Search Results (15,443)

Adult neural stem cells (NSCs) maintain lifelong neurogenesis, a fundamental process for neuroplasticity, memory and brain homeostasis. Despite decades of research, translating basic NSC biology into effective clinical therapies remains a central challenge. Here we present a narrative review that provides a comprehensive update on the current landscape of adult NSC research, associating molecular mechanisms with the emerging translational technologies. First, we analyze the biological features and neurogenic sequences within canonical niches such as the subventricular lateral zone and the subgranular zone, emphasizing phylogenetic and migratory differences between rodent models and humans. Second, we integrate these mechanisms with the influence of environmental and pathological modulators, describing how aging, metabolic changes, chronic stress and neuroinflammation disrupt NSC quiescence and lineage progression. Finally, we highlight recent technological advances driving the field toward clinical applications. By examining current NSC isolation strategies, induced pluripotent stem cell modeling, direct somatic reprogramming and the use of CRISPR-Cas9-based gene-editing therapies, this review delineates the pathways to overcome existing methodological limitations. Ultimately, we provide an integrated context that connects the modulation of the neurogenic niches with advanced in vitro technologies, offering new perspectives for regenerative medicine and the treatment of neurological disorders. Full article

Brown spot on the leaf sheath is an emerging disease of sweet corn (Zea mays L.) in Sinaloa, Mexico, with an unknown etiology. This study aimed to identify the causal agent of the disease and assess its pathogenicity on commercial sweet corn hybrids. Bacterial strains were isolated from symptomatic leaf sheaths collected from commercial fields. Identification was performed through biochemical profiling (API 50CHB/E), pathogenicity tests on alternative hosts (potato, onion, celery), and molecular analysis (16S rRNA and recA genes sequencing and phylogenetic reconstruction). Pathogenicity and virulence were confirmed by inoculating four sweet corn hybrids in a greenhouse. The strains were Gram-negative rods, identified as Burkholderia gladioli based on biochemical profiles and molecular data (99% 16S rRNA+ recA similarity; phylogenetic clustering within the B. gladioli clade). In greenhouse trials, the strains induced brown spot lesions on the leaf sheaths of all tested hybrids, replicating field symptoms fulfilling Koch’s postulates. This is the first report of B. gladioli as the causal agent of brown spot on the leaf sheath of sweet corn in Mexico. The pathogen’s broad host range highlights its potential as an emerging threat to horticultural crops in the region. Full article

Serine protease-like proteases (SBTs) constitute a distinct class of serine proteases exclusive to plants. Despite the recognized importance of SBTs in various plants, knowledge concerning the evolution and function of SBT genes in Brassica napus is limited. In this study, a total of 140, 63, and 71 SBT genes were identified in B. napus, B. oleracea, and B. rapa, respectively. Phylogenetic analysis classified these 330 identified SBTs into five subfamilies, and collinearity analyses further indicated that gene redundancy and gene loss were strongly associated with polyploidization in Brassicaceae plants. Additionally, analyses of gene structure and conserved motifs suggested that evolutionary changes in exon-intron structures may contribute to the differentiation of coding regions, expression patterns, and even functions within the BnSBT family. Analysis of promoter cis-regulatory elements revealed their predominant association with hormonal responses, abiotic stress, and processes related to plant growth and development. Furthermore, eight differentially expressed genes (DEGs) were identified through a comparative analysis of RNA-Seq data from high- and low-yielding cultivars. qRT-PCR verification also revealed that these eight DEGs (BnSBT1.4b, BnSBT1.4c, BnSBT1.4d, BnSBT1.5c, BnSBT1.6b, BnSBT1.8a, BnSBT3.14a, and BnSBT3.14b) were significantly differentially expressed in the pericarp and seeds. They could be categorized into two distinct groups: BnSBT1.4b, BnSBT1.4c, BnSBT1.4d, BnSBT1.5c, and BnSBT1.8a were highly expressed in high-SPSI material, whereas BnSBT1.6b, BnSBT3.14a, and BnSBT3.14b were highly expressed in low-SPSI material. These results suggest that BnSBTs have diverse potential functions in regulating yield traits in Brassica napus. These findings offer key insights into Brassicaceae SBT genes and highlight the importance of BnSBTs in achieving high yields in Brassica napus. Full article

