 (1C, C-8), 121.6 (1C, C-7), 125.6 (1C, C-9a), 130.8 (1C, C-4a), 135.9 (1C, C-5a), 136.2 (1C, C-4TMP), 137.0 (1C, C-1TMP), 152.3 (2C, C-3TMP, C-5TMP), 170.3 (1C, COamide), 173.5 (1C, CO2CH3), 178.1 (1C, C-1), 180.3 (1C, C-3). Exact mass (ESI): m/z = 596.2062 (calcd. 566.2061 for C30H34N3O8S [MH]+). IR (neat): ṽ [cm−1] = 2978, 2889 (w, C-Haliph.), 1774, (w, C=O), 1713 (s, C=O), 1643 (w, C=O), 1173, 1123 (s, C-O), 745 (s, C-Harom.).
  • Methyl N-{[(3aS,4R,10S,10aS)-1,3-dioxo-10-(3,4,5-trimethoxyphenyl)-1,2,3,3a,4,5,10,10a-octahydropyrrolo[3,4-b]carbazol-4-yl]carbonyl}-(S)-histidinate∙HCl ((+(-20a HCl) and methyl N-{[(3aR,4S,10R,10aR)-1,3-dioxo-10-(3,4,5-trimethoxyphenyl)-1,2,3,3a,4,5,10,10a-octahydropyrrolo[3,4-b]carbazol-4-yl]carbonyl}-(S)-histidinate ((-)-20b)
  • Molecules 30 00063 i019
  • Carboxylic acid 10 (450 mg, 1.00 mmol), COMU® (471 mg, 1.10 mmol), and (S)-histidine methyl ester HCl (267 mg, 1.10 mmol) were dissolved in dry THF (20 mL) at room temperature. Then, DIPEA (426 mg, 3.30 mmol) was added dropwise. The mixture was stirred for 16 h at room temperature. After the completion of the transformation, ethyl acetate (100 mL) was added. The mixture was extracted with NaHCO3 solution (0.1 M in water, 4 × 50 mL) and saturated NaCl solution (1 × 50 mL). The organic layer was dried (Na2SO4), filtered, and concentrated in vacuo. The residue was purified by automatic flash column chromatography (cartridge: SNAP 100 g, flow rate of 50 mL/min, MeOH/CH2Cl2 = 2:98 → 10:90) to obtain the diastereomers 20a and 20b.
  • Then, 20a was dissolved in CH2Cl2 (10 mL) and HCl solution (2 M in Et2O, 5 mL) was added. The resulting suspension was filtered and the precipitate was washed with cold CH2Cl2 (2 × 10 mL) to give 20a∙HCl.
  • (+)-20a∙HCl [Rf = 0.43 (MeOH/CH2Cl2 = 10:90, free base)]: yellow solid, mp 253 °C, yield of 125 mg (20%). C31H32ClN5O8 (638.1). Purity (HPLC): 95.0%, (tR = 15.3 min). Specific rotation: [ α ] D 20 = +121 (c = 1.7, DMSO). 1H NMR (600 MHz, DMSO-d6): δ (ppm) = 3.27 (dd, J = 15.2/6.4 Hz, 1H, NHCHCH2), 3.34 (dd, J = 15.1/8.3 Hz, 1H, NHCHCH2), 3.53 (t, J = 8.9 Hz, 1H, 10a-H), 3.57 (s, 3H, 4-OCH3), 3.63 (s, 6H, 3-OCH3, 5-OCH3), 3.65 (s, 3H, CO2CH3), 3.85 (dd, J = 9.0/3.7 Hz, 1H, 3a-H), 4.52 (d, J = 3.8 Hz, 1H, 4-H), 4.67–4.75 (m, 1H, NHCHCH2), 4.72 (d, J = 8.2 Hz, 1H, 10-H), 6.25 (s, 2H, 2-HTMP, 6-HTMP), 6.88 (ddd, J = 8.0/7.1/1.0 Hz, 1H, 8-H), 7.04 (ddd, J = 8.1/7.0/1.2 Hz, 1H, 7-H), 7.20 (d, J = 7.9 Hz, 1H, 9-H), 7.39 (dt, J = 8.1/0.9 Hz, 1H, 6-H), 7.51 (s, 1H, 5-Himidaz.), 8.99 (s, 1H, 2-Himidaz.), 9.22 (d, J = 7.4 Hz, 1H, NHamide), 10.52 (s, 1H, 5-H), 10.91 (s, 1H, 2-H). A signal for the NHimidaz. proton is not observed in the spectrum. 13C NMR (101 MHz, DMSO-d6): δ (ppm) = 26.0 (1C, NHCHCH2), 37.7 (1C, C-4), 38.1 (1C, C-10), 42.8 (1C, C-3a), 45.9 (1C, C-10-a), 52.2 (1C, NHCHCH2), 52.3 (1C, CO2CH3), 55.7 (2C, 3-OCH3, 5-OCH3), 59.9 (1C, 4-OCH3), 106.1 (2C, C-2TMP, C-6TMP), 111.4 (1C, C-6), 111.4 (1C, C-9b), 117.2 (1C, C-5imidaz.) 118.2 (1C, C-9), 118.7 (1C, C-8), 121.5 (1C, C-7), 125.6 (1C, C-9a), 130.4 (1C, C-4a), 133.9 (1C, C-2imidaz.), 136.2 (1C, C-4TMP), 136.3 (1C, C-5a), 136.6 (1C, C-1TMP), 152.1 (2C, C-3TMP, C-5TMP), 170.8 (1C, COamide), 171.0 (1C, CO2CH3), 178.0 (1C, C-1), 179.8 (1C, C-3). A signal for the C-4imidaz. C-atom was not observed in the spectrum. Exact mass (ESI): m/z = 602.2251 (calcd. 602.2245 for C31H32N5O8 [MH]+). IR (neat): ṽ [cm−1] = 2978, 2886 (s, C-Haliph.), 1713 (s, C=O), 1686 (m, C=O), 1154, 1119 (s, C-O), 745 (s, C-Harom.).
  • (−)-20b [Rf = 0.32 (MeOH/CH2Cl2 = 10:90)]: Yellow solid, mp 233 °C, yield of 172 mg (29%). C31H31N5O8 (601.6). Purity (HPLC): 94.3%, (tR = 15.9 min). Specific rotation: [ α ] D 20 = −169 (c 1.5, DMSO). 1H NMR (600 MHz, DMSO-d6): δ (ppm) = 3.10 (dd, J = 14.8/9.3 Hz, 1H, NHCHCH2), 3.16 (dd, J = 14.9/4.2 Hz, 1H, NHCHCH2), 3.50 (dd, J = 9.5/7.8 Hz, 1H, 10a-H), 3.56 (s, 3H, 4-OCH3), 3.66 (s, 9H, 3-OCH3, 5-OCH3, CO2CH3), 4.03 (dd, J = 9.6/4.9 Hz, 1H, 3a-H), 4.29 (s broad, 1H, NHCHCH2), 4.53 (d, J = 5.0 Hz, 1H, 4-H), 4.75 (d, J = 7.8 Hz, 1H, 10-H), 6.31 (s, 2H, 2-HTMP, 6-HTMP), 6.93 (td, J = 7.5/7.1/0.9 Hz, 1H, 8-H), 7.03 (s, 1H, 5-Himidaz.), 7.06 (ddd, J = 8.2/7.0/1.1 Hz, 1H, 7-H), 7.37–7.43 (m, 2H, 6-H, 9-H), 7.80 (s, 1H, 2-Himidaz.), 9.36 (s, 1H, NHamide), 10.90 (s, 1H, 2-H), 11.95 (s, 1H, 5-H), 12.07 (s, 1H, τ-NHimidaz.). 13C NMR (101 MHz, DMSO-d6): δ (ppm) = 27.8 (1C, NHCHCH2), 38.1 (1C, C-10), 38.3 (1C, C-4), 42.0 (1C, C-3a), 46.2 (1C, C-10-a), 52.1 (1C, CO2CH3), 52.3 (1C, NHCHCH2), 55.8 (2C, 3-OCH3, 5-OCH3), 59.9 (1C, 4-OCH3), 105.8 (2C, C-2TMP, C-6TMP), 111.2 (1C, C-6), 111.8 (1C, C-9b), 113.7 (1C, C-5imidaz.), 117.9 (1C, C-9), 118.7 (1C, C-8), 121.5 (1C, C-7), 125.5 (1C, C-9a), 130.4 (1C, C-4a), 135.1 (1C, C-2imidaz.), 136.1 (1C, C-4TMP), 136.1 (1C, C-5a), 137.0 (1C, C-1TMP), 152.3 (2C, C-3TMP, C-5TMP), 170.1 (1C, COamide), 172.1 (1C, CO2CH3), 178.1 (1C, C-1), 180.2 (1C, C-3). A signal for the C-4imidaz. C-atom was not observed in the spectrum. Exact mass (ESI): m/z = 602.2254 (calcd. 602.2245 for C31H32N5O8 [MH]+). IR (neat): ṽ [cm−1] = 2978, 2886 (s, C-Haliph.), 1705, 1674 (s, C=O), 1153, 1125 (s, C-O), 745 (s, C-Harom.).
