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18 pages, 1931 KB  
Article
Optimized Fertilization Enhances Wheat (Triticum aestivum L.) Yield and Quality in Ningxia Irrigated Silty Soil: Physio-Ecological Mechanisms
by Yuanyuan Hu, Qian Zheng, Pan Xie, Jinrong Yang and Wei Lin
Plants 2026, 15(12), 1902; https://doi.org/10.3390/plants15121902 - 19 Jun 2026
Abstract
Identifying soil nutrient limiting factors and fertilization effects in the irrigated silty soil region of Ningxia is key to improving wheat (Triticum aestivum L.) quality and yield. A field experiment was conducted with five treatments: conventional fertilization (TF), recommended fertilization (RF), nitrogen [...] Read more.
Identifying soil nutrient limiting factors and fertilization effects in the irrigated silty soil region of Ningxia is key to improving wheat (Triticum aestivum L.) quality and yield. A field experiment was conducted with five treatments: conventional fertilization (TF), recommended fertilization (RF), nitrogen deficiency (RF-N), phosphorus deficiency (RF-P), and potassium deficiency (RF-K). The results showed that under RF, soil nutrients remained at relatively high levels, with no significant differences compared with TF. In contrast, RF-N significantly reduced soil mineral nitrogen, total nitrogen, and organic matter compared with TF, and inhibited plant growth, photosynthesis, and plant accumulation of nitrogen, phosphorus, and potassium. Wheat yields under RF and RF-K showed no significant differences from those under TF, whereas RF-N and RF-P significantly reduced yields by 42.68% and 22.69%, respectively, relative to RF, mainly due to decreases in spike length and grain number per spike. The increase in yield was associated with synergistic increases in grain number per spike, spike number per hectare, and spike length. Yield components were significantly positively correlated with soil organic matter, total phosphorus, and mineral nitrogen, with soil total phosphorus identified as the environmental factor most strongly associated with wheat yield. Grain protein content was significantly positively correlated with soil mineral nitrogen, while starch content was significantly negatively correlated, indicating that mineral nitrogen is a key factor regulating grain quality. In summary, nitrogen fertilizer is the primary limiting factor in this region. Applying nitrogen, phosphorus, and potassium together synergistically enhances wheat yield by increasing soil total phosphorus levels and improves grain quality by regulating soil mineral nitrogen. Thus, this combined fertilization strategy provides a foundation for precise nutrient management and the simultaneous improvement of both yield and quality. Full article
(This article belongs to the Section Crop Physiology and Crop Production)
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17 pages, 9118 KB  
Article
Physiological and Multi-Omics Insights into Drought Adaptation of Poacynum hendersonii Seedlings Under Different Water Deficit Regimes
by Yongqian Jia, Ya Ding, Qian Wu, Yuehua Yu, Zhiyi Cheng, Zhongwei Wang and Hao Ma
Agronomy 2026, 16(12), 1191; https://doi.org/10.3390/agronomy16121191 - 18 Jun 2026
Abstract
This study used Poacynum hendersonii (Hook. f.) Woods. seedlings as experimental material. A soil drought group (gradual soil drying) and a PEG-simulated drought group (15% PEG-6000 treatment) were established. By combining physiological measurements, metabolomics, and transcriptomics, we investigated the physiological and molecular mechanisms [...] Read more.
This study used Poacynum hendersonii (Hook. f.) Woods. seedlings as experimental material. A soil drought group (gradual soil drying) and a PEG-simulated drought group (15% PEG-6000 treatment) were established. By combining physiological measurements, metabolomics, and transcriptomics, we investigated the physiological and molecular mechanisms of P. hendersonii in response to drought stress. The results showed that under drought stress, P. hendersonii alleviated oxidative damage by activating the antioxidant enzyme system (catalase, CAT; superoxide dismutase, SOD; peroxidase, POD), and enzyme activities recovered significantly after rehydration. In the osmotic stress group (PEG), hydrogen peroxide (H2O2) and malondialdehyde (MDA) contents increased significantly in the later stages, whereas membrane damage was milder in the soil drought group. Metabolomics analysis revealed significant enrichment of starch and sucrose metabolism pathways during early drought, shifting to unsaturated fatty acid biosynthesis and carbon metabolism in later stages. PEG-simulated drought specifically induced the accumulation of arachidonic acid, which may be associated with ferroptosis-like processes, although direct evidence is lacking. Transcriptomics analysis identified 23,623 differentially expressed genes (DEGs), with transcription factor families such as bHLH, MYB, and NAC playing key roles in drought response. Weighted Gene Co-expression Network Analysis (WGCNA) further revealed gene modules significantly correlated with physiological traits, indicating that enhanced respiratory metabolism (glycolysis, tricarboxylic acid (TCA) cycle) is an important strategy for P. hendersonii to adapt to drought. The study also found that while PEG-simulated drought could simulate the physiological effects of soil drought, significant differences existed in molecular pathways, particularly during later stress stages. This research provides a theoretical basis for elucidating the drought resistance mechanisms of P. hendersonii and offers potential targets for crop drought resistance breeding. Full article
(This article belongs to the Section Plant-Crop Biology and Biochemistry)
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22 pages, 1810 KB  
Article
Predicting the Freshness of Starch-Coated Snakehead Fish Fillets During Storage Using Hyperspectral Imaging Combined with Transfer Learning
by Mingyuan Sha, Zemao Chen, Jingxiao Yu and Qingyi Wei
Foods 2026, 15(12), 2191; https://doi.org/10.3390/foods15122191 - 17 Jun 2026
Viewed by 36
Abstract
Freshness prediction of starch-coated snakehead fish fillets across different storage times remains challenging due to complex quality deterioration and spectral distribution shifts. In the current research, hyperspectral imaging (HSI) combined with transfer learning (TL) was developed to predict the freshness of starch-coated snakehead [...] Read more.