The Eurasian lynx (Lynx lynx) is an apex predator and an important sentinel for trophically transmitted helminths acquired via predation on wild ungulates. On 2 March 2022, an adult male lynx that was road-killed in the Apuseni Mountains (Surducel hunting ground, Bihor County) was collected, frozen for biosafety, and a necropsy was performed. Taeniid cestodes were detected, with a total intestinal burden of nine adult specimens. Genetic analyses confirmed Taenia lynciscapreoli, and the obtained sequences were deposited in GenBank (PV843597, PV855065, PV844409). Phylogenetic inference based on cox1 assigned the Romanian isolate within the European cluster, distinct from the Chinese isolate, while showing genetic proximity to Taenia sp. (MW846305) that have been reported from a lynx in China. This study represents the first molecular identification of T. lynciscapreoli in the Eurasian lynx in Romania and, to our knowledge, the first record from Southeastern Europe. Full article

This study revises the genus Cyanoboletus (Boletaceae) in the Mediterranean Basin, integrating single-locus and multi-locus phylogenetic analyses (ITS, LSU, tef1-α, and rpb2), morphological characterisation, ecology, and arsenic accumulation in basidiomes. Morphological descriptions (including a new form, Cyanoboletus mediterraneensis f. pallidus), comprehensive sampling, type studies, biogeography, macro- and microphotographs, an identification key, and a historical overview of the nomenclatural issues surrounding C. pulverulentus, C. poikilochromus, and C. mediterraneensis are given. An epitype collection is designated for C. pulverulentus. A new method to measure spore suprahilar depression has been proposed, which allowed more clear morphological separation between C. mediterraneensis and C. pulverulentus. This method may prove useful for species delimitation in other fungal groups that have asymmetric basidiospores. Additionally, we generated a new ITS sequence of the C. sinopulverulentus holotype and inferred its conspecificity with the later described C. flavocontextus. Furthermore, notes on the taxonomy of Boletus gabretae are presented, and its placement in the genus Neoboletus is suggested. Cyanoboletus is confirmed as a strongly supported generic clade encompassing 21 monophyletic species-level clades, 14 of which represent known species, and seven are undescribed taxa. The synonymy of Cupreoboletus with Cyanoboletus is also verified. This publication provides the tools to delimit Cyanoboletus species that have important conservation value, which can be used by conservationists, ecologists, and citizen scientists. It also highlights species-specific arsenic hyperaccumulation in C. pulverulentus, contributing to a better understanding of fungal metal uptake. Our study indicates that within Cyanoboletus, only C. pulverulentus demonstrates this characteristic and is the only known member of Boletales that possesses a high arsenic accumulation ability. Full article

Background/Objectives: Staphylococcus aureus, particularly methicillin-resistant strains, is a leading cause of severe pneumonia. Understanding local molecular epidemiology, including virulence gene profiles and antimicrobial resistance (AMR) mechanisms, is crucial for effective infection control. This pilot study aimed to characterize S. aureus isolates from pneumonia patients in Karaganda, Kazakhstan. Methods: We collected 48 respiratory samples from patients with pneumonia across three medical institutions. Bacterial identification was performed using MALDI-TOF MS. Antimicrobial susceptibility testing (AST) was carried out using European Committee on Antimicrobial Susceptibility Testing (EUCAST) guidelines. Whole-genome sequencing of S. aureus isolates was conducted on an Ion Torrent S5 platform. Genomic analysis included multilocus sequence typing (MLST), identification of virulence and AMR genes, and phylogenetic reconstruction. Results: S. aureus was identified in 14.6% (n = 7) of pneumonia cases included in this study. All isolates (100%, n = 7) were phenotypically resistant to benzylpenicillin. The mecA gene was detected in 57.1% of isolates (n = 4), while phenotypic resistance to methicillin was observed in 28.6% (n = 2) of the isolates. Resistance to azithromycin (57.1%, n = 4) and levofloxacin (42.9%, n = 3) was observed among the isolates. Two isolates (28.6%) were multidrug-resistant (MDR). Genomic analysis revealed the prevalence of the ST22 clone (57.1%, n = 4) in the studied cohort. Other sequence types were ST97, ST8, and ST45 (14.3% each). Phylogenetic analysis showed clustering consistent with MLST profiles. All isolates carried a conserved core virulence arsenal, including hemolysin (hla, hlg), biofilm-forming genes (icaADBC), immune evasion genes (sak, scn), and iron acquisition genes (isd). The Panton–Valentine leukocidin (PVL) genes were detected in three isolates. AMR gene analysis revealed the ubiquitous presence of mepA and tetracycline efflux pump genes, along with regulatory genes (arlRS, mepR, mgrA). The blaZ and ermA genes were not detected despite high phenotypic resistance to penicillin and macrolides. Conclusions: This study reports the identification of the virulent and resistant ST22 S. aureus clone in pneumonia cases in Karaganda, Kazakhstan. The discordance between phenotypic and genotypic AMR profiles underscores the necessity for integrated diagnostic approaches. Full article