  • Ethyl (3aRS,4SR,10RS,10aRS)-10-(4-nitrophenyl)-1,3-dioxo-1,2,3,3a,4,5,10,10a-octahydropyrrolo[3,4-b]carbazole-4-carboxylate (21a)
  • Molecules 30 00063 i020
  • Under N2, indolylacetate 6 (205 mg, 1.01 mmol), maleimide (8a, 292 mg, 3.00 mmol), and 4-nitrobenzaldehyde (7b, 228 mg, 1.51 mmol) were dissolved in dry o-xylene (15 mL) in a pressure-resistant Schlenk tube. Crushed CuSO4 ∙ 5 H2O (26.4 mg, 0.11 mmol) was added to the solution and the mixture was heated to reflux for 40 h (oil bath temperature 180 °C). After cooling to room temperature, the mixture was diluted with CH2Cl2 until a clear solution formed. After filtration, the filter was washed with CH2Cl2 (3 × 10 mL). The filtrate was concentrated in vacuo. The residue was again dissolved in CH2Cl2 (2 mL) and adsorbed onto silica gel, followed by purification by automatic flash column chromatography (cartridge: SNAP 100g, flow rate of 50 mL/min, ethyl acetate/cyclohexane = 10:90 → 0:100). For further purification, the resulting solid was left stirring in Et2O (5 mL) for 30 min. The suspension was filtrated, washed with cold Et2O (3 × 10 mL), and dried under vacuum. Yellow solid, mp 262 °C, yield of 107 mg (25%). C23H19N3O6 (433.4). TLC (ethyl acetate/cyclohexane = 1:1): Rf = 0.26. Purity (HPLC): 94.9%, (tR = 20.1 min). 1H NMR (600 MHz, DMSO-d6): δ (ppm) = 1.31 (t, J = 7.1 Hz, 3H, COCH2CH3), 3.72 (t, J = 9.0 Hz, 1H, 10a-H), 4.09 (dd, J = 9.0/3.8 Hz, 1H, 3a-H), 4.22–4.33 (m, 2H, COCH2CH3), 4.56 (d, J = 3.7 Hz, 1H, 4-H), 4.99 (d, J = 8.9 Hz, 1H, 10-H), 6.83 (ddd, J = 7.9/6.8/1.0 Hz, 1H, 8-H), 6.98 (d, J = 7.8 Hz, 9H), 7.04 (ddd, J = 8.1/6.9/1.1 Hz, 1H, 7H), 7.25–7.30 (m, 2H, 2-HNO2Ph, 6-HNO2Ph), 7.35–7.39 (dt, J = 8.1/0.8 Hz, 1H, 6-H), 8.03–8.07 (m, 2H, 3-HNO2Ph, 5-HNO2Ph), 10.97 (s, 1H, 2-H), 11.10 (s, 1H, 5-H). 13C NMR (151 MHz, DMSO-d6): δ (ppm) = 14.0 (1C, COCH2CH3), 37.1 (1C, C-4), 37,4 (1C, C-10), 42.6 (1C, C-3a), 45.0 (1C, C-10a), 61.7 (1C, COCH2CH), 109.9 (1C, C-9b), 111.6 (1C, C-6), 118.1 (1C, C-9), 118.9 (1C, C-8), 121.7 (1C, C-7), 123.0 (2C, C-3NO2Ph, C-3NO2Ph), 125.2 (1C, C-9a), 129.2 (1C, C-4a), 130.2 (2C, C-2NO2Ph, C-6NO2Ph), 136.6 (1C, C-5a), 146.3 (1C, C-4NO2Ph), 149.1 (1C, C-1NO2Ph), 170.9 (1C, COCH2CH3), 177.5 (1C, C-1), 178.2 (1C, C-3). Exact mass (ESI): m/z = 434.1342 (calcd. 434.1347 for C23H20N3O6 [MH]+). IR (neat): ṽ [cm−1] = 2978, 2893 (w, C-Haliph.), 1720 (s, C=O), 1508, 1342 (s, N-O) 1141 (s, C-O), 745 (m, C-Harom.).
  • Ethyl (3aRS,4SR,10RS,10aRS)-2-methyl-10-(4-nitrophenyl)-1,3-dioxo-1,2,3,3a,4,5,10,10a-octahydropyrrolo[3,4-b]carbazole-4-carboxylate (21b)
  • Molecules 30 00063 i021
  • Under N2, indolylacetate 6 (101 mg, 0.50 mmol), N-methylmaleimide (8b, 281 mg, 2.53 mmol), and 4-nitrobenzaldehyde (7b, 132 mg, 0.87 mmol) were dissolved in dry o-xylene (15 mL) in a pressure-resistant Schlenk tube. Crushed CuSO4 ∙ 5 H2O (12.4 mg, 0.05 mmol) was added to the solution and the mixture was heated to reflux for 40 h (oil bath temperature of 180 °C). After cooling to room temperature, the mixture was filtered, and the filter was washed with CH2Cl2 (3 × 10 mL). The filtrate was concentrated in vacuo and the residue was purified by flash column chromatography (ethyl acetate/cyclohexane = 4:7, Ø 4 cm, h = 12 cm, v = 20 mL). Yellow solid, mp 237 °C, yield of 82 mg (40%). C24H21N3O6 (447.4). TLC (ethyl acetate/cyclohexane = 4:6): Rf = 0.21. Purity (HPLC): 95.3%, (tR = 21.3 min). 1H NMR (600 MHz, DMSO-d6): δ (ppm) = 1.30 (t, J = 7.1 Hz, 3H, OCH2CH3), 2.36 (s, 3H, NHCH3), 3.80 (t, J = 8.8 Hz, 1H, 10a-H), 4.10 (dd, J = 8.6/3.4 Hz, 1H, 3a-H), 4.16–4.36 (m, 2H, OCH2CH3), 4.62 (d, J = 3.4 Hz, 1H, 4-H), 5.01 (d, J = 8.9 Hz, 1H, 10-H), 6.82 (ddd, J = 8.0/7.0/1.0 Hz, 1H, 8-H), 6.93 (d, J = 8.2 Hz, 1H, 9-H), 7.03 (ddd, J = 8.2/7.0/1.3 Hz, 1H, 7-H), 7.17–7.25 (m, 2H, 2-HNO2Ph 6-HNO2Ph), 7.37 (dt, J = 8.1/0.9 Hz, 1H, 6-H), 7.98–8.10 (m, 3-HNO2Ph, 5-HNO2Ph), 11.14 (s, 1H, 5-H). 13C NMR (151 MHz, DMSO-d6): δ (ppm) = 14.0 (1C, OCH2CH3), 23.8 (1C, NHCH3), 37.0 (1C, C-4), 37.6 (1C, C-10), 41.6 (1C, C-3a), 44.0 (1C C-10a), 61.7 (1C, OCH2CH3), 109.6 (1C, C-9b), 111.5 (1C, C-6), 118.2 (1C, C-9), 118.9 (1C, C-8), 121.7 (1C, C-7), 122.9 (2C, C-3NO2Ph, C-5NO2Ph) 125.1 (1C, C-9a), 129.1 (1C, C-4a), 130.0 (2C, C-2NO2Ph, C-6NO2Ph), 136.6 (1C, C-5a), 146.3 (1C, C-4NO2Ph), 148.8 (1C, C-1NO2Ph), 170.8 (1C, COester) 176.2 (1C, C-1), 177.4 (1C, C-3). Exact mass (ESI): m/z = 446.1506 (calcd. 448.1503 for C24H22N3O6 [MH]+). IR (neat): ṽ [cm−1] = 2978 (w, C-Haliph.), 1782, (w, C=O), 1717 (s, C=O), 1196,1150 (s, C-O), 745 (m, C-Harom.).
  • Ethyl (3aRS,4SR,10RS,10aRS)-2-benzyl-10-(4-nitrophenyl)-1,3-dioxo-1,2,3,3a,4,5,10,10a-octahydropyrrolo[3,4-b]carbazole-4-carboxylate (21c)
  • Molecules 30 00063 i022
