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Keywords = tomographic microscopy system

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11 pages, 6346 KB  
Article
The Anisotropic Permeability Insights of Nano-Scale Pore Networks Evolution in the Overmature Shales
by Yanshuai Tang, Tianguo Tang, Xiaohang Bao, Xiujiang Fan and Lei Zhou
Minerals 2026, 16(3), 315; https://doi.org/10.3390/min16030315 - 17 Mar 2026
Viewed by 432
Abstract
Permeability is affected by nanopores and pore structure, and anisotropic permeability is the result of shale lamination, orientation, and stratification of minerals. To understand the reasons for permeability anisotropy, the pore networks of over-mature shale has been studied. The mineral compositions, petrophysical properties, [...] Read more.
Permeability is affected by nanopores and pore structure, and anisotropic permeability is the result of shale lamination, orientation, and stratification of minerals. To understand the reasons for permeability anisotropy, the pore networks of over-mature shale has been studied. The mineral compositions, petrophysical properties, and pore structures of the Lower Cambrian Niutitang Formation shales were analyzed using subcritical gas adsorption, field-emission scanning electron microscopic, and X-ray micro-computed tomographic methods. Quartz, clay minerals, and carbonate are the dominant minerals in the shales. The bedding-parallel and bedding-perpendicular permeabilities are 1.25–46.21 × 10−2 and 1.38–6.62 × 10−2 mD, respectively. The anisotropy of permeability, which is the ratio between the bedding-parallel and bedding-perpendicular permeability, is 0.21–26.87. The micropore and Barrett–Joyner–Halenda pore volumes are 0.54–3.62 and 0.05–0.69 mL/100 g, respectively. The bedding-parallel permeability is correlated positively with the micropore and Barrett–Joyner–Halenda pore volumes. Thin-section observations indicate the shales exhibit a bedding-parallel alignment of phyllosilicate minerals and planar deformation bands. The scanning electron microscopy shows deformation of the lamination and parallel alignment of the clay minerals due to compaction or differential compaction over coarser-grained quartz grains. The scanning electron microscopy images and subcritical gas adsorption data indicate that the pore fracture system is parallel to bedding and formed after diagenesis. Furthermore, X-ray micro-computed tomographic analysis shows that the micro-fractures are also preferentially oriented, parallel to bedding. Full article
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14 pages, 2326 KB  
Article
Enhancing Safety in Refractive Surgery: A Pilot Evaluation of In Vivo Confocal Microscopy
by Dominika Janiszewska-Bil, Magdalena Kijonka, Joanna Kokot-Lesiuk, Victor Derhartunian, Anita Lyssek-Boroń, Dariusz Dobrowolski, Edward Wylęgała, Beniamin Oskar Grabarek and Katarzyna Krysik
J. Clin. Med. 2025, 14(21), 7714; https://doi.org/10.3390/jcm14217714 - 30 Oct 2025
Cited by 2 | Viewed by 882
Abstract
Background: In vivo confocal microscopy (IVCM) provides high-resolution corneal imaging that may enhance preoperative and postoperative assessment in refractive surgery. This pilot study aimed to evaluate the diagnostic utility of IVCM in identifying subclinical corneal abnormalities that could influence surgical qualification and outcomes. [...] Read more.
Background: In vivo confocal microscopy (IVCM) provides high-resolution corneal imaging that may enhance preoperative and postoperative assessment in refractive surgery. This pilot study aimed to evaluate the diagnostic utility of IVCM in identifying subclinical corneal abnormalities that could influence surgical qualification and outcomes. Methods: A total of 7 patients (3 males, 4 females; mean age 48.8 ± 14.5 years) undergoing qualification or follow-up for refractive surgery were prospectively examined between May 2021 and March 2025. Each participant underwent a comprehensive ophthalmic evaluation, including slit-lamp biomicroscopy, corneal topography, anterior segment optical coherence tomography (AS-OCT), and IVCM using the Heidelberg Retina Tomograph II with Rostock Cornea Module. Patients with prior ocular surgery, active infection, or systemic corneal disease were excluded. Results: IVCM revealed subtle epithelial, stromal, and endothelial abnormalities undetectable by conventional methods. Findings such as Thygeson’s keratitis, pre-Descemet’s dystrophy, and subclinical herpes simplex keratitis led to modifications of surgical plans or disqualification in selected cases. The technique also aided postoperative evaluation of epithelial–stromal interface disorders. Conclusions: IVCM proved to be a valuable adjunct in detecting subclinical corneal pathology, refining patient selection, and improving safety in refractive surgery. Larger multicenter studies are warranted to validate its clinical role and define standardized indications for preoperative screening. Full article
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22 pages, 6794 KB  
Article
3D X-ray Tomography Analysis of Mg–Si–Zn Alloys for Biomedical Applications: Elucidating the Morphology of the MgZn Phase
by Guilherme Lisboa de Gouveia, Eshan Ganju, Danusa Moura, Swapnil K. Morankar, José Eduardo Spinelli and Nikhilesh Chawla
Appl. Sci. 2024, 14(17), 8081; https://doi.org/10.3390/app14178081 - 9 Sep 2024
Viewed by 2114
Abstract
Temporary metal implants, made from materials like titanium (Ti) or stainless steel, can cause metabolic issues, raise toxicity levels within the body, and negatively impact the patient’s long-term health. This necessitates a subsequent operation to extract these implants once the healing process is [...] Read more.
