Virtual Screening of a Library of Naturally Occurring Anthraquinones for Potential Anti-Fouling Agents
Abstract
:1. Introduction
2. Results and Discussion
2.1. Virtual Screening by Molecular Docking Analysis Using a Natural Products Dataset
2.2. Pharmacophore Evaluation (Structure-Based Pharmacophore)
3. Materials and Methods
3.1. Origin of Compounds (for Future Anthraquinone Anti-Fouling Study)
3.2. 3D Pharmacophore Model Generation (Structure-Based)
4. Conclusions
Supplementary Materials
Author Contributions
Funding
Institutional Review Board Statement
Informed Consent Statement
Data Availability Statement
Acknowledgments
Conflicts of Interest
References
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Residues | 465D | 302D | 52D | 310D | 100D | 298D | 950D | 132D |
---|---|---|---|---|---|---|---|---|
Ala239A | X | X | X | XX | ||||
Arg215A | X | X | X | |||||
Arg310A | X | X | X | X | ||||
Asn159A | X | X | ||||||
Asp136A | X | X | ||||||
Asp267A | X | X | ||||||
Gln77A | X | |||||||
Gly288A | X | |||||||
His180A | X | |||||||
Ile211A | X | X | X | X | X | X | ||
Phe178A | X | X | ||||||
Phe206A | X | X | X | X | X | X | X | |
Pro74A | X | |||||||
Pro109A | XX | |||||||
Ser79A | X | X | ||||||
Ser265A | X | |||||||
Thr134A | X | X | XX | X | X | |||
Thr266A | X | X | X | X | X | X | ||
Trp82A | XX | XX | X | X | ||||
Trp289A | X | X | X | |||||
Tyr81A | X | X | X | X | ||||
Tyr210A | X | |||||||
Val78A | X | |||||||
Val268A | XX |
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Preet, G.; Astakala, R.V.; Gomez-Banderas, J.; Rajakulendran, J.E.; Hasan, A.H.; Ebel, R.; Jaspars, M. Virtual Screening of a Library of Naturally Occurring Anthraquinones for Potential Anti-Fouling Agents. Molecules 2023, 28, 995. https://doi.org/10.3390/molecules28030995
Preet G, Astakala RV, Gomez-Banderas J, Rajakulendran JE, Hasan AH, Ebel R, Jaspars M. Virtual Screening of a Library of Naturally Occurring Anthraquinones for Potential Anti-Fouling Agents. Molecules. 2023; 28(3):995. https://doi.org/10.3390/molecules28030995
Chicago/Turabian StylePreet, Gagan, Rishi Vachaspathy Astakala, Jessica Gomez-Banderas, Joy Ebenezer Rajakulendran, Ahlam Haj Hasan, Rainer Ebel, and Marcel Jaspars. 2023. "Virtual Screening of a Library of Naturally Occurring Anthraquinones for Potential Anti-Fouling Agents" Molecules 28, no. 3: 995. https://doi.org/10.3390/molecules28030995