Mosquitoes are recognized as the arthropod group with the greatest vectorial capacity, and the viruses they transmit constitute a significant concern in the context of global One Health. In addition, these insects act as hosts for a wide diversity of insect-specific viruses (ISVs), which exclusively infect arthropods. Expanding knowledge of ISVs is particularly relevant, given their potential influence on arbovirus replication and their role in elucidating the evolutionary processes that shape virus–vector interactions. In this study, we report the isolation and molecular analysis of three negeviruses associated with different mosquito species of the genera Culex, Coquillettidia, Mansonia, and Ochlerotatus, collected in Belém, Pará State, in the Brazilian Amazon: Loreto virus, Wallerfield virus, and a putative new species, designated Terra firme virus. Eleven pools exhibited cellular alterations consistent with cytopathic effects in invertebrate C6/36 cells but showed no evidence of replication in vertebrate Vero cells. Notably, simultaneous infections by two or three negeviruses were detected in some mosquito pools, indicating the occurrence of multiple viral infections within individual samples. Genomic analyses revealed that the isolated strains share conserved domains with previously described isolates from other countries. Phylogenetic inferences demonstrated that the investigated strains are classified within the clades Nelorpivirus and Sandewavirus. Taken together, these findings expand the currently known diversity of the negevirus group and contribute to a more comprehensive understanding of its host range and geographic distribution. Full article

This Special Issue of Genes brings together a set of contributions that, despite their apparent thematic diversity, share a common methodological thread: the application of genomic and molecular tools to fundamental questions in animal biology, ranging from production traits in livestock to phylogenetic identity in wild species [...] Full article

Lysobacter antibioticus Hz25 is a novel strain that was isolated from the rhizosphere of the relict endemic plant Hedysarum zundukii Peschkova (Fabaceae), which grows on carbonate soils in the Baikal region of Russia. This work presents the complete genome sequence of Hz25 (5.98 Mb, 66.94% GC), which was obtained using a hybrid assembly method combining Oxford Nanopore and Illumina sequencing. Phylogenetic analysis based on 47 Lysobacter genomes and an average nucleotide identity (ANI) value of 96% confirmed its affiliation with L. antibioticus. A comparative pan-genome analysis with three closely related strains (13-6, 76, and ATCC 29479) identified 554 strain-specific genes. This significant genomic plasticity likely reflects adaptation to the sharply continental climate, high insolation, and low free iron content of the native soil. The genome encodes a comprehensive micropredator arsenal, including: seven chitinase genes (GH18 and GH19 families); bacteriolytic enzymes (Blp, L1, L4, Ami); a complete type III secretion system (T3SS) with predicted effectors; type IV pili (including the PilZ-PilB regulatory complex); and siderophore biosynthesis genes (lysochelin). The genome contains genes ars of an arsenic resistance system, but lacks the ACR3 efflux pump, suggesting that these genes may have alternative functions. Genes involved in calcium homeostasis (Excalibur domain, Na⁺/Ca²⁺ antiporter) were also identified. These features make Hz25 a promising candidate for biocontrol applications in cold climates and metal-contaminated environments. Full article