Freshness prediction of starch-coated snakehead fish fillets across different storage times remains challenging due to complex quality deterioration and spectral distribution shifts. In the current research, hyperspectral imaging (HSI) combined with transfer learning (TL) was developed to predict the freshness of starch-coated snakehead fish fillets during short-term refrigerated and long-term frozen storage. The results showed that storage led to texture deterioration, pH increase, TVB-N accumulation, and lipid oxidation, while starch coating effectively delayed quality degradation. Compared with models based only on short-term or long-term data, the domain transfer convolutional neural network (DT-CNN) model improved the robustness of freshness prediction across storage stages. The DT-CNN model based on VIS spectra achieved the best performance for TBA prediction in the starch coating treatment group, with an RP2 of 0.76 and RMSEP of 0.13, and showed strong performance for TVB-N prediction in the starch coating treatment group, with an RP2 of 0.85 and RMSEP of 8.66. These results demonstrate that HSI combined with TL is a promising non-destructive method for freshness evaluation of starch-coated snakehead fish fillets during storage. Full article
(This article belongs to the Section Foods of Marine Origin)
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23 pages, 14630 KB  
Article
Integrated Metabolomics and Transcriptomics Analysis of Exogenous Arginine-Mediated Sucrose Accumulation in Sugarcane
by Hong-Bo Liu, Tanweer Kumar, Xiu-Qin Lin, Chao-Hua Xu, Jun Mao, Chun-Yan Kong, Xu-Juan Li, Chun-Yan Tian, Wajid Khan, Nur-ul-Haq, Li Yao, Pei-Fang Zhao, Jia-Yong Liu, Jun-Gang Wang and Xin Lu
Int. J. Mol. Sci. 2026, 27(12), 5476; https://doi.org/10.3390/ijms27125476 - 17 Jun 2026
Viewed by 142
Abstract
The improvement of sucrose yield in sugarcane is impeded by the crop’s complex polyploid genome and slow progress in breeding. To clarify how arginine (Arg) regulates sugar metabolism and identify key genes associated with sucrose transport and accumulation in sugarcane, a screening experiment [...] Read more.
The improvement of sucrose yield in sugarcane is impeded by the crop’s complex polyploid genome and slow progress in breeding. To clarify how arginine (Arg) regulates sugar metabolism and identify key genes associated with sucrose transport and accumulation in sugarcane, a screening experiment was performed by spraying L-arginine hydrochloride on the leaves and leaf sheaths of three sugarcane varieties (YZ05-51, YZ08-1609, and YT93-159), which differ in growth vigor, leaf morphology and other phenotypic traits. YZ05-51 exhibited the most prominent sugar-increasing effect, and subsequent optimization experiments on its leaf sheaths revealed that 20 g/mu L-arginine hydrochloride at pH 7.0 was optimal, significantly enhancing stem sucrose content. Transcriptomic analysis revealed the upregulation of genes related to sucrose synthesis and transport, with candidate genes enriched in pathways such as starch-sucrose metabolism, glycolysis/gluconeogenesis, and ATP-binding cassette (ABC) transporters. Metabolomic analysis detected 32 sugar metabolites across three categories, of which 24 were differentially abundant (e.g., glucose, galactose, fructose, and mannose). Integrated multi-omics analysis identified key regulatory genes, including SBEs and TPS1 (sucrose synthesis and carbon flux regulation), RBSK, α-amylases, GH28 (starch breakdown, glycolysis, and sugar mobilization), ABC transporters, GTs, and TIM10/TIM12 (sucrose transporter). Collectively, these analyses demonstrate enhanced activity of genes and metabolites involved in sucrose synthesis/transport in leaf sheaths, accompanied by reduced synthesis of other monosaccharides and oligosaccharides. Vigorously metabolizing leaf sheaths is more conducive to sucrose transport. This study provides valuable insights into the molecular mechanisms underlying Arg-mediated sucrose accumulation specifically in the sugarcane YZ05-51 sugarcane, highlighting its critical regulatory roles. Full article
(This article belongs to the Special Issue Latest Research on Plant Genomics and Genome Editing, 2nd Edition)
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17 pages, 2733 KB  
Article
Combined Mechanisms of Streptomyces sp. HU2014 and Coronatine in Promoting Maize Seedling
by Linfeng Hu, Xiaoyu Wang, Jiangsheng Meng, Qian Su, Wenhui Shi, Jungao Zhang and Hongxia Zhu
Microorganisms 2026, 14(6), 1361; https://doi.org/10.3390/microorganisms14061361 - 17 Jun 2026
Viewed by 122
Abstract
The rhizosphere microbiome and phytohormone signaling are critical determinants of plant growth and stress resilience. This study evaluated the combined effects of Streptomyces sp. HU2014 and coronatine (COR) on maize (Zea mays L.) seedlings. Four treatments were established: control (CK), COR seed [...] Read more.
