2.5.1. Studies on Change in pH, Dry Mycelial Weight, and Optical Density
The biodegradation capacity of fungal isolate B (PDB-B) and a fungal consortium (C) was determined under two different conditions in liquid medium (denoted as LNM-B, LNM-C), and MSM (MSM-B, MSM-C), by measuring the change in biomass, pH, and optical density. No change was observed in the pH and optical density of the LNM and MSM control samples.
Figure 2 compares the change in dry mycelia between different media, the fungal isolate B and the fungal consortium. It can be observed that maximum dry mycelial weight was observed for fungal isolate B grown in PDB.
Figure 3 and
Figure 4 show the change in optical density and pH of the fungal medium inoculated with B and the fungal consortium at 500 mg/L of cypermethrin. Again, the fungal isolate B grown in PDB does not exhibit a change in pH beyond 3.5 to 4, compared to the variations observed in the other inoculum.
The initial findings indicate a pronounced increase in biomass for fungal isolate B across both media types, with a peak observed around day 6. This growth phase is interpreted as indicative of active adaptation and proliferation of the fungal isolate within the provided nutrient environments. Subsequent fluctuations in biomass are attributed to a complex interplay between growth-promoting factors and constraints such as nutrient depletion and the accumulation of metabolic by-products, underscoring the dynamic equilibrium between microbial expansion and environmental limitations.
The richer nutrient profile of PDB is hypothesized to facilitate more robust growth compared to MSM, although this is counterbalanced by more pronounced fluctuations post-peak, likely due to accelerated nutrient consumption and waste product accumulation. The introduction of consortium cultures in both media types reveals additional complexities in biomass dynamics, with potential synergistic or antagonistic interactions among the constituent organisms influencing overall growth patterns. These interactions may account for phases of biomass stabilization or abrupt shifts, highlighting the intricate relationships within microbial communities.
The number of fungal spores is quantified by optical density at a wavelength of 700 nm or greater, as indicated in the research conducted by Morris and Nicholls (1978). Optical density (OD) measurements at wavelengths of 700 nm or higher are used to estimate fungal spore concentrations in water suspensions, providing a reliable method for assessing spore concentrations of various fungal species like Penicillium digitatum, Penicillium italicum, and Geotrichum candidum. However, in the case of filamentous fungi, OD reading can be influenced by factors such as the length and branching pattern of hyphae, the presence of conidia (spores), and the aggregation of mycelial masses. These factors can lead to significant variability in OD readings resulting in conflicts with the actual biomass present, and dry biomass values.
2.5.2. Analysis of Degradation Efficiency and Products by GC-MS
Batch studies of fungal isolates and consortium in liquid medium potato dextrose broth and minimal salt medium are indicated as LNM-B, LNM-C, MSM-B, MSM-C, and soil microcosm studies are indicated as Soil-B and Soil-C. The chromatogram of the GC-MS analysis (
Figure 5,
Figure 6,
Figure 7,
Figure 8,
Figure 9 and
Figure 10) of the samples and the control provides a stark difference between the retention times of the cluster of peaks in the control and test samples, indicating the degradation process and the presence of degraded metabolites, and the absence of cypermethrin in all samples confirms biodegradation.
Table 2 and
Table 3 present the metabolites found in the control and samples LNM-B, LNM-C, MSM-B, MSM-C, Soil-B, and Soil-C. Key derivatives of cypermethrin such as α-methyl-benzenemethanol, 1-phenyl-ethanone, ethenyl-benzene, 1-phenylethyl ester formic acid, (3-methylphenyl) methyl ester formic acid, (3-methylphenyl) methanol, isopropyl ether, ethyl-benzene, α-hydroxy-3-phenoxy-benzeneacetonitrile, and phenol were found in the samples. It can be observed that α-methyl-benzenemethanol is present in all test samples in large quantities in decreasing order of LNM-B > MSM-B > LNM-C > MSM-C. 1-phenylethyl ester formic acid and (3-methylphenyl) methyl ester formic acid is also observed in all test samples, but not in large quantities, with a percentage area in the range between 0.06 and 0.15. Fungal strain B as well as consortium grown in LNM supplemented with cypermethrin showed the presence of (3-methylphenyl) methanol and isopropyl ether, while these were absent in both MSM media. Similarly, the fungal consortium grown in MSM exhibited the presence of ethenyl benzene, while all other samples displayed fragments of ethylbenzene.