Temporary metal implants, made from materials like titanium (Ti) or stainless steel, can cause metabolic issues, raise toxicity levels within the body, and negatively impact the patient’s long-term health. This necessitates a subsequent operation to extract these implants once the healing process is complete or when they are outgrown by the patient. In contrast, medical devices fabricated from absorbable alloys have the advantage of being biodegradable, allowing them to be naturally absorbed by the body once they have fulfilled their role in facilitating tissue healing. Among the various absorbable alloy systems studied, magnesium (Mg) alloys stand out due to their biocompatibility, mechanical properties, and corrosion behavior. The existing literature on absorbable Mg alloys highlights the effectiveness of silicon (Si) and zinc (Zn) additions in improving mechanical properties and controlling corrosion susceptibility; however, there is a lack of comprehensive quantitative morphological analysis of the intermetallic phases within these alloy systems. The quantification of the complex morphology of intermetallic particles is a challenging task and has significant implications for the micromechanical properties of the alloys. This study, therefore, aims to introduce a robust set of morphometric parameters for evaluating the morphology of intermetallic phases within two as-cast Mg alloys with Si and Zn additions. X-ray Computed Tomography (XCT) was used to capture the 3D tomographic data of the alloys, and a novel pair of morphological parameters (ratio of convex hull to particle volume and convex hull sphericity) was applied to the 3D tomographic data to assess the MgZn phase formed in the two alloys. In addition to the impact of composition, the effect of solidification rate on the morphological parameters was also studied. Furthermore, Scanning Electron Microscopy (SEM) and Energy-Dispersive Spectroscopy (EDS) were employed to gather detailed 2D microstructural and compositional information on the intermetallics. The comprehensive characterization reveals that the morphological complexity and size distribution of the MgZn phase are influenced by both compositional changes and the solidification rate. However, the change in MgZn intermetallic particle morphology with size was found to follow a predictable trend, which was relatively agnostic of the chosen casting conditions. Full article
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17 pages, 6801 KB  
Article
Synchrotron Radiation Refraction-Contrast Computed Tomography Based on X-ray Dark-Field Imaging Optics of Pulmonary Malignancy: Comparison with Pathologic Examination
by Eunjue Yi, Naoki Sunaguchi, Jeong Hyeon Lee, Seung-Jun Seo, Sungho Lee, Daisuke Shimao and Masami Ando
Cancers 2024, 16(4), 806; https://doi.org/10.3390/cancers16040806 - 16 Feb 2024
Cited by 3 | Viewed by 2350
Abstract
Refraction-contrast computed tomography based on X-ray dark-field imaging (XDFI) using synchrotron radiation (SR) has shown superior resolution compared to conventional absorption-based methods and is often comparable to pathologic examination under light microscopy. This study aimed to investigate the potential of the XDFI technique [...] Read more.