  • Under N2, indolylacetate 6 (104 mg, 0.52 mmol), N-benzylmaleimide (8c, 282 mg, 1.50 mmol), and 4-nitrobenzaldehyde (7b, 113 mg, 0.75 mmol) were dissolved in dry o-xylene (15 mL) in a pressure-resistant Schlenk tube. Crushed CuSO4 ∙ 5 H2O (12.9 mg, 0.05 mmol) was added to the solution and the mixture was heated to reflux for 24 h (oil bath temperature of 180 °C). The mixture was allowed to cool down to ambient temperature and CH2Cl2 (20 mL) was added until a clear solution formed. After filtration, the filter was washed with CH2Cl2 (3 × 10 mL). The filtrate was concentrated in vacuo. The residue was purified by flash column chromatography (ethyl acetate/CH2Cl2 = 2:98, Ø 3 cm, h = 22 cm, v = 20 mL). Yellow solid, mp 199 °C, yield of 109 mg (40%). C30H25N3O6 (523.5). TLC (ethyl acetate/CH2Cl2 = 2:98): Rf = 0.33. Purity (HPLC): 98.7%, (tR = 23.2 min). 1H NMR (600 MHz, DMSO-d6): δ (ppm) 1.33 (t, J = 7.1 Hz, 3H, OCH2CH3), 3.86 (t, J = 9.0 Hz, 1H, 10a-H), 4.15 (d, J = 14.8 Hz, 1H, NCH2Ph), 4.20 (d, J = 14.8 Hz, 1H, NCH2Ph), 4.24 (dd, J = 9.3/4.6 Hz, 1H, 3a-H), 4.26–4.40 (m, 2H, OCH2CH3), 4.62 (d, J = 4.5 Hz, 1H, 4-H), 5.04 (d, J = 8.7 Hz, 1H, 10-H), 6.83 (ddd, J = 8.1/7.1/1.4 Hz, 1H, 8-H), 6.88–6.95 (m, 2H, C-2benzyl, C-6benzyl), 7.02–7.08 (m, 5H, 7-H, 9-H, 3-Hbenzyl, 4-Hbenzyl, 5-Hbenzyl), 7.10–7.13 (m, 2H, 2-HNO2Ph, 6-HNO2Ph), 7.35–7.40 (m, 1H, 6-H), 7.75–7.79 (m, 2H, 3-HNO2Ph, 5-HNO2Ph), 11.07 (s, 1H, 5-H). 13C NMR (151 MHz, DMSO-d6): δ (ppm) = 14.0 (1C, OCH2CH3), 37.3 (1C, C-10), 37.6 (1C, C-4), 41.5 (1C, NCH2Ph), 41.6 (1C, C-3a), 43.8 (1C, C-10a), 61.9 (1C, OCH2CH3), 110.3 (1C, C-9b), 111.6 (1C, C-6), 118.0 (1C, C-9), 118.9 (1C, C-8), 121.7 (1C, C-7), 123.0 (2C, C-3NO2Ph, C-5NO2Ph), 125.1 (1C, C-9a), 127.1 (1C, C-4benzyl), 127.9 (2C, C-3benzyl, C-5benzyl), 128.0 (2C, C-2benzyl, C-6benzyl), 129.1 (1C, C-4a), 129.8 (2C, C-2NO2Ph, C-6NO2Ph), 135.3 (1C C-1benzyl), 136.5 (1C, C-5a), 146.1 (1C, C-4NO2Ph), 148.2 (1C, C-1NO2Ph), 170.9 (1C, C-4-C=O), 175.9 (1C, C-1), 177.7 (1C, C-3). Exact mass (ESI): m/z = 524.1794 (calcd. 524.1816 for C30H26N3O6 [MH]+). IR (neat): ṽ [cm−1] = 2978, 2928 (w, C-Haliph.), 1732, 1701 (s, C=O), 1342 (s, N-O) 1141 (s, C-Oester), 745, 689 (m, C-Harom.).
  • Ethyl (3aRS,4SR,10RS,10aRS)-10-(4-aminophenyl)-1,3-dioxo-1,2,3,3a,4,5,10,10a-octahydropyrrolo[3,4-b]carbazole-4-carboxylate∙HCl (22a.HCl)
  • Molecules 30 00063 i023
  • Aromatic nitro compound 21a (119 mg, 0.28 mmol) was dissolved in THF (20 mL), and saturated NH4Cl solution (20 mL) was added. Under vigorous stirring, a large excess of Zn dust (1.01 g, 15.4 mmol) was poured into the mixture, which was then stirred for 2 h at room temperature. After the completion of the transformation, saturated NaHCO3 solution (30 mL) was added, and the suspension was stirred for an additional 30 min at room temperature. The reaction mixture was filtered through Celite®, followed by rinsing with ethyl acetate (150 mL). The filtrate was poured into a separating funnel and the layers were separated. The aqueous layer was then extracted with ethyl acetate (2 × 50 mL). The combined organic layers were dried (Na2SO4), filtered, and concentrated in vacuo. The residue was purified by flash column chromatography (ethyl acetate/cyclohexane = 8:2, Ø 2 cm, h = 12 cm, v = 10 mL). For conversion into the HCl salt, the resulting solid (74 mg) was dissolved in CH2Cl2 (5 mL). HCl solution (1 M in Et2O, 3 mL) was added, and the suspension was concentrated in vacuo. Orange solid, mp 244 °C, yield of 75 mg (62%). C23H22ClN3O4 (439.9). TLC (ethyl acetate/cyclohexane = 8:2): Rf = 0.21 (free base). Purity (HPLC): 95.9%, (tR = 15.1 min). 1H NMR (600 MHz, DMSO-d6): δ (ppm) = 1.31 (t, J = 7.1 Hz, 3H, COCH2CH3), 3.62 (t, J = 8.9 Hz, 1H, 10a-H), 4.06 (dd, J = 9.1/3.9 Hz, 1H, 3a-H), 4.21–4.35 (m, 2H, COCH2CH3), 4.51 (d, J = 3.9 Hz, 1H, 4-H), 4.82 (d, J = 8.7 Hz, 1H, 10-H), 6.82 (ddd, J = 7.9/6.9/1.0 Hz, 1H, 8-H), 6.99 (d, J = 7.9 Hz, 1H, 9-H), 7.01–7.07 (m, 3H, 7-H, 3-HNH2Ph, 5-HNH2Ph), 7.10 (d, J = 8.1 Hz, 2H, 2-HNH2Ph, 6-HNH2Ph), 7.32–7.40 (m, 1H, 6-H), 9.79 (s, 3H, NH3+), 10.95 (s, 1H, 2-H), 11.01 (s, 1H, 5-H). 13C NMR (151 MHz, DMSO-d6): δ (ppm) = 14.0 (1C, COCH2CH3), 37.1 (1C, C-4), 37.2 (1C, C-10), 42.6 (1C, C-3a), 45.2 (1C, C-10a), 61.7 (1C, COCH2CH), 110.9 (1C, C-9b), 111.5 (1C, C-6), 118.1 (1C, C-9), 118.7 (1C, C-8), 121.6 (1C, C-7), 121.8 (2C, C-2NH2Ph, C-6NH2Ph), 125.2 (1C, C-9a), 129.0 (1C, C-4a), 130.0 (2C, C-3NH2Ph, C-5NH2Ph), 136.5 (1C, C-5a), 171.0 (1C, COCH2CH3), 177.6 (1C, C-1), 179.1 (1C, C-3). Signals for C-1NH2Ph and C-4NH2Ph C-atoms were not observed in the spectrum. Exact mass (ESI): m/z = 404.1606 (calcd. 404.1605 for C23H22N3O4 [MH]+). IR (neat): ṽ [cm−1] = 2978 (w, N-Hamine salt), 2983, 2862 (w, C-Haliph.), 1782 (w, C=O), 1701 (s, C=O), 1180 (s, C-O), 1153 (m, C-O), 741 (m, C-Harom.).
  • Ethyl (3aRS,4SR,10RS,10aRS)-10-(4-aminophenyl)-2-benzyl-1,3-dioxo-1,2,3,3a,4,5,10,10a-octahydropyrrolo[3,4-b]carbazole-4-carboxylate∙HCl (22c.HCl)
  • Molecules 30 00063 i024