Furthermore, except for the fungal consortium grown in LNM supplemented with cypermethrin, all other samples MSM-C, MSM-B, and LNM-B revealed the presence of 1-phenyl-ethanone, phenol, and 1-phenylethanol, respectively. The Soil-B test sample expresses an extra mass fragment that is phenol. Residual cypermethrin and 3-phenoxybenzaldehyde are present in Soil-B and Soil-C samples, in similar concentrations.
The degradation pathway of both fungal strain B and the fungal consortium was studied in both potato dextrose broth (LNM), as well as mineral salt medium (MSM), at the end of a 30-day degradation period. The most commonly studied cypermethrin biodegradation pathway begins with ester hydrolysis which is the initial phase in most pyrethroid metabolic pathways [
42]. The ester hydrolysis produces carboxylate, 3-(2,2-dichloroethenyl)-2,2-dimethylcyclopropanecarboxylate and cyano-3-phenoxybenzyl alcohol, which contains a cyanohydrin functional group that is unstable in water. HCN is removed from cyanohydrin in a nonenzymatic reaction or by a pyrethroid hydrolase enzyme resulting in the production of 3-phenoxybenzaldehyde (3-PBA) that is the most common microbial byproduct of cypermethrin biodegradation [
43]. Then 3-phenoxybenzaldehyde is further broken down into 3,4-dihydroxybenzoate and phenol through the permethrin pathway, and 3-(2,2-dichloroethenyl)-2,2-dimethylcyclopropanecarboxylate is broken down to release CO
2.
However, in our GC-MS analysis, all test samples showed high concentrations of α-methyl-benzenemethanol (1-Phenylethanol) (refer to
Supplementary Figures S1–S4). GC-MS analysis of LNM-C, MSM-B, and LNM-B revealed the presence of 1-phenylethanol and ethylbenzene. Several fungal strains
Botrytis cinerea,
Trametes versicolor,
Mortierella isabelline,
Cunninghamella echinulata var.
elegans,
Cladophialophora sp.,
Helminthosporium, and
Colletotrichum acutatum were found to be capable of the conversion of ethylbenzene and several acetophenone derivatives to their respective optically active 1-phenylethanols [
44,
45]. Certain fungal strains including
C. elegans and
M. isabellina were also found to produce 2-phenylethanol as derivatives [
46]. Although there is limited literature on metabolic oxidations of cypermethrin to ethylbenezene, it can be suggested that the fungal consortium is capable of oxidizing cypermethrin to ethylbenzene because of the lack of cypermethrin in the test sample. The presence of a high concentration of 1-phenylethanol and sufficient ethylbenzene is indicative of the presence of an enzyme responsible for benzylic hydroxylation. These biotransformations are often propagated by hydroxylases. Moreover, nonspecific fungal peroxygenases selectively shift the peroxide-borne oxygen to the carbon skeleton of diverse substrates, including pesticides. These enzymes can catalyze reactions such as one-electron oxidations, hydroxylations, dealkylations, epoxidations, inorganic halides, and oxidations of organic heteroatoms. The wide array of substrates catalysed by these enzymes and their by-products have been observed to be quite similar to that of classical heme peroxidases and cytochrome P450 monooxygenases [
47]. It is our assumption that these enzymes could be involved in the biotransformation reactions of cypermethrin. More studies are needed to decipher enzyme-substrate interactions.