The rhizosphere microbiome and phytohormone signaling are critical determinants of plant growth and stress resilience. This study evaluated the combined effects of Streptomyces sp. HU2014 and coronatine (COR) on maize (Zea mays L.) seedlings. Four treatments were established: control (CK), COR seed soaking (Cor), HU2014 soil inoculation (S), and combined S + Cor (SCor). Growth parameters, chlorophyll content, and antioxidant/oxidative stress markers were measured, and root and leaf transcriptomes, together with root metabolomes, were compared between SCor and CK, followed by qRT-PCR validation. Compared with CK, SCor treatment significantly increased stem diameter (~60%), plant height (~20%), and relative chlorophyll content (SPAD, ~50%). Soluble sugar levels were elevated by over 40% in both leaves and roots, accompanied by tissue-specific modulation of antioxidant enzymes. Transcriptomic analysis of SCor vs. CK revealed 2459 differentially expressed genes (DEGs) in leaves and 3444 DEGs in roots; leaves exhibited upregulation of photosynthetic pigment metabolism (porphyrin and carotenoid pathways) and volatile defense compounds (alkaloids and monoterpenoids), whereas roots showed enrichment in phenylpropanoid/flavonoid biosynthesis, benzoxazinoid synthesis, and starch/sucrose metabolism. Metabolomics of SCor vs. CK identified 526 differentially accumulated metabolites (DAMs) in roots, with significant enrichment in aminoacyl-tRNA biosynthesis, phenylalanine metabolism, and linoleic acid metabolism. Integrative multi-omics analysis further revealed that the JA precursor 13-epi-12-oxo-phytodienoic acid co-clustered with stress-responsive transcription factors (e.g., DREB1C), while tricarboxylic acid (TCA) intermediates and phenylpropanoid metabolites were linked to energy and lignin biosynthesis genes. qRT-PCR confirmed the expression trends of 14 out of 15 tested genes. Collectively, combined HU2014 and COR application triggers tissue-specific transcriptional and metabolic reprogramming in maize, coupling JA-mediated stress signaling with enhanced carbon metabolism and secondary defense compound synthesis to promote rhizosphere adaptation and seedling vigor. Full article
(This article belongs to the Section Plant Microbe Interactions)
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18 pages, 5132 KB  
Article
Integrated Metaproteomics and Untargeted Metabolomics Reveal Season-Specific Enzyme Expression and Non-Volatile Metabolite Profiles in Medium-High-Temperature Daqu
by Qimai Wang, Xing Zheng, Xiaoli Gu, Qiuxiang Tang and Ping Song
Foods 2026, 15(12), 2181; https://doi.org/10.3390/foods15122181 - 17 Jun 2026
Viewed by 82
Abstract
Seasonal fluctuations in open solid-state fermentation drive batch-to-batch variability in Chinese Baijiu Daqu; however, how environmental shifts reshape microbial functional expression and non-volatile flavour precursors in medium-high-temperature Daqu remains poorly resolved. In this study, data-independent acquisition (DIA)-based quantitative metaproteomics and untargeted liquid chromatography–mass [...] Read more.