  • Aromatic nitro compound 21c (263 mg, 0.50 mmol) was dissolved in THF (30 mL) and saturated NH4Cl solution (30 mL) was added. Under vigorous stirring, a large excess of Zn dust (5.00 g, 76.5 mmol) was poured into the mixture, which was then stirred for 2 h at room temperature. After the completion of the transformation, saturated NaHCO3 solution (30 mL) was added, and the suspension was stirred for an additional 30 min at room temperature. The reaction mixture was filtered through Celite®, followed by rinsing with ethyl acetate (80 mL). The filtrate was poured into a separating funnel and the layers were separated. The aqueous layer was then extracted with ethyl acetate (3 × 30 mL). The combined organic layers were dried (Na2SO4), filtered, and concentrated in vacuo. For conversion into the HCl salt, the resulting solid was dissolved in CH2Cl2 (5 mL). HCl solution (1 M in Et2O, 3 mL) was added, and the suspension was concentrated in vacuo. Orange solid, mp 206 °C, yield of 126 mg (48%). C30H28ClN3O4 (530.0). TLC (ethyl acetate/cyclohexane = 7:3): Rf = 0.38 (free base). Purity (HPLC): 95.9%, (tR = 18.7 min). 1H NMR (400 MHz, DMSO-d6): δ (ppm) = 1.30 (t, J = 7.1 Hz, 3H, COCH2CH3), 3.81 (t, J = 8.8 Hz, 1H, 10a-H), 3.98 (d, J = 15.1 Hz, 1H, NCH2Ph), 4.12 (d, J = 15.1 Hz, 1H, NCH2Ph), 4.20 (dd, J = 8.9/4.0 Hz, 1H, 3a-H), 4.22–4.34 (m, 2H, COCH2CH3), 4.57 (d, J = 4.0 Hz, 1H, 4-H), 4.88 (d, J = 8.5 Hz, 1H, 10-H), 6.82 (ddd, J = 8.0/7.0/1.0 Hz, 1H, 8-H), 6.93–7.09 (m, 8H, 7-H, 9-H, 2-HNH2Ph, 3-HNH2Ph, 5-HNH2Ph, 6-HNH2Ph, 3-Hbenzyl, 5-Hbenzyl), 7.18–7.23 (m, 3H, 2-Hbenzyl, 4-Hbenzyl, 6-Hbenzyl), 7.38 (dt, J = 8.1/1.1/0.9 Hz, 1H, 6-H), 9.77 (s, 3H, NH3+), 11.08 (s, 1H, 5-H). 13C NMR (101 MHz, DMSO-d6): δ (ppm) = 14.1 (1C, COCH2CH3), 37.51 (1C, C-4), 37.53 (1C, C-10), 41.1 (1C, NCH2Ph), 41.8 (1C, C-3a), 44.4 (1C, C-10a), 61.8 (1C, COCH2CH), 110.7 (1C, C-9b), 111.6 (1C, C-6, 118.2 (1C, C-9), 118.8 (1C, C-8), 121.6 (1C, C-7), 122.1 (2C, C-2NH2Ph, C-6NH2Ph), 125.2 (1C, C-9a), 127.2 (2C, C-3benzyl, C-5benzyl), 127.3 (1C, C-4benzyl), 128.3 (2C, C-2benzyl, C-6benzyl), 129.1 (1C, C-4a), 130.0 (2C, C-3NH2Ph, C-5NH2Ph), 135.5 (1C, C-1benzyl), 136.5 (1C, C-5a), 170.8 (1C, COCH2CH3), 176.2 (1C, C-1), 177.6 (1C, C-3). Signals for C-1NH2Ph and C-4NH2Ph C-atoms are not observed in the spectrum. Exact mass (APCI): m/z = 494.2064 (calcd. 494.2074 for C30H28N3O4 [MH]+). IR (neat): ṽ [cm−1] = 2978 (w, N-Hamine salt), 2978, 2808 (w, C-Haliph.), 1697 (s, C=O), 1184, 1146 (m, C-O), 745 (m, C-Harom.).
  • Ethyl (3aRS,4SR,10RS,10aRS)-2-benzyl-10-[4-(4-methoxybenzamido)phenyl]-1,3-dioxo-1,2,3,3a,4,5,10,10a-octahydropyrrolo[3,4-b]carbazole-4-carboxylate (23)
  • Molecules 30 00063 i025
  • Ammonium chloride 22c∙HCl (77.5 mg, 0.14 mmol) was suspended in dry CH2Cl2 (20 mL) followed by the addition of DIPEA (80 µL, 0.47 mmol) to obtain the free base. 4-methoxybenzoyl chloride (43.1 mg, 0.28 mmol) was added and the mixture was stirred for 2 h at room temperature. After the completion of the transformation, the solution was washed with HCl solution (0.1 M, 2 × 10 mL) and saturated NaCl solution (1x 10 mL). The organic layer was dried (Na2SO4), filtered, and concentrated in vacuo. The residue was purified by flash column chromatography (THF/CH2Cl2 = 3:97, Ø 3 cm, h = 14 cm, v = 10 mL). Yellow solid, mp 249 °C, yield of 76 mg (82%). C38H33N3O6 (627.7). TLC (THF/CH2Cl2 = 3:97): Rf = 0.19. Purity (HPLC): 94.5%, (tR = 22.8 min). 1H NMR (600 MHz, DMSO-d6): δ (ppm) = 1.32 (t, J = 7.1 Hz, 3H, COCH2CH3), 3.78 (t, J = 8.9 Hz, 1H, 10a-H), 3.83 (s, 3H, OCH3), 4.04 (d, J = 15.2 Hz, 1H, NCH2Ph), 4.19 (dd, J = 9.2/4.3 Hz, 1H, 3a-H), 4.20 (d, J = 15.1 Hz, 1H, NCH2Ph), 4.24–4.37 (m, 2H, COCH2CH3), 4.57 (d, J = 4.3 Hz, 1H, 4-H), 4.83 (d, J = 8.4 Hz, 1H, 10-H), 6.83–6.88 (m, 3H, 8-H, 2-HNH2Ph, 6-HNH2Ph), 6.89–6.93 (m, 2H, 2-Hbenzyl, 6-Hbenzyl), 7.01–7.09 (m, 4H, 7-H, 9-H, 3-HMeObz, 5-HMeObz), 7.09–7.18 (m, 3H, 3-Hbenzyl, 4-Hbenzyl, 5-Hbenzyl), 7.38 (dt, J = 8.3/0.9 Hz, 1H, 6-H), 7.48–7.54 (m, 2H, 3-HNH2Ph, 5-HNH2Ph), 7.90–7.96 (m, 2H, 2-HMeObz, 6-HMeObz), 9.98 (s, 1H, NHamide), 11.00 (s, 1H, 5-H). 13C NMR: (151 MHz, DMSO-d6) δ (ppm) = 14.0 (1C, COCH2CH3), 37.5 (2 × 1C, C-4, C-10), 41.2 (1C, NCH2Ph), 41.8 (1C, C-3a), 44.7 (1C, C-10a), 55.4 (1C, OCH3), 61.7 (1C, COCH2CH), 111.3 (1C, C-9b), 111.5 (1C, C-6), 113.6 (2C, C-3MeObz, C-5MeObz), 118.2 (1C, C-9), 118.8 (1C, C-8), 119.5 (2C, C-3NH2Ph, C-5NH2Ph), 121.5 (1C, C-7), 125.3 (1C, C-9a), 127.0 (1C, C-4benzyl), 127.0 (1C, C-1MeObz), 127.2 (2C, C-2benzyl, C-6benzyl) 128.1 (2C, C-3benzyl, C-5benzyl), 128.8 (2C, C-2NH2Ph, C-6NH2Ph), 128.9 (1C, C-4a), 129.5 (2C, C-2 MeObz, C-6 MeObz), 134.9 (1C, C-1NH2Ph), 135.5 (1C, C-1benzyl), 136.5 (1C, C-5a), 138.1 (1C, C-4NH2Ph), 161.8 (1C, C-4 MeObz), 164.7 (1C, COamide), 170.9 (1C, COCH2CH3), 176.2 (1C, C-1), 177.8 (1C, C-3). Exact mass (APCI): m/z = 628.2400 (calcd. 628.2442 for C38H34N3O6 [MH]+). IR (neat): ṽ [cm−1] = 2978, 2889 (m, C-Haliph.), 1775 (w, C=O), 1694 (s, C=O), 1643, 1605 (m, C=Caryl) 1184 (s, C-O), 1153 (m, C-O).