Bovine viral diarrhea virus (BVDV) is a major cattle pathogen associated with significant economic losses worldwide. In Brazil, the high genetic diversity of circulating strains represents an additional challenge for disease control. To update the molecular epidemiology of BVDV in southern Brazil, 16,198 bovine serum samples collected in 2020 through a national surveillance program were screened for pestivirus RNA by RT-qPCR. Forty-nine samples (0.36%) were positive and subjected to partial sequencing of the 5′UTR and N^pro regions. Phylogenetic analysis identified BVDV-1a (25/49; 51%), BVDV-1b (1/49; 2%), BVDV-1d (7/49; 14%), and BVDV-2b (16/49; 33%), with no detection of HoBiPeV. When compared descriptively with data from 2010 in the same region, BVDV-1a remained the most frequent subgenotype, while BVDV-2b also represented a substantial proportion of detections, contrasting with other regions worldwide. Although the two datasets are not directly comparable, and no statistically significant differences were observed, these findings provide an updated overview of circulating BVDV subgenotypes in Rio Grande do Sul. The absence of HoBiPeV contrasts with reports from other regions of Brazil and suggests a distinct regional pattern of pestivirus circulation. Overall, the results reinforce the importance of continuous genomic surveillance to monitor changes in viral diversity and support control strategies in cattle populations. Full article

Grapes are among the most widely cultivated fruit crops globally, yet their growth and yield are severely compromised by Colletotrichum viniferum, which causes a devastating disease that affects grape berries. The wall-associated kinase (WAK) gene family, a unique subfamily of receptor-like-kinases (RLKs), plays important roles in mediating plant responses to both abiotic and biotic stresses. However, the expression patterns and biological functions of grape WAKs in response to C. viniferum infection remain largely uncharacterized. In this study, a total of 57 VdWAK genes were identified and phylogenetically classified into twelve subgroups. Chromosomal localization and collinearity analyses further revealed that tandem duplication and segmental duplication events contributed to the expansion of the VdWAK gene family. Transcriptomic profiling identified VdWAK19 as a key responsive gene. It was predominantly expressed in mature berries but transcriptionally repressed upon C. viniferum infection. Virus-induced gene silencing assays in grape berries demonstrated that knockdown of VdWAK19 significantly reduced fruit resistance to C. viniferum infection. Overall, these findings advance our understanding of the functional roles of VdWAK genes during C. viniferum infection and provide a theoretical basis for the potential application of VdWAK19 in breeding grape varieties with enhanced resistance to ripe rot. Full article

Human parainfluenza virus type 4 (hPIV4) remains poorly characterized compared with other hPIV serotypes and information on its genomic diversity is particularly limited for Russia and Eastern Europe. In this study, we report the first complete genome sequences of hPIV4 isolates from Russia and place them in the context of global hPIV4 genetic diversity. Eight hPIV4 viruses were isolated in cell culture from respiratory samples collected from hospitalized children in Saint Petersburg between 2017/2018 and 2023/2024. Complete viral genomes were recovered using a metagenomic whole-genome amplification approach based on SMART-9N technology. Phylogenetic analysis of 178 complete hPIV4 genomes showed clear separation into hPIV4a (n = 132) and hPIV4b (n = 46) subtypes. Based on genetic distance approach, hPIV4a formed two major clusters, with the dominant cluster B subdivided into four subclusters (B1–B4); and subcluster B4 further resolved into four genetic lineages. All Russian isolates belonged to the subcluster B4 and were distributed among multiple co-circulating lineages. In contrast, hPIV4b genomes segregated into three distinct clusters, reflecting structured genetic diversity within the subtype. Collectively, this study provides, to the best of our knowledge, the first p-distance-based framework for hPIV4 whole-genome classification and contributes new complete genome sequences for an underrepresented region. Full article