Seasonal fluctuations in open solid-state fermentation drive batch-to-batch variability in Chinese Baijiu Daqu; however, how environmental shifts reshape microbial functional expression and non-volatile flavour precursors in medium-high-temperature Daqu remains poorly resolved. In this study, data-independent acquisition (DIA)-based quantitative metaproteomics and untargeted liquid chromatography–mass spectrometry (LC-MS) metabolomics were integrated to characterise winter and summer Daqu from Luzhou, Sichuan. Among 2904 annotated non-volatile metabolites, orthogonal partial least squares discriminant analysis (OPLS-DA) revealed clear seasonal separation; 1472 differential metabolites (560 up- and 912 downregulated in winter vs. summer; variable importance in projection [VIP] > 1, p < 0.05) were enriched in glycolysis/gluconeogenesis, the tricarboxylic acid (TCA) cycle, amino acid biosynthesis, and starch/sucrose metabolism. DIA-based quantitative metaproteomics further resolved season-specific enzyme expression: summer Daqu exhibited elevated saccharolytic, glycolytic and amino-acid-converting enzymes (β-glucosidase, 6-phosphofructokinase, pyruvate dehydrogenase), whereas winter Daqu was enriched in glucose oxidase, phosphoenolpyruvate carboxykinase and aldehyde dehydrogenase, consistent with a pattern suggestive of carbon-storage prioritisation. Proteome–metabolome integration established a coherent “enzyme protein abundance–inferred metabolic tendency–metabolite accumulation” correlative framework axis: higher hydrolytic and central-carbon enzyme abundance in summer corresponded to increased maltose, lactate, acetate, L-glutamate and L-aspartate. Therefore, production season reshapes Daqu quality chiefly by corresponding to distinct patterns of in situ enzyme protein abundance, providing a DIA quantitative metaproteome-anchored mechanistic framework for screening high-expression starters and stabilising seasonal Daqu quality. Full article
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25 pages, 4365 KB  
Article
Effect of Black Rice Starch on Structure and Physical–Mechanical Properties of Carboxymethyl Chitosan/Gellan Gum-Based Intelligent Food Packaging Film and Application in Monitoring Shrimp Freshness
by Siti Ayu Ulfadillah, I-Lin Tsai, Chi Lin, Yu-Hao Huang, Yi-Cheng Ho, Min-Lang Tsai and Fwu-Long Mi
Polymers 2026, 18(12), 1505; https://doi.org/10.3390/polym18121505 - 16 Jun 2026
Viewed by 222
Abstract
Visual freshness monitoring is challenging in intelligent seafood packaging. This study developed low-acyl gellan gum (LGG)-based intelligent films incorporating anthocyanin (BRE), carboxymethyl chitosan (CMCh), and black rice starch (BRS) and evaluated their effects on film structure, physical–mechanical properties, and shrimp freshness-monitoring performance. Films [...] Read more.
Visual freshness monitoring is challenging in intelligent seafood packaging. This study developed low-acyl gellan gum (LGG)-based intelligent films incorporating anthocyanin (BRE), carboxymethyl chitosan (CMCh), and black rice starch (BRS) and evaluated their effects on film structure, physical–mechanical properties, and shrimp freshness-monitoring performance. Films prepared via solution casting were evaluated using structural, mechanical, and barrier analyses, alongside shrimp spoilage trials at 25 °C. Structural analyses revealed an integrated polysaccharide network. CMCh reinforced the matrix and increased tensile strength, whereas partially retained BRS granules introduced microstructural heterogeneity, reducing strength and increasing water vapor permeability, highlighting a trade-off between mechanical performance and moisture transport. Consequently, BRS-containing films reduced BRE release, improved pigment retention, and resulted in less intense color changes associated with total volatile basic nitrogen (TVB-N) accumulation during shrimp spoilage. Overall, these results suggest that CMCh and BRS composition-dependently modulate the structure, water vapor transport, pigment retention, and colorimetric response of LGG-based films for visual monitoring of shrimp freshness under accelerated spoilage conditions. Full article
(This article belongs to the Special Issue Polysaccharides in Food Applications)
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15 pages, 4145 KB  
Article
Integrative Analysis of Transcriptome and Metabolome Reveals Molecular Mechanisms of Salt Tolerance in Two Citrus Rootstocks
by Yueting Sun, Peng Wang, Yanmei Wu, Feng Liu and Longfei Jin
Int. J. Mol. Sci. 2026, 27(12), 5361; https://doi.org/10.3390/ijms27125361 - 14 Jun 2026
Viewed by 185
Abstract
Salt stress is a major abiotic stress that threatens citrus yield and quality. To elucidate the molecular mechanisms underlying differential salt tolerance in citrus rootstocks, we performed an integrative transcriptomic and metabolomic analysis of salt-sensitive trifoliate orange (Poncirus trifoliata) and salt-tolerant [...] Read more.