4.4. Microscale Thermophoresis Assay

The recombinant expression and purification [37,47] of human CK2α1–335 and human CK2β1−193, as well as the microscale thermophoresis (MST) assay to quantify the interaction of the two CK2 subunits, were performed as described previously [40,45]. Briefly, MST experiments followed the interaction between 20 nM of fluorescently labelled CK2β1–193 and 16 serial dilutions of CK2α1–335 (0.1526–5000 nM) in 25 mM Tris-HCl, 500 mM NaCl, pH 8.5, 1% (v/v) DMSO, and 0.05% (v/v) Tween 20. The compounds were investigated at a final concentration of 20, 50, or 100 µM. These experiments resulted in dissociation constants of KD and KD′ for the uninhibited and inhibited CK2 subunit interactions, respectively, which were then subjected to an unpaired Student’s t test to analyze for the statistical significance of the difference in the values. Data in the absence of inhibitors and in the presence of those compounds leading to a statistically significant increase in the dissociation constant (p ≤ 0.05) were analyzed again by setting KD to a global value and, in addition, using the equation KD′ = KD [1 + (ccompound/Ki)]. The global analysis gave a KD of 11 nM, which was in agreement with reported values [40,45] and provided the Ki values listed in Table 1. Data analysis and statistical evaluation were conducted with GraphPad Prism v.6 for Windows (GraphPad Software, La Jolla, CA, USA, www.graphpad.com).

4.5. Capillary Electrophoresis Assay

The capillary electrophoresis assay to determine the inhibition of the CK2 holoenzyme (CK2α2β2) was performed as described in refs. [40,46]. The CK2 holoenzyme was recombinantly expressed in E. coli BL21(DE3) and purified according to the protocol by Grankowski et al. [48]. Enzymatic activity was determined in the presence of 1 µg of CK2α2β2, 60 µM of ATP, and 114 µM of the substrate peptide RRRDDDSDDD. The assay buffer contained 60 mM NaCl and 10 mM MgCl2. Inhibition was determined in three independent experiments at a compound concentration of 10 µM, and the mean value and the standard deviation (SD) were calculated. When the holoenzyme inhibition exceeded 50% in comparison to the enzymatic activity without inhibitors, obtained with the same amount of DMSO, an IC50 value was determined three times independently.

Supplementary Materials

The following supporting information can be downloaded at: https://www.mdpi.com/article/10.3390/molecules30010063/s1, Supporting Information contain the formula to calculate the Ki values, 1H and 13C NMR spectra and HPLC chromatograms of the prepared compounds.

Author Contributions

L.K.: synthesis, chemical characterization, investigation; S.B.: CK2 inhibition, investigation, M.L. and M.S.: CK2α-CK2β interactions, investigations; J.J.: resources, supervision; M.P.: resources, writing—review and editing, supervision, project administration, funding acquisition; B.W.: resources, writing—original draft preparation, supervision, project administration, funding acquisition. All authors have read and agreed to the published version of the manuscript.

Funding

This research was funded by the Deutsche Forschungsgemeinschaft (DFG) with grants to B.W. (grant number: WU 176) and M.P. (grant number: PI 806/2-2), which is gratefully acknowledged. The APC was funded by discount voucher ba8c87d23218af92 (100.00%) to B.W.

Institutional Review Board Statement

Not applicable.

Informed Consent Statement

Not applicable.

Data Availability Statement

All data are included in the manuscript and the corresponding Supporting Information.

Conflicts of Interest

The authors have no conflicts of interest to declare.

Abbreviations

ATP: adenosine triphosphate; CE: capillary electrophoresis; CNS: central nervous system; GTP: guanosine triphosphate; MST: microscale thermophoresis; OCNDS: Okur–Chung neurodevelopmental syndrome; PPI: protein–protein interactions; PPII: protein–protein interaction inhibition; POBINDS: Poirier–Bienvenu neurodevelopmental syndrome; SD: standard deviation; SEM: standard error of the mean.