Refraction-contrast computed tomography based on X-ray dark-field imaging (XDFI) using synchrotron radiation (SR) has shown superior resolution compared to conventional absorption-based methods and is often comparable to pathologic examination under light microscopy. This study aimed to investigate the potential of the XDFI technique for clinical application in lung cancer diagnosis. Two types of lung specimens, primary and secondary malignancies, were investigated using an XDFI optic system at beamline BL14B of the High-Energy Accelerator Research Organization Photon Factory, Tsukuba, Japan. Three-dimensional reconstruction and segmentation were performed on each specimen. Refraction-contrast computed tomographic images were compared with those obtained from pathological examinations. Pulmonary microstructures including arterioles, venules, bronchioles, alveolar sacs, and interalveolar septa were identified in SR images. Malignant lesions could be distinguished from the borders of normal structures. The lepidic pattern was defined as the invasive component of the same primary lung adenocarcinoma. The SR images of secondary lung adenocarcinomas of colorectal origin were distinct from those of primary lung adenocarcinomas. Refraction-contrast images based on XDFI optics of lung tissues correlated well with those of pathological examinations under light microscopy. This imaging method may have the potential for use in lung cancer diagnosis without tissue damage. Considerable equipment modifications are crucial before implementing them from the lab to the hospital in the near future. Full article
(This article belongs to the Section Cancer Causes, Screening and Diagnosis)
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10 pages, 2039 KB  
Article
Neuroinflammatory Findings of Corneal Confocal Microscopy in Long COVID-19 Patients, 2 Years after Acute SARS-CoV-2 Infection
by Pilar Cañadas, Leonela Gonzalez-Vides, Marta Alberquilla García-Velasco, Pedro Arriola, Noemí Guemes-Villahoz and Jose Luis Hernández-Verdejo
Diagnostics 2023, 13(20), 3188; https://doi.org/10.3390/diagnostics13203188 - 12 Oct 2023
Cited by 5 | Viewed by 6212
Abstract
Objective: To describe corneal confocal microscopy findings in patients with long COVID-19 with persistent symptoms over 20 months after SARS-CoV-2 infection. Design: A descriptive cross-sectional study that included a total of 88 patients; 60 patients with Long COVID-19 and 28 controls. Long COVID-19 [...] Read more.
Objective: To describe corneal confocal microscopy findings in patients with long COVID-19 with persistent symptoms over 20 months after SARS-CoV-2 infection. Design: A descriptive cross-sectional study that included a total of 88 patients; 60 patients with Long COVID-19 and 28 controls. Long COVID-19 diagnosis was established according to the World Health Organization criteria. Corneal confocal microscopy using a Heidelberg Retina Tomograph II (Heidelberg Engineering, Heidelberg, Germany) was performed to evaluate sub-basal nerve plexus morphology (corneal nerve fiber density, nerve fiber length, nerve branch density, nerve fiber total branch density, nerve fiber area, and nerve fiber width). Dendritic cell density and area, along with microneuromas and other morphological changes of the nerve fibers were recorded. Results: Long COVID-19 patients presented with reduced corneal nerve density and branch density as well as shorter corneal nerves compared to the control group. Additionally, Long COVID-19 patients showed an increased density of dendritic cells also with a greater area than that found in the control group of patients without systemic diseases. Microneuromas were detected in 15% of Long COVID-19 patients. Conclusions: Long COVID-19 patients exhibited altered corneal nerve parameters and increased DC density over 20 months after acute SARS-CoV-2 infection. These findings are consistent with a neuroinflammatory condition hypothesized to be present in patients with Long COVID-19, highlighting the potential role of corneal confocal microscopy as a promising noninvasive technique for the study of patients with Long COVID-19. Full article
(This article belongs to the Special Issue Confocal Microscopy: Clinical Impacts and Innovation)
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13 pages, 6014 KB  
Communication
Design and Study of a Reflector-Separated Light Dispersion-Compensated 3D Microscopy System
by Hui Li, Xin Tan, Qingbin Jiao, Yuhang Li, Siqi Liu, Jian Pei, Jiahang Zhang, Wei Zhang and Liang Xu
Sensors 2023, 23(9), 4516; https://doi.org/10.3390/s23094516 - 6 May 2023
Cited by 3 | Viewed by 2744
Abstract
The secondary-phase grating-based tomographic microscopy system, which is widely used in the biological and life sciences, can observe all the sample multilayer image information simultaneously because it has multifocal points. However, chromatic aberration exists in the grating diffraction, which seriously affects the observation [...] Read more.