Salt stress is a major abiotic stress that threatens citrus yield and quality. To elucidate the molecular mechanisms underlying differential salt tolerance in citrus rootstocks, we performed an integrative transcriptomic and metabolomic analysis of salt-sensitive trifoliate orange (Poncirus trifoliata) and salt-tolerant Goutoucheng (Citrus aurantium) under 60 mM NaCl treatment for 12 h and 24 h. Physiological observations confirmed that Goutoucheng exhibited less growth inhibition and leaf damage than trifoliate orange. Transcriptome sequencing identified 2081 and 1588 differentially expressed genes (DEGs) in trifoliate orange at 12 h and 24 h, respectively, compared with 1166 and 997 DEGs in Goutoucheng. Metabolome profiling revealed 217 and 173 differentially accumulated metabolites (DAMs) in trifoliate orange versus 162 and 239 DAMs in Goutoucheng at the two time points. KEGG pathway analysis showed that DEGs were mainly enriched in the Mitogen-activated protein kinase (MAPK) signaling pathway—plant, plant hormone signal transduction, and flavonoid biosynthesis—and DAMs were mainly enriched in flavonoid biosynthesis, starch and sucrose metabolism, and glutathione metabolism. Integrative nine-quadrant and two-way orthogonal partial least squares analyses further pinpointed flavonoid biosynthesis as a central hub in salt response. Notably, quercetin derivatives accumulated preferentially in the salt-tolerant rootstock Goutoucheng. Several transcription factor families—including HSF, MYB, NAC, HB-HD-ZIP, C2H2, bHLH, AP2/ERF, and Trihelix—may enhance antioxidant capacity under salt stress by regulating flavonoid accumulation. Collectively, these results indicated that coordinated regulation of flavonoids contributed critically to salt stress adaptation in citrus rootstocks. The identified DEGs, DAMs, and transcription factors provide candidate targets for genetic improvement of salt tolerance in citrus. Full article
(This article belongs to the Special Issue Abiotic Stress Tolerance and Genetic Diversity in Plants, 3rd Edition)
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10 pages, 368 KB  
Article
Effects of 12-Week Sorghum Consumption on Visceral Fat Area and Metabolic Parameters in Japanese Adults: An Exploratory Single-Arm Trial
by Hitomi Miyazaki, Masumi Nagae, Akiko Isa, Yuko Takano, Hiroshi Uchida and Kuniyoshi Shimizu
Nutrients 2026, 18(12), 1884; https://doi.org/10.3390/nu18121884 - 11 Jun 2026
Viewed by 162
Abstract
Background: Visceral fat accumulation is strongly associated with metabolic disorders, particularly in Japanese adults who accumulate visceral fat even at lower body mass index levels. Sorghum is a whole grain rich in resistant starch and polyphenols, which may influence visceral fat area (VFA). [...] Read more.
Background: Visceral fat accumulation is strongly associated with metabolic disorders, particularly in Japanese adults who accumulate visceral fat even at lower body mass index levels. Sorghum is a whole grain rich in resistant starch and polyphenols, which may influence visceral fat area (VFA). This exploratory study aimed to investigate the effects of 12-week sorghum consumption on VFA and metabolic parameters in Japanese adults with visceral fat accumulation. Methods: This single-arm intervention trial included adults aged 20–60 years with VFA ≥ 100 cm2 and no ongoing medical treatment. Participants consumed cooked sorghum (80 g/day, dry weight) for 12 weeks. Anthropometric variables, VFA, blood pressure, and blood biomarkers were assessed before and after the intervention. Dietary intake was evaluated using a three-day food record. Pre- and post-intervention values were compared using paired t-tests. Results: Nine participants completed the study. VFA significantly decreased after 12 weeks of sorghum consumption (p = 0.02). Alanine aminotransferase (ALT) levels showed a non-significant reduction, while other metabolic and hepatic biomarkers remained stable. No adverse changes were observed in dietary intake or physical activity. Eight of nine participants exhibited reductions in VFA. Conclusions: Daily sorghum consumption may contribute to reductions in VFA and improvements in liver-related biomarkers in Japanese adults with visceral fat accumulation. These findings provide preliminary evidence that partially replacing major carbohydrate sources with sorghum may support visceral fat management. Further confirmation in randomized controlled trials is warranted. Full article
(This article belongs to the Section Nutrition and Obesity)
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21 pages, 5777 KB  
Article
Target of Rapamycin Coordinates Metabolic Remodeling at the Protein Level in the Red Alga Cyanidioschyzon merolae
by Jyothi Priya Putcha and Sousuke Imamura
Plants 2026, 15(12), 1790; https://doi.org/10.3390/plants15121790 - 10 Jun 2026
Viewed by 236
Abstract
Target of rapamycin (TOR) is a conserved protein kinase that integrates nutrient and energy signals to control growth and metabolism, yet its proteome-level impact in microalgae remains poorly understood. Here, we conducted quantitative proteomics analysis of the unicellular red alga Cyanidioschyzon merolae under [...] Read more.