In contrast, in the MSM-C chromatogram, 1-phenylethanol, acetophenone, and ethenylbenzene were found at high concentrations. Fungi have been studied for their enantioselective biological reduction of acetophenone to its derivatives. Live biomass of
Trichothecium sp. was found to act as a good biocatalyst for reduction of acetphenone derivatives to their corresponding alcohols [
48]. Similarly, the fungal isolate
Trichothecium roseum was also found to produce (R)-1-phenylethanols by the bioconversion of acetophenones [
49]. A similar ability of
Aspergillus species was observed to asymmetrically reduce acetophenone. A fungal strain
A. glaucus MA0200 reduced acetophenone to phenol [
50]. The biodegradation of acetophenone to phenol is catalyzed by acetophenone monooxygenase and alcohol dehydrogenases releasing a pungent flavor. However, the role of different fungal species in the biotransformation of acetophenone derivatives should be further studied to derive the cypermethrin pathway [
51]. The bioproduction of enantiomerically pure secondary chiral alcohols such as (R)-1-phenylethanol are industrially relevant as they are biosynthetic precursors for several bioactive natural products such as pharmaceuticals, agrochemicals, hormones, and proteins. Biocatalysis has economic relevance in the circular economic integration of concepts such as biorefinery and waste biomass conversion of agroindustrial waste into bioproducts. This bioreduction property of the fungal consortium could be further studied for industrial applications.
In addition to these, (3-methylphenyl) methanol and isopropyl ether were also found in the LNM-B and LNM-C chromatogram at average compositions. The role of (3-methylphenyl) methanol and isopropyl ether, in the biodegradation pathway of cypermethrin is unknown. Moreover, ethenylbenzene, which is found only in MSM-C, is also called styrene.
Aspergillus niger CGMCC 0496 has been shown to enantioselectively bio-hydrolyze various substituted styrene oxides [
52].
Similarly, among all samples, 1-phenylethyl ester formic acid and (3-methylphenyl) methyl ester formic acid were found at minimal concentrations. The role of these compounds in the cypermethrin pathway was unknown until now.
GC-MS analysis of MSM-B revealed the presence of two new compounds, namely phenol and α-hydroxy-3-phenoxy-benzeneacetonitrile. The presence of ethylbenzene and 1-phenylethanol along with phenol could be explained by the biodegradation pathway of permethrin. Oxidations of cypermethrin in the benzene group could result in the presence of phenol, which is one of the end products of the permethrin pathway. These reactions are catalyzed by a set of hydrolases, dehydrogenases, and dioxygenases involved in the permethrin pathway. Phenol is further degraded to catechol by a different set of enzymes, taken through the nitrobenzene pathway. From the nitrobenzene pathway, intermediates are converted to pyruvate and acetaldehyde, for further metabolism, and released as CO
2. A fungal strain
Cladosporium sp. HU was isolated from activated hydrolyzed sludge with the ability to biologically convert fenvalerate by the hydrolysis of carboxylester linkage [
53]. Similarly, an actinomycetes strain
Streptomyces aureus HP-S-01, again an isolate from activated sludge, was able to hydrolyse the carboxyl-ester bond to efficiently break down deltamethrin to α-hydroxy-3-phenoxy-benzeneacetonitrile and 3-phenoxybenzaldehyde (3-PBA). α-hydroxy-3-phenoxy-benzeneacetonitrile was also one of the six intermediate products when cyhalothrin was subjected to biotransformation by
B. thuringiensis ZS-19 through the cleavage of the diaryl bond and ester link [
54]. From the literature, we could arrive at the conclusion that the absence of 3-phenoxybenzaldehyde in all samples suggests its rapid degradation by the fungal consortium. Furthermore, the presence of carboxylesterases could be debated because the production of α-hydroxy-3-phenoxy-benzeneacetonitrile necessitates its secretion. The enzymes could be further purified and characterised by further studies.
From studies in liquid medium and the transformation products (TPs) predicted from the EAWAG-BBD pathway and their SMILES, we effectively conclude that the whole subset of enzymes, including hydrolases, carboxylesterases, dehydrogenases, mono- and peroxygenases, are involved in the pathway of bioreduction and biotransformation to completely mineralize cypermethrin to CO
2 (
Table 4 and
Figure 11).