References

  1. Burnett, G.; Kennedy, E.P. The enzymatic phosphorylation of proteins. J. Biol. Chem. 1954, 211, 969–980. [Google Scholar] [CrossRef] [PubMed]
  2. Bradley, D.; Garand, C.; Belda, H.; Gagnon-Arsenault, I.; Treeck, M.; Elowe, S.; Landry, C.R. The substrate quality of CK2 target sites has a determinant role on their function and evolution. Cell Syst. 2024, 15, 544–562. [Google Scholar] [CrossRef]
  3. Litchfield, D.W. Protein kinase CK2: Structure, regulation and role in cellular decisions of life and death. Biochem. J. 2003, 369, 1–15. [Google Scholar] [CrossRef] [PubMed]
  4. Montenarh, M.; Götz, C. Protein kinase CK2 and ion channels (Review). Biomed. Rep. 2020, 13, 55. [Google Scholar] [CrossRef]
  5. Ahmad, K.A.; Wang, G.; Unger, G.; Slaton, J.; Ahmed, K. Protein kinase CK2—A key suppressor of apoptosis. Adv. Enzyme Regul. 2008, 48, 179–187. [Google Scholar] [CrossRef]
  6. Guerra, B.; Issinger, O.G. Protein kinase CK2 and its role in cellular proliferation, development and pathology. Electrophoresis 1999, 20, 391–408. [Google Scholar] [CrossRef]
  7. Montenarh, M. Protein kinase CK2 in DNA damage and repair. Transl. Cancer Res. 2016, 5, 49–63. [Google Scholar]
  8. Götz, C.; Montenarh, M. Protein kinase CK2 in development and differentiation. Biomed. Rep. 2017, 6, 127–133. [Google Scholar] [CrossRef] [PubMed]
  9. Niefind, K.; Guerra, B.; Ermakowa, I.; Issinger, O.G. Crystal structure of human protein kinase CK2: Insights into basic properties of the CK2 holoenzyme. EMBO J. 2001, 20, 5320–5331. [Google Scholar] [CrossRef] [PubMed]
  10. Martel, V.; Filhol, O.; Nueda, A.; Cochet, C. Dynamic Localization/Association of Protein Kinase CK2 Subunits in Living Cells. Ann. N. Y. Acad. Sci. 2002, 973, 272–277. [Google Scholar] [CrossRef] [PubMed]
  11. Bidwai, A.P.; Reed, J.C.; Glover, C.V. Phosphorylation of calmodulin by the catalytic subunit of casein kinase II is inhibited by the regulatory subunit. Arch. Biochem. Biophys. 1993, 300, 265–270. [Google Scholar] [CrossRef] [PubMed]
  12. Filhol, O.; Martiel, J.-L.; Cochet, C. Protein kinase CK2: A new view of an old molecular complex. EMBO Rep. 2004, 5, 351–355. [Google Scholar] [CrossRef] [PubMed]
  13. Okur, V.; Cho, M.T.; Henderson, L.; Retterer, K.; Schneider, M.; Sattler, S.; Niyazov, D.; Azage, M.; Smith, S.; Picker, J.; et al. De novo mutations in CSNK2A1 are associated with neurodevelopmental abnormalities and dysmorphic features. Hum. Genet. 2016, 135, 699–705. [Google Scholar] [CrossRef] [PubMed]
  14. Poirier, K.; Hubert, L.; Viot, G.; Rio, M.; Billuart, P.; Besmond, C.; Bienvenu, T. CSNK2B splice site mutations in patients cause intellectual disability with or without myoclonic epilepsy. Hum. Mutat. 2017, 38, 932–941. [Google Scholar] [CrossRef]
  15. Iimoto, D.S.; Masliah, E.; DeTeresa, R.; Terry, R.D.; Saitoh, T. Aberrant casein kinase II in Alzheimer’s disease. Brain Res. 1990, 507, 273–280. [Google Scholar] [CrossRef] [PubMed]
  16. Arriagada, P.V.; Growdon, J.H.; Hedley-Whyte, E.T.; Hyman, B.T. Neurofibrillary tangles but not senile plaques parallel duration and severity of Alzheimer’s disease. Neurology 1992, 42, 631. [Google Scholar] [CrossRef]
  17. Spillantini, M.G.; Crowther, R.A.; Jakes, R.; Hasegawa, M.; Goedert, M. alpha-Synuclein in filamentous inclusions of Lewy bodies from Parkinson’s disease and dementia with lewy bodies. Proc. Natl. Acad. Sci. USA 1998, 95, 6469–6473. [Google Scholar] [CrossRef] [PubMed]
  18. Ryu, M.Y.; Kim, D.W.; Arima, K.; Mouradian, M.M.; Kim, S.U.; Lee, G. Localization of CKII beta subunits in Lewy bodies of Parkinson’s disease. J. Neurol. Sci. 2008, 266, 9–12. [Google Scholar] [CrossRef]
  19. Chua, M.M.; Ortega, C.E.; Sheikh, A.; Lee, M.; Abdul-Rassoul, H.; Hartshorn, K.L.; Dominguez, I. CK2 in Cancer: Cellular and Biochemical Mechanisms and Potential Therapeutic Target. Pharmaceuticals 2017, 10, 18. [Google Scholar] [CrossRef] [PubMed]
  20. Trembley, J.H.; Wang, G.; Unger, G.; Slaton, J.; Ahmed, K. Protein kinase CK2 in health and disease: CK2: A key player in cancer biology. Cell. Mol. Life Sci. 2009, 66, 1858–1867. [Google Scholar] [CrossRef]
  21. D’Amore, C.; Borgo, C.; Sarno, S.; Salvi, M. Role of CK2 inhibitor CX-4945 in anti-cancer combination therapy—Potential clinical relevance. Cell Oncol. 2020, 43, 1003–1016. [Google Scholar] [CrossRef] [PubMed]
  22. Laramas, M.; Pasquier, D.; Filhol, O.; Ringeisen, F.; Descotes, J.L.; Cochet, C. Nuclear localization of protein kinase CK2 catalytic subunit (CK2alpha) is associated with poor prognostic factors in human prostate cancer. Eur. J. Cancer 2007, 43, 928–934. [Google Scholar] [CrossRef] [PubMed]
  23. Trembley, J.H.; Kren, B.T.; Afzal, M.; Scaria, G.A.; Klein, M.A.; Ahmed, K. Protein kinase CK2—Diverse roles in cancer cell biology and therapeutic promise. Mol. Cell. Biochem. 2023, 478, 899–926. [Google Scholar] [CrossRef]
  24. Wang, G.; Unger, G.; Ahmad, K.A.; Slaton, J.W.; Ahmed, K. Downregulation of CK2 induces apoptosis in cancer cells--a potential approach to cancer therapy. Mol. Cell. Biochem. 2005, 274, 77–84. [Google Scholar] [CrossRef] [PubMed]
  25. Cozza, G.; Pinna, L.A.; Moro, S. Protein kinase CK2 inhibitors: A patent review. Expert Opin. Ther. Pat. 2012, 22, 1081–1097. [Google Scholar] [CrossRef]
  26. Cozza, G.; Bortolato, A.; Moro, S. How druggable is protein kinase CK2? Med. Res. Rev. 2010, 30, 419–462. [Google Scholar] [CrossRef] [PubMed]
  27. Chen, Y.; Wang, Y.; Wang, J.; Zhou, Z.; Cao, S.; Zhang, J. Strategies of Targeting CK2 in Drug Discovery: Challenges, Opportunities, and Emerging Prospects. J. Med. Chem. 2023, 66, 2257–2281. [Google Scholar] [CrossRef] [PubMed]
  28. Grygier, P.; Pustelny, K.; Nowak, J.; Golik, P.; Popowicz, G.M.; Plettenburg, O.; Dubin, G.; Menezes, F.; Czarna, A. Silmitasertib (CX-4945), a Clinically Used CK2-Kinase Inhibitor with Additional Effects on GSK3beta and DYRK1A Kinases: A Structural Perspective. J. Med. Chem. 2023, 66, 4009–4024. [Google Scholar] [CrossRef] [PubMed]