Target of rapamycin (TOR) is a conserved protein kinase that integrates nutrient and energy signals to control growth and metabolism, yet its proteome-level impact in microalgae remains poorly understood. Here, we conducted quantitative proteomics analysis of the unicellular red alga Cyanidioschyzon merolae under rapamycin-induced TOR inactivation to characterize global changes in protein abundance. TOR inhibition triggered widespread metabolic remodeling, including coordinated shifts in carbon and nitrogen allocation, and pronounced changes in protein synthesis, photosynthesis, and energy metabolism. Specifically, proteins associated with ribosome biogenesis and ribosomal subunits declined broadly, indicating impaired translation, alongside pronounced reductions in photosynthetic components, including PSI/PSII subunits and chlorophyll biosynthesis enzymes. In contrast, triacylglycerol (TAG) biosynthesis and starch metabolism were enhanced, indicating a shift towards carbon storage. Notably, a diacylglycerol acyltransferase (DGAT; CMQ199C) and a UDP-glucose pyrophosphorylase (UGP; CMS159C) were strongly induced (2.02-fold and 3.48-fold, respectively), identifying them as candidate targets for enhancing TAG and starch accumulation. Proteins associated with nitrogen assimilation were also upregulated, supporting TOR-dependent regulation of nitrogen metabolism at the protein level. Together, these results indicate that TOR orchestrates proteome-level reprogramming in C. merolae, coordinating growth, energy production, and carbon storage across interconnected metabolic pathways. Full article
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14 pages, 1796 KB  
Article
Composition of Primary Metabolites in Winter Barley Grain as Affected by NPK Fertilization of Reclaimed Land
by The Ngoc Phuong Nguyen, Minchang Kim, Jwakyung Sung and Alisdair R. Fernie
Plants 2026, 15(12), 1780; https://doi.org/10.3390/plants15121780 - 9 Jun 2026
Viewed by 180
Abstract
Optimizing nutrient management is critical for enhancing crop productivity and grain nutritional quality in reclaimed soils, where poor soil fertility and salinity often limit barley cultivation. In that context, this study evaluated the effects of NPK fertilization on barley grain metabolism in reclaimed [...] Read more.
Optimizing nutrient management is critical for enhancing crop productivity and grain nutritional quality in reclaimed soils, where poor soil fertility and salinity often limit barley cultivation. In that context, this study evaluated the effects of NPK fertilization on barley grain metabolism in reclaimed soil, using four barley cultivars (Betaone, Heuknuri, Nurichal, and Sogang) under fertilized (F) and non-fertilized (NF) conditions. Chemical fertilization (N–P2O5–K2O = 88–72–36 kg ha−1) increased crude protein (CP) concentrations in Heuknuri and Sogang by over 30%, while reducing the soluble sugar content by 15–24%. In contrast, starch content remained relatively stable across all cultivars. Gas chromatography–mass spectrometry (GC–MS) profiling revealed that fertilization caused only modest changes in grain primary metabolism, including increased fatty acids (oleate, linoleate), alongside consistent accumulation of amino acids related to nitrogen assimilation (asparate, asparagine, glutarate, proline). Two-way ANOVA and principal component analysis (PCA) revealed that the cultivar identity, rather than fertilization, was the dominant factor shaping metabolic variation, affecting 23 of 28 detected metabolites. Notably, Betaone and Heuknuri exhibited higher overall metabolite accumulation and stable metabolic profiles across treatments, suggesting better physiological adaptation to nutrient-deficiency stress. These results indicate that NPK fertilization under reclaimed soil conditions promotes nitrogen assimilation more than carbon storage, and grain metabolic changes are largely cultivar-dependent. However, the underlying regulatory mechanisms controlling carbon–nitrogen allocation and lipid metabolism under fertilization were not fully investigated and require further multi-omics and long-term field studies. Full article
(This article belongs to the Special Issue Advances in Nitrogen Nutrition in Plants—2nd Edition)
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19 pages, 13503 KB  
Article
Early-Season Rice Varieties with Low Amylose Content Can Achieve Low Chalkiness and Comparable Yield to High-Amylose Ones in the Middle and Lower Reaches of the Yangtze River
by Jiale Wu, Jingjing Wu, Renwei Que, Wenle Qi, Lin Guo, Guanjun Huang, Xueming Tan, Yongjun Zeng and Xiaobing Xie
Agriculture 2026, 16(12), 1255; https://doi.org/10.3390/agriculture16121255 - 6 Jun 2026
Viewed by 290
Abstract
Early-season rice in the middle and lower reaches of the Yangtze River is vital for China’s food security, but the planting area has sharply decreased in recent years due to its poor appearance and taste quality, as well as low returns. Therefore, we [...] Read more.