Microbial communities inhabiting natural and anthropogenically impacted environments are exposed to diverse abiotic stressors that can influence the distribution of functional traits. However, distinguishing the processes underlying phenotypic patterns remains challenging in microbial systems, where ecological and evolutionary dynamics often overlap. In this study, we experimentally assessed the distribution of biofilm formation and plastic degradation capacity in bacterial isolates across environments characterized by different stress regimes, to evaluate whether these traits are primarily associated with environmental context rather than phylogenetic relatedness, and may therefore reflect environment-dependent phenotypic modulation on a lineage-specific functional background. Taxonomic affiliation was assessed using 16S rRNA gene sequencing, while expressed biochemical profiles were characterized by Fourier-transform infrared (FTIR) spectroscopy. Multivariate ordination and Partial Least Squares analyses were used to explore relationships among taxonomy, biochemical profiles, functional phenotypes, and environment of isolation. Phylogenetic signal analysis confirmed that neither trait was strongly constrained by vertical inheritance, with Blomberg’s K ≈ 0 and Fritz & Purvis’ D = 0.51, consistent with environment-driven rather than phylogenetically conserved trait distributions. Both biofilm production and plastic degradation capacity showed significant environment-dependent differences in their relative frequencies (Fisher’s exact test, biofilm: p = 5.5 × 10⁻⁵; PCL degradation: p = 2.5 × 10⁻⁴) and were not directly associated with each other (Wilcoxon rank-sum test, p = 0.45; linear model, p = 0.68). Overall, these results indicate that microbial functional traits are unevenly distributed across environments and weakly constrained by taxonomy, consistent with the contribution of multiple, non-mutually exclusive processes that remain difficult to disentangle empirically. Full article

Two new species, Aprostocetus eucalyptus Zheng & Yefremova sp. nov. (Hymenoptera: Eulophidae) and Megastigmus bipolaris Zheng & Yefremova sp. nov. (Hymenoptera: Megastigmidae), were discovered on populations of the invasive gall wasp Ophelimus bipolaris (Hymenoptera: Eulophidae) infesting Eucalyptus in Guangxi, China. An integrative taxonomic approach combining morphological characterization and 28S rRNA-based phylogenetic analysis was used for species identification and classification. Detailed morphological descriptions, illustrations, and an identification key for both sexes are provided. Field parasitism data confirm their potential as native natural enemies, supporting their utility for the biological control of this economically important pest. Full article

Seasonal drought constitutes a major abiotic stress limiting the growth and yield of pineapple, a globally important Crassulacean acid metabolism (CAM) crop. The sucrose catabolism mediated by cell wall invertase (CWIN) plays a vital role in regulating plant growth and development, as well as adaptive responses to abiotic stresses. Invertase inhibitors (INHs) serve as specific post-translational regulators that modulate CWIN enzymatic activity. However, the INH family has not been systematically characterized in pineapple, and its functional roles in mediating sucrose metabolism and drought resistance remain elusive. In this study, three AcINHs were identified from the pineapple genome, followed by comprehensive analyses of their gene structures, phylogenetic relationships, homology characteristics and protein structures. Structural analysis revealed that all AcINH members harbor conserved motifs 1, 2, 3, 5 and 9, whereas only AcINH3 possesses motif 7. Expression analysis showed that only AcINH3 was significantly transcriptionally induced by drought stress among all family members. Functional validation demonstrated that AcINH3 knockout markedly elevated CWIN activity in pineapple seedling leaves, facilitating hexose accumulation and promoting plant growth and development. Moreover, AcINH3-edited lines exhibited enhanced drought resistance, accompanied by increased accumulation of soluble sugars (sucrose, glucose, fructose), abscisic acid (ABA), and proline (PRO), reduced malondialdehyde (MDA) content, and enhanced peroxidase (POD) activity. Biochemical assays further verified a direct physical interaction between AcINH3 and AcCWIN1, which mediates sucrose metabolism and drought stress responses. Collectively, this study identifies a novel AcINH3–AcCWIN1 post-translational module that modulates sugar metabolism and drought tolerance in pineapple, providing critical mechanistic insights for CAM plants. Our findings highlight AcINH3 as a promising target for genome-editing breeding to enhance drought resistance in CAM crops. Full article