  29. Perera, Y.; Farina, H.G.; Gil, J.; Rodriguez, A.; Benavent, F.; Castellanos, L.; Gomez, R.E.; Acevedo, B.E.; Alonso, D.F.; Perea, S.E. Anticancer peptide CIGB-300 binds to nucleophosmin/B23, impairs its CK2-mediated phosphorylation, and leads to apoptosis through its nucleolar disassembly activity. Mol. Cancer Ther. 2009, 8, 1189–1196. [Google Scholar] [CrossRef]
  30. Borad, M.J.; Bai, L.-Y.; Richards, D.; Mody, K.; Hubbard, J.; Rha, S.Y.; Soong, J.; McCormick, D.; Tse, E.; O’Brien, D.; et al. Silmitasertib plus gemcitabine and cisplatin first-line therapy in locally advanced/metastatic cholangiocarcinoma: A Phase 1b/2 study. Hepatology 2023, 77, 760–773. [Google Scholar] [CrossRef] [PubMed]
  31. Schnitzler, A.; Gratz, A.; Bollacke, A.; Weyrich, M.; Kuckländer, U.; Wünsch, B.; Götz, C.; Niefind, K.; Jose, J. A pi-Halogen Bond of Dibenzofuranones with the Gatekeeper Phe113 in Human Protein Kinase CK2 Leads to Potent Tight Binding Inhibitors. Pharmaceuticals 2018, 11, 23. [Google Scholar] [CrossRef]
  32. Rumler, H.; Schmithals, C.; Werner, C.; Bollacke, A.; Aichele, D.; Götz, C.; Niefind, K.; Wünsch, B.; Jose, J. Discovery of 7,9-Dibromodihydrodibenzofuran as Potent CK2 inhibitor: Synthesis, Biological Evaluation and Structural Studies on E-/Z isomers. ACS Pharmacol. Translat. Sci. 2024, 7, 3846–3866. [Google Scholar] [CrossRef]
  33. Garuti, L.; Roberti, M.; Bottegoni, G. Non-ATP Competitive Protein Kinase Inhibitors. Curr. Med. Chem. 2010, 17, 2804–2821. [Google Scholar] [CrossRef] [PubMed]
  34. Kufareva, I.; Bestgen, B.; Brear, P.; Prudent, R.; Laudet, B.; Moucadel, V.; Ettaoussi, M.; Sautel, C.F.; Krimm, I.; Engel, M.; et al. Discovery of holoenzyme-disrupting chemicals as substrate-selective CK2 inhibitors. Sci. Rep. 2019, 9, 15893. [Google Scholar] [CrossRef]
  35. Laudet, B.; Barette, C.; Dulery, V.; Renaudet, O.; Dumy, P.; Metz, A.; Prudent, R.; Deshiere, A.; Dideberg, O.; Filhol, O.; et al. Structure-based design of small peptide inhibitors of protein kinase CK2 subunit interaction. Biochem. J. 2007, 408, 363–373. [Google Scholar] [CrossRef] [PubMed]
  36. Iegre, J.; Brear, P.; Baker, D.J.; Tan, Y.S.; Atkinson, E.L.; Sore, H.F.; O’ Donovan, D.H.; Verma, C.S.; Hyvönen, M.; Spring, D.R. Efficient development of stable and highly functionalised peptides targeting the CK2α/CK2β protein-protein interaction. Chem. Sci. 2019, 10, 5056–5063. [Google Scholar] [CrossRef] [PubMed]
  37. Lindenblatt, D.; Horn, M.; Götz, C.; Niefind, K.; Neundorf, I.; Pietsch, M. Design of CK2β-Mimicking Peptides as Tools to Study the CK2α/CK2β Interaction in Cancer Cells. ChemMedChem 2019, 14, 833–841. [Google Scholar] [CrossRef]
  38. Brear, P.; North, A.; Iegre, J.; Hadje Georgiou, K.; Lubin, A.; Carro, L.; Green, W.; Sore, H.F.; Hyvönen, M.; Spring, D.R. Novel non-ATP competitive small molecules targeting the CK2 α/β interface. Bioorg. Med. Chem. 2018, 26, 3016–3020. [Google Scholar] [CrossRef] [PubMed]
  39. Laudet, B.; Moucadel, V.; Prudent, R.; Filhol, O.; Wong, Y.-S.; Royer, D.; Cochet, C. Identification of chemical inhibitors of protein-kinase CK2 subunit interaction. Mol. Cell. Biochem. 2008, 316, 63–69. [Google Scholar] [CrossRef]
  40. Kröger, L.; Daniliuc, C.G.; Ensan, D.; Borgert, S.; Nienberg, C.; Lauwers, M.; Steinkrüger, M.; Jose, J.; Pietsch, M.; Wünsch, B. Synthesis and SAR of tetracyclic inhibitors of protein kinase CK2 derived from furocarbazole W16. ChemMedChem 2020, 15, 871–881. [Google Scholar] [CrossRef]
  41. Lipinski, C.A.; Lombardo, F.; Dominy, W.; Feeney, P.J. Experimental and computational approaches to estimate solubility and permeability in drug discovery and development settings. Adv. Drug Del. Rev. 2001, 46, 3–26. [Google Scholar] [CrossRef]
  42. Royer, D.; Wong, Y.-S.; Plé, S.; Chiaroni, A.; Diker, K.; Lévy, J. Diastereodivergence and appendage diversity in the multicomponent synthesis of aryl-pyrrolo-tetrahydrocarbazoles. Tetrahedron 2008, 64, 9607–9618. [Google Scholar] [CrossRef]
  43. Kröger, L.; Wünsch, B. Stereochemistry of the Levy reaction. Eur. J. Org. Chem. 2018, 45, 6297–6303. [Google Scholar] [CrossRef]
  44. Sperry, J.B.; Minteer, C.J.; Tao, J.Y.; Johnson, R.; Duzguner, R.; Hawksworth, M.; Oke, S.; Richardson, P.F.; Barnhart, R.; Bill, D.R.; et al. Thermal Stability Assessment of Peptide Coupling Reagents Commonly Used in Pharmaceutical Manufacturing. Org. Process Res. Dev. 2018, 22, 1262–1275. [Google Scholar] [CrossRef]
  45. Pietsch, M.; Viht, K.; Schnitzler, A.; Ekambaram, R.; Steinkrüger, M.; Enkvist, E.; Nienberg, C.; Nickelsen, A.; Lauwers, M.; Jose, J.; et al. Unexpected CK2β-antagonistic functionality of bisubstrate inhibitors targeting protein kinase CK2. Bioorg. Chem. 2020, 96, 103608. [Google Scholar] [CrossRef]
  46. Gratz, A.; Götz, C.; Jose, J. A CE-based assay for human protein kinase CK2 activity measurement and inhibitor screening. Electrophoresis 2010, 31, 634–640. [Google Scholar] [CrossRef]
  47. Raaf, J.; Brunstein, E.; Issinger, O.G.; Niefind, K. The interaction of CK2α and CK2β, the subunits of protein kinase CK2, requires CK2β in a preformed conformation and is enthalpically driven. Protein Sci. 2008, 17, 2180–2186. [Google Scholar] [CrossRef]
  48. Grankowski, N.; Boldyreff, B.; Issinger, D.G. Isolation and characterization of recombinant human casein kinase II subunits α and β from bacteria. Eur. J. Biochem. 1991, 198, 25–30. [Google Scholar] [CrossRef] [PubMed]
Figure 1. Silmitasertib (1, CX-4945) and dibenzofurans 2 inhibit CK2 in an ATP competitive manner. CAM187 (3) interacts selectively with the CK2α subunit, inhibiting its association with the CK2β subunit but barely interfering with substrate phosphorylation. In contrast, the tetracyclic compounds 4 (W16) and 5 prevent the CK2α/CK2β association and modulate the kinase activity.
Figure 1. Silmitasertib (1, CX-4945) and dibenzofurans 2 inhibit CK2 in an ATP competitive manner. CAM187 (3) interacts selectively with the CK2α subunit, inhibiting its association with the CK2β subunit but barely interfering with substrate phosphorylation. In contrast, the tetracyclic compounds 4 (W16) and 5 prevent the CK2α/CK2β association and modulate the kinase activity.