Early-season rice in the middle and lower reaches of the Yangtze River is vital for China’s food security, but the planting area has sharply decreased in recent years due to its poor appearance and taste quality, as well as low returns. Therefore, we collected and analyzed 334 early-season rice varieties released in the region from 2000 to 2022. To verify whether low-amylose content (L-Am) varieties can reduce chalkiness without compromising yield, two field experiments were conducted: a two-year consecutive experiment (2021–2022) using six representative varieties (low amylose, L-Am: 14.5–16.8%; medium-high amylose, MH-Am: 23.8–25.9%), and a one-year validation experiment (2024) utilizing 32 widely cultivated varieties. The results indicated that the amylose content (AC) of the 334 varieties showed a normal distribution, with varieties containing 18–20% AC being the most prevalent (23.6%), which resulted in L-Am varieties collectively accounting for 46.4%; additionally, AC was significantly positively correlated with chalky kernel rate (CKR) and chalkiness degree (CKD), and negatively correlated with panicles per m2 and length–width ratio (LWR), but showed no correlation with yield. Similarly, L-Am and MH-Am varieties achieved comparable yields through compensatory adjustments in field experiments: L-Am varieties had 12.8–13.9% more panicles per m2 but 3.6–7.3% lower 1000-grain weight. Moreover, L-Am varieties exhibited superior grain quality, with 70.8–73.5% and 54.0–62.1% lower CKR and CKD, respectively. Physiological analyses revealed that L-Am varieties exhibited a smaller maximum grain-filling rate (GFRmax) and amylose accumulation rate (GAmRmax), mean grain-filling rate (GFRmean) and amylose accumulation rate (GAmRmean), longer active grain-filling/amylose accumulation periods (D), and higher activities of soluble starch synthase (SSS) during grain-filling stages. These results demonstrate that early-season rice varieties with low AC tend to exhibit significantly lower chalkiness. Physiologically, this superior appearance quality is strongly associated with maintained yield through compensatory yield components and distinct starch synthesis kinetics, offering a practical strategy for enhancing both quality and productivity in early-season rice. Full article
(This article belongs to the Section Crop Production)
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19 pages, 691 KB  
Review
Balancing High Yield and Metabolic Health in Dairy Ruminants: The Central Hub Role of the Rumen Microbiota
by Xingwei Jiang, Xinyi Zhang, Yiyang Sun, Shixi Liu, Xiaodong Chen, Rongzhen Zhong, Yangchun Cao, Qingyu Sun and Shengru Wu
Vet. Sci. 2026, 13(6), 546; https://doi.org/10.3390/vetsci13060546 - 2 Jun 2026
Viewed by 417
Abstract
Modern dairy production has greatly increased milk yield, but high productivity is often accompanied by greater metabolic pressure, particularly during the transition period. Ketosis, fatty liver, and subacute ruminal acidosis are major disorders that limit health, efficiency, and sustainability in high-yielding dairy ruminants. [...] Read more.
Modern dairy production has greatly increased milk yield, but high productivity is often accompanied by greater metabolic pressure, particularly during the transition period. Ketosis, fatty liver, and subacute ruminal acidosis are major disorders that limit health, efficiency, and sustainability in high-yielding dairy ruminants. This review examines the rumen microbiota as a central biological interface linking diet, ruminal fermentation, epithelial function, hepatic metabolism, and inflammation. Under homeostatic conditions, the rumen microbiota supports lactation by converting dietary fibre, starch, and nitrogen into volatile fatty acids, microbial protein, and other metabolites required for gluconeogenesis, milk component synthesis, and epithelial maintenance. However, under excessive nutritional or physiological stress, especially high-concentrate feeding and periparturient negative energy balance, this system may shift toward dysbiosis, acid accumulation, lipopolysaccharide release, epithelial barrier impairment, and activation of gut–liver inflammatory pathways. These changes can contribute to the occurrence and interaction of subacute ruminal acidosis, ketosis, and fatty liver. We further summarize key factors affecting rumen microbial stability, including diet structure, host variation, physiological stage, environmental stress, feeding management, and ruminal epithelial volatile fatty acid absorption. Finally, microbiome-oriented strategies, such as gradual dietary transition, nutritional preconditioning, probiotics, postbiotics, functional metabolites, host metabolic support, and epithelial-targeted interventions, are discussed. Maintaining rumen microbial homeostasis should be regarded as a core principle for balancing high milk yield with long-term metabolic health. Future research should move beyond descriptive profiling toward causal validation of host–microbe interactions and the development of microbiome-based early-warning and individualized nutritional management systems. Full article
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29 pages, 6190 KB  
Article
Seed Hormonal Priming Improves Drought Resilience in Durum Wheat Through Modulation of Physiological and Biochemical Traits
by Rihab Zagoub, Manel Hmissi, Erika Fernandez-Martinez, Francisco Garcia-Sanchez and Abdelmajid Krouma
Plants 2026, 15(11), 1700; https://doi.org/10.3390/plants15111700 - 30 May 2026
Viewed by 219
Abstract
Drought stress is one of the most severe constraints affecting wheat production worldwide. Under these conditions, the development of sustainable and economically viable strategies, such as seed priming, is essential to improve wheat performance and drought resilience. The present study carried out a [...] Read more.