The secondary-phase grating-based tomographic microscopy system, which is widely used in the biological and life sciences, can observe all the sample multilayer image information simultaneously because it has multifocal points. However, chromatic aberration exists in the grating diffraction, which seriously affects the observation of the image. To correct the chromatic aberration of the tomographic microscope system, this paper proposes a system that adopts blazed gratings and angle-variable reflectors as chromatic aberration correction devices according to the principle of dispersion compensation and Fourier phase-shift theory. A reflector-separated light dispersion-compensated 3D microscopy system is presented to achieve chromatic aberration correction while solving the problem of multilayer image overlap. The theoretical verification and optical design of the system were completed using ZEMAX software. The results show that the proposed system reduced the chromatic aberration of ordinary tomographic microscopy systems by more than 90%, retaining more wavelengths of light information. In addition, the system had a relatively wide range in the color difference compensation element installation position, reducing the difficulty of dispersion compensation element installation. Overall, the results indicate that the proposed system is effective in reducing chromatic aberration in grating diffraction. Full article
(This article belongs to the Special Issue Advances in Optical Sensing, Instrumentation and Systems)
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16 pages, 7116 KB  
Article
Study of the Off-Axis Fresnel Zone Plate of a Microscopic Tomographic Aberration
by Lin Yang, Zhenyu Ma, Siqi Liu, Qingbin Jiao, Jiahang Zhang, Wei Zhang, Jian Pei, Hui Li, Yuhang Li, Yubo Zou, Yuxing Xu and Xin Tan
Sensors 2022, 22(3), 1113; https://doi.org/10.3390/s22031113 - 1 Feb 2022
Cited by 6 | Viewed by 4218
Abstract
A tomographic microscopy system can achieve instantaneous three-dimensional imaging, and this type of microscopy system has been widely used in the study of biological samples; however, existing chromatographic microscopes based on off-axis Fresnel zone plates have degraded image quality due to geometric aberrations [...] Read more.
A tomographic microscopy system can achieve instantaneous three-dimensional imaging, and this type of microscopy system has been widely used in the study of biological samples; however, existing chromatographic microscopes based on off-axis Fresnel zone plates have degraded image quality due to geometric aberrations such as spherical aberration, coma aberration, and image scattering. This issue hinders the further development of chromatographic microscopy systems. In this paper, we propose a method for the design of an off-axis Fresnel zone plate with the elimination of aberrations based on double exposure point holographic surface interference. The aberration coefficient model of the optical path function was used to solve the optimal recording parameters, and the principle of the aberration elimination tomography microscopic optical path was verified. The simulation and experimental verification were carried out utilizing a Seidel coefficient, average gradient, and signal-to-noise ratio. First, the aberration coefficient model of the optical path function was used to solve the optimal recording parameters. Then, the laminar mi-coroscopy optical system was constructed for the verification of the principle. Finally, the simulation calculation results and the experimental results were verified by comparing the Seidel coefficient, average gradient, and signal-to-noise ratio of the microscopic optical system before and after the aberration elimination. The results show that for the diffractive light at the orders 0 and ±1, the spherical aberration W040 decreases by 62–70%, the coma aberration W131 decreases by 96–98%, the image dispersion W222 decreases by 71–82%, and the field curvature W220 decreases by 96–96%, the average gradient increases by 2.8%, and the signal-to-noise ratio increases by 18%. Full article
(This article belongs to the Special Issue Micro-/Nano-Fiber Sensors and Optical Integration Devices)
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11 pages, 3227 KB  
Article
Monitored Tomographic Reconstruction—An Advanced Tool to Study the 3D Morphology of Nanomaterials
by Konstantin Bulatov, Marina Chukalina, Kristina Kutukova, Vlad Kohan, Anastasia Ingacheva, Alexey Buzmakov, Vladimir V. Arlazarov and Ehrenfried Zschech
Nanomaterials 2021, 11(10), 2524; https://doi.org/10.3390/nano11102524 - 27 Sep 2021
Cited by 9 | Viewed by 2910
Abstract
Detailed and accurate three-dimensional (3D) information about the morphology of hierarchically structured materials is derived from multi-scale X-ray computed tomography (XCT) and subsequent 3D data reconstruction. High-resolution X-ray microscopy and nano-XCT are suitable techniques to nondestructively study nanomaterials, including porous or skeleton materials. [...] Read more.