Molecules 30 00063 g001
Scheme 1. Synthesis of racemic cis,cis,trans-configured pyrrolocarbazole derivatives with various 4-carboxamides. Reagents and reaction conditions: (a) CuSO4.5H2O, o-xylene, reflux (pressure-resistant Schlenk tube), 16 h, 79% (9a), 83% (9b). (b) 9a: NaOH, H2O, THF, rt, 30 min, 96%. (c) R2NH, COMU®, DIPEA, THF or EtOAc, 0–20 °C, 1–4 h, 49% (11), 84% (12), 71% (13), 52% (14), 12% (15), 66% (16), 23% (17). The formulas 917 show only the relative configuration of one enantiomer of the racemic mixtures.
Scheme 1. Synthesis of racemic cis,cis,trans-configured pyrrolocarbazole derivatives with various 4-carboxamides. Reagents and reaction conditions: (a) CuSO4.5H2O, o-xylene, reflux (pressure-resistant Schlenk tube), 16 h, 79% (9a), 83% (9b). (b) 9a: NaOH, H2O, THF, rt, 30 min, 96%. (c) R2NH, COMU®, DIPEA, THF or EtOAc, 0–20 °C, 1–4 h, 49% (11), 84% (12), 71% (13), 52% (14), 12% (15), 66% (16), 23% (17). The formulas 917 show only the relative configuration of one enantiomer of the racemic mixtures.
Molecules 30 00063 sch001
Scheme 2. Synthesis of enantiomerically pure cis,cis,trans-configured pyrrolocarbazole derivatives 1820 coupled with amino acids. Reagents and reaction conditions: (a) COMU®, DIPEA, DMF, 0 °C, 2 h, 27% (18a), 27% (18b). (b) CDI, CH2Cl2, rt, 48 h, 22% (19b). (c) COMU®, DIPEA, THF, rt, 16 h, 20% (20a.HCl), 29% (20b). The formulas 1820 show the absolute configuration of enantiomerically pure pyrrolocarbazoles.
Scheme 2. Synthesis of enantiomerically pure cis,cis,trans-configured pyrrolocarbazole derivatives 1820 coupled with amino acids. Reagents and reaction conditions: (a) COMU®, DIPEA, DMF, 0 °C, 2 h, 27% (18a), 27% (18b). (b) CDI, CH2Cl2, rt, 48 h, 22% (19b). (c) COMU®, DIPEA, THF, rt, 16 h, 20% (20a.HCl), 29% (20b). The formulas 1820 show the absolute configuration of enantiomerically pure pyrrolocarbazoles.
Molecules 30 00063 sch002
Scheme 3. Synthesis of racemic cis,cis,trans-configured pyrrolocarbazole derivatives with extended π-systems. Reagents and reaction conditions: (a) CuSO4.5H2O, o-xylene, 180 °C (pressure-resistant Schlenk tube), 24–40 h, 25% (21a), 40% (21b), 40% (21c). (b) Zn, THF, NH4Cl, rt, 2 h, 62% (22a.HCl), 48% (22c.HCl). (c) 4-Methoxybenzoyl chloride, DIPEA, CH2Cl2, rt, 2 h, 82%. The formulas 21–23 show only the relative configuration of one enantiomer of the racemic mixtures.
Scheme 3. Synthesis of racemic cis,cis,trans-configured pyrrolocarbazole derivatives with extended π-systems. Reagents and reaction conditions: (a) CuSO4.5H2O, o-xylene, 180 °C (pressure-resistant Schlenk tube), 24–40 h, 25% (21a), 40% (21b), 40% (21c). (b) Zn, THF, NH4Cl, rt, 2 h, 62% (22a.HCl), 48% (22c.HCl). (c) 4-Methoxybenzoyl chloride, DIPEA, CH2Cl2, rt, 2 h, 82%. The formulas 21–23 show only the relative configuration of one enantiomer of the racemic mixtures.
Molecules 30 00063 sch003
Table 1. Inhibition of the CK2α/CK2β association by the tetracyclic pyrrolocarbazoles 923 determined in the MST assay compared with the activity of the lead compound W16 (4).
Table 1. Inhibition of the CK2α/CK2β association by the tetracyclic pyrrolocarbazoles 923 determined in the MST assay compared with the activity of the lead compound W16 (4).
Molecules 30 00063 i001
Compd.RR′Conc. Test Compd.
(µM)
CK2α/CK2β Interaction
KD′ [nM] a
Inhibition of CK2α/CK2β Interaction
Ki [µM]
(±)-9a [40]OEtH10059 ± 2532 d
(±)-9bOEtCH32014 ± 6 bn.s.
(±)-10 [40]OHH100758 ± 3381.9 d
(±)-11NHCH3H50132 ± 436.0
(±)-12NHCH2C6H5H5062 ± 1914
(±)-13NHCH2-4-ClC6H4H5017 ± 3 cn.s.
(±)-14NH(CH2)2-indol-3-ylH50158 ± 173.8
(±)-15Molecules 30 00063 i002H5089 ± 137.4
(±)-16Molecules 30 00063 i003H5072 ± 129.7
(±)-17Molecules 30 00063 i004H5093 ± 137.1
(+)-18aCH2OHH5072 ± 29.1
(–)-19bCH2CH2SCH3
(S-RSRR-config.)
H5094 ± 247.7
(+)-20aMolecules 30 00063 i005H50101 ± 46.1
(–)-20bMolecules 30 00063 i006
(S-RSRR-config.)
H2029 ± 7 bn.s.
(±)-21aNO2H10020 ± 10 cn.s.
(±)-22aNH2H10031 ± 11 cn.s.
(±)-22cNH2Bn10025 ± 15 cn.s.
(±)-23NHC(=O)arylBn10024 ± 9 cn.s.
(+)-4 (W16) [40] 10061 ± 1731 d
a Mean ± SEM values of 2–4 separate experiments resulting from a global analysis of all included data sets in Table 1 and in ref. [40] where KD′ values were significantly different (unpaired Student’s t-test, p ≤ 0.05) from the KD value of 12 ± 1 nM (n = 4) for the uninhibited CK2α/CK2β interaction. A global value of KD = 11 ± 7 nM (n = 4) was calculated in this global analysis. b,c KD′ values were not included in the global analysis. An unpaired Student’s t-test showed each KD′ value to be non-significantly different (p > 0.05) from a KD value of 20 ± 9 nM (n = 3) b or 12 ± 1 nM (n = 4) c for the uninhibited CK2α/CK2β interaction. d Ki values in ref. [40] were 32 µM ((±)-9a), 1.8 µM ((±)-10), and 31 µM ((+)-4). n.s.: not significant.
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Kröger, L.; Borgert, S.; Lauwers, M.; Steinkrüger, M.; Jose, J.; Pietsch, M.; Wünsch, B. Structure–Activity Relationship Studies of Tetracyclic Pyrrolocarbazoles Inhibiting Heterotetrameric Protein Kinase CK2. Molecules 2025, 30, 63. https://doi.org/10.3390/molecules30010063

AMA Style

Kröger L, Borgert S, Lauwers M, Steinkrüger M, Jose J, Pietsch M, Wünsch B. Structure–Activity Relationship Studies of Tetracyclic Pyrrolocarbazoles Inhibiting Heterotetrameric Protein Kinase CK2. Molecules. 2025; 30(1):63. https://doi.org/10.3390/molecules30010063

Chicago/Turabian Style

Kröger, Lukas, Sebastian Borgert, Miriam Lauwers, Michaela Steinkrüger, Joachim Jose, Markus Pietsch, and Bernhard Wünsch. 2025. "Structure–Activity Relationship Studies of Tetracyclic Pyrrolocarbazoles Inhibiting Heterotetrameric Protein Kinase CK2" Molecules 30, no. 1: 63. https://doi.org/10.3390/molecules30010063

APA Style

Kröger, L., Borgert, S., Lauwers, M., Steinkrüger, M., Jose, J., Pietsch, M., & Wünsch, B. (2025). Structure–Activity Relationship Studies of Tetracyclic Pyrrolocarbazoles Inhibiting Heterotetrameric Protein Kinase CK2. Molecules, 30(1), 63. https://doi.org/10.3390/molecules30010063

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