Drought stress is one of the most severe constraints affecting wheat production worldwide. Under these conditions, the development of sustainable and economically viable strategies, such as seed priming, is essential to improve wheat performance and drought resilience. The present study carried out a greenhouse experiment on four Mediterranean durum wheat cultivars (Triticum turgidum ssp. durum Desf), i.e., Karim (Kr) and Khiar (Kh) from Tunisia and Espelta (Esp) and Mocho (Mo) from Spain, subjected to drought stress conditions, and using primed abscisic acid (ABA), indole-3-acetic acid (IAA), melatonin (Mlt), and salicylic acid (SA), and non-primed seeds. In order to assess the physio-biochemical responses of durum wheat, such as plant growth, chlorophyll, relative water content (RWC), water potential (Ψw), osmotic potential (Ψs), proline, soluble sugars, starch, glycine betaine, hydrogen peroxide, malondialdehyde, and antioxidant enzyme activities. The results showed that water stress significantly reduced plant growth, SPAD index, RWC, Ψw, and Ψs, while upregulating H2O2 and MDA levels, depending on the wheat cultivars. Soluble sugars decreased, whereas starch, glycine betaine, and proline accumulated in all cultivars. Superoxide dismutase activity was reduced (24–37%) under water stress as compared to the control condition, while APX, CAT, and POD activities significantly increased. Among the cultivars, Esp exhibited the greatest plasticity in response to water deficit, whereas Kh appeared to be most sensitive. Furthermore, the present results revealed that the priming durum wheat seeds with ABA, IAA, Mlt, and SA improved leaf hydration, particularly through soluble sugar accumulation. Seed priming also alleviated oxidative stress by reducing H2O2 and MDA levels and stimulating APX, CAT, POD, and SOD activities. Plants grown from non-primed seeds of Spanish and Tunisian cultivars exhibited differential responses to drought stress, and those derived from primed seeds showed varying degrees of enhanced drought tolerance. Espelta demonstrated a high potential for stress tolerance and responsiveness to priming, followed by Karim, whereas Khiar was the most sensitive cultivar. Overall, the cultivars can be ranked in decreasing order of stress tolerance as Esp > Kr > Mo > Kh. These findings highlight the potential of phytohormone-based seed priming as an efficient and practical approach to enhance drought resilience in durum wheat, offering promising prospects for improving crop performance and stability under increasingly water-limited conditions in the era of climate change. Full article
(This article belongs to the Special Issue Plant Hormones in Growth, Development, and Regeneration)
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Article
Effects of Glomus intraradices Inoculation on Growth, Nutrient Uptake, and Rhizosphere–Endophytic Microenvironment of Sweet Potato Seedlings
by Jie Yuan, Wenna Zhao, Xiaoqing Wu, Minghui Xu, Cheng Ji, Cong Xu, Fei Chen, Yongchun Zhang and Jidong Wang
J. Fungi 2026, 12(6), 393; https://doi.org/10.3390/jof12060393 - 29 May 2026
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Abstract
Arbuscular mycorrhizal fungi (AMF) can improve plant performance, but how they coordinately influence root metabolism and associated bacterial communities in sweet potato remains unclear. Here, a pot experiment was conducted to investigate the effects of Glomus intraradices inoculation on sweet potato seedlings by [...] Read more.
Arbuscular mycorrhizal fungi (AMF) can improve plant performance, but how they coordinately influence root metabolism and associated bacterial communities in sweet potato remains unclear. Here, a pot experiment was conducted to investigate the effects of Glomus intraradices inoculation on sweet potato seedlings by integrating analyses of rhizosphere soil properties, plant growth and nutrient uptake, root metabolomics, and rhizosphere and endophytic bacterial communities using 16S rRNA gene sequencing with FAPROTAX-based functional prediction. AMF inoculation significantly increased whole-plant fresh and dry biomass, potassium concentration and accumulation, and the accumulation of starch and water-soluble carbohydrates, while no significant effects were observed on dry matter rate or plant nitrogen and phosphorus concentration. In the rhizosphere, AMF reduced soil electrical conductivity and increased organic matter content without significantly affecting pH, alkali-hydrolyzable nitrogen, available phosphorus, or available potassium. Root metabolomic profiling identified 289 differential metabolites, with enrichment of phenylpropanoid biosynthesis, glycerophospholipid metabolism, porphyrin metabolism, and nucleotide metabolism, together with broad up-regulation of lipid-related metabolites. Bacterial communities showed strong compartment specificity, with the root endosphere displaying lower alpha diversity than the rhizosphere. Higher rhizosphere bacterial Shannon diversity was observed in the AMF treatment, together with compartment-dependent shifts in bacterial community composition; enrichment of endophytic taxa such as Devosia and Niastella was detected following AMF inoculation. Functional prediction further suggested niche differentiation between rhizosphere and endophytic bacteria, together with AMF-associated shifts in carbon- and nitrogen-related functions. Overall, these results suggest that G. intraradices inoculation is associated with enhanced sweet potato growth and enhanced potassium and carbohydrate accumulation in association with coordinated changes in rhizosphere conditions, root metabolism, and bacterial community assembly. Full article
(This article belongs to the Special Issue Plant Symbiotic Fungi, 2nd Edition)
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