Detailed and accurate three-dimensional (3D) information about the morphology of hierarchically structured materials is derived from multi-scale X-ray computed tomography (XCT) and subsequent 3D data reconstruction. High-resolution X-ray microscopy and nano-XCT are suitable techniques to nondestructively study nanomaterials, including porous or skeleton materials. However, laboratory nano-XCT studies are very time-consuming. To reduce the time-to-data by more than an order of magnitude, we propose taking advantage of a monitored tomographic reconstruction. The benefit of this new protocol for 3D imaging is that the data acquisition for each projection is interspersed by image reconstruction. We demonstrate this new approach for nano-XCT data of a novel transition-metal-based materials system: MoNi4 electrocatalysts anchored on MoO2 cuboids aligned on Ni foam (MoNi4/MoO2@Ni). Quantitative data that describe the 3D morphology of this hierarchically structured system with an advanced electrocatalytically active nanomaterial are needed to tailor performance and durability of the electrocatalyst system. We present the framework for monitored tomographic reconstruction, construct three stopping rules for various reconstruction quality metrics and provide their experimental evaluation. Full article
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11 pages, 4560 KB  
Article
Development of a Multihole Atmospheric Plasma Jet for Growth Rate Enhancement of Broccoli Seeds
by Khattiya Srakaew, Artit Chingsungnoen, Waraporn Sutthisa, Anthika Lakhonchai, Phitsanu Poolcharuansin, Poramate Chunpeng, Catleya Rojviriya, Kanjana Thumanu and Sarayut Tunmee
Processes 2021, 9(7), 1134; https://doi.org/10.3390/pr9071134 - 29 Jun 2021
Cited by 10 | Viewed by 3451
Abstract
This work aims to develop a multihole atmospheric pressure plasma jet (APPJ) device to increase the plasma area and apply it to a continuous seed treatment system. Broccoli seed was used to study the effects of an atmospheric pressure plasma jet on seed [...] Read more.
This work aims to develop a multihole atmospheric pressure plasma jet (APPJ) device to increase the plasma area and apply it to a continuous seed treatment system. Broccoli seed was used to study the effects of an atmospheric pressure plasma jet on seed germination and growth rate. An argon flow rate of 4.2 lpm, a plasma power of 412 W, and discharge frequency of 76 kHz were used for seed treatment. The contact angle decreased strongly with the increase in treatment time from 20 s to 80 s. The broccoli seed’s outer surface morphology seemed to have been slightly modified to a smoother surface by the plasma treatment during the treatment time of 80 s. However, the cross-sectional images resulted from Synchrotron radiation X-ray tomographic microscopy (SRXTM) confirmed no significant difference between seeds untreated and treated by plasma for 80 s. This result indicates that plasma does not affect the bulk characteristics of the seed but does provide delicate changes to the top thin layer on the seed surface. After seven days of cultivation, the seed treated by plasma for 30 s achieved the highest germination and yield. Full article
(This article belongs to the Special Issue Progress in Food Processing)
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13 pages, 4610 KB  
Article
Micromirror-Embedded Coverslip Assembly for Bidirectional Microscopic Imaging
by Dongwoo Lee, Jihye Kim, Eunjoo Song, Ji-Young Jeong, Eun-chae Jeon, Pilhan Kim and Wonhee Lee
Micromachines 2020, 11(6), 582; https://doi.org/10.3390/mi11060582 - 10 Jun 2020
Cited by 5 | Viewed by 4385
Abstract
3D imaging of a biological sample provides information about cellular and subcellular structures that are important in cell biology and related diseases. However, most 3D imaging systems, such as confocal and tomographic microscopy systems, are complex and expensive. Here, we developed a quasi-3D [...] Read more.
3D imaging of a biological sample provides information about cellular and subcellular structures that are important in cell biology and related diseases. However, most 3D imaging systems, such as confocal and tomographic microscopy systems, are complex and expensive. Here, we developed a quasi-3D imaging tool that is compatible with most conventional microscopes by integrating micromirrors and microchannel structures on coverslips to provide bidirectional imaging. Microfabricated micromirrors had a precisely 45° reflection angle and optically clean reflective surfaces with high reflectance over 95%. The micromirrors were embedded on coverslips that could be assembled as a microchannel structure. We demonstrated that this simple disposable device allows a conventional microscope to perform bidirectional imaging with simple control of a focal plane. Images of microbeads and cells under bright-field and fluorescent microscopy show that the device can provide a quick analysis of 3D information, such as 3D positions and subcellular structures. Full article
(This article belongs to the Special Issue Micro/Nano Fabrication for Life Sciences)
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