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Keywords = paleoendemic

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16 pages, 8865 KiB  
Article
Climate-Driven Range Shifts of the Endangered Cercidiphyllum japonicum in China: A MaxEnt Modeling Approach
by Yuanyuan Jiang, Honghua Zhang, Jun Cui, Lei Zheng, Bingqian Ning and Danping Xu
Diversity 2025, 17(7), 467; https://doi.org/10.3390/d17070467 - 5 Jul 2025
Viewed by 281
Abstract
The relict tree Cercidiphyllum japonicum, a Tertiary paleoendemic with significant ecological and timber value, prefers warm–cool humid climates and acidic soils. Using MaxEnt and ArcGIS, we modeled its distribution under current and future climate scenarios (SSP, Shared Socioeconomic Pathways). High-suitability areas (>0.6 [...] Read more.
The relict tree Cercidiphyllum japonicum, a Tertiary paleoendemic with significant ecological and timber value, prefers warm–cool humid climates and acidic soils. Using MaxEnt and ArcGIS, we modeled its distribution under current and future climate scenarios (SSP, Shared Socioeconomic Pathways). High-suitability areas (>0.6 probability) under current conditions are mainly concentrated in the Sichuan Basin and the Yellow–Yangtze transition zones. By 2050, projections show northwestward expansions (14.32–18.76% increase in area) and eastward movement toward Central China under both SSP1-2.6 and SSP5-8.5 scenarios. However, by 2090, habitat loss could exceed 22% under SSP5-8.5. The main environmental drivers of its distribution are minimum coldest-month temperature (bio6, 38.7%), annual precipitation (bio12, 29.1%), and temperature range (bio7, 18.5%). Precipitation seasonality and thermal extremes are expected to become more significant constraints in the future. Conservation strategies should focus on the following: (1) protecting refugia in the Daba–Wushan mountains, (2) facilitating assisted migration to northwestern high-latitude regions, and (3) preserving microclimates. This study offers a framework for evidence-based conservation of paleoendemic species under climate change. Full article
(This article belongs to the Section Plant Diversity)
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29 pages, 2209 KiB  
Review
Phylogenetic Diversity in Forests: Insights into Evolutionary Patterns and Conservation Strategies
by Sajid Ali, Adnan Amin, Muhammad Saeed Akhtar and Wajid Zaman
Forests 2025, 16(6), 1004; https://doi.org/10.3390/f16061004 - 14 Jun 2025
Cited by 1 | Viewed by 1678
Abstract
Forests harbor most of the world’s terrestrial biodiversity; however, traditional conservation frameworks prioritize species richness over evolutionary diversity. Phylogenetic diversity (PD) reflects the complete evolutionary history contained within a community, offering a more comprehensive understanding of biodiversity. This review examines the theoretical foundations [...] Read more.
Forests harbor most of the world’s terrestrial biodiversity; however, traditional conservation frameworks prioritize species richness over evolutionary diversity. Phylogenetic diversity (PD) reflects the complete evolutionary history contained within a community, offering a more comprehensive understanding of biodiversity. This review examines the theoretical foundations of PD, highlights methodological advancements in its assessment, and discusses its conservation applications in forest ecosystems. We discuss key metrics, including Faith’s PD, mean pairwise distance (MPD), mean nearest taxon distance (MNTD), and indices, including the net relatedness index (NRI) and nearest taxon index (NTI), as well as analytical tools (Picante, Phylocom, Biodiverse) and frameworks like the categorical analysis of neo- and paleo-endemism (CANAPE) and the evolutionarily distinct and globally endangered (EDGE) index, evaluating their effectiveness in identifying evolutionarily significant conservation areas. We examine global and regional forest PD patterns, including elevational and latitudinal gradients, using case studies from the Pan-Himalayan region, Tibetan Plateau, and northern Pakistan, along with the environmental and anthropogenic drivers, e.g., soil pH, precipitation, land-use change, and invasive species, and historical biogeographic forces that shape lineage diversification. We emphasize the need for data standardization, regional research expansion, and the inclusion of PD in national biodiversity strategies and global policy frameworks. This review highlights the transformative potential of shifting from species-centric to evolutionarily informed conservation, and provides a critical framework for enhancing the long-term resilience and adaptive capacity of forest ecosystems. Full article
(This article belongs to the Section Forest Biodiversity)
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20 pages, 2830 KiB  
Article
Pharmacognostic Study of the Leaves of Ptilostemon greuteri Raimondo & Domina, a Rare Sicilian Paleoendemic Species
by Antonella Smeriglio, Domenico Trombetta, Laura Cornara, Paola Malaspina, Mariarosaria Ingegneri, Emilio Di Gristina, Enrico Bajona, Flavio Polito and Vincenzo De Feo
Plants 2025, 14(3), 370; https://doi.org/10.3390/plants14030370 - 26 Jan 2025
Cited by 1 | Viewed by 2966
Abstract
Ptilostemon greuteri Raimondo & Domina is a rare Sicilian paleoendemic species. The aim of study was to investigate the micro-morphological features of leaves by light and scanning electron microscopy, to elucidate the phytochemical profile of essential oil (EO), n-hexane (HE) and hydroalcoholic [...] Read more.
Ptilostemon greuteri Raimondo & Domina is a rare Sicilian paleoendemic species. The aim of study was to investigate the micro-morphological features of leaves by light and scanning electron microscopy, to elucidate the phytochemical profile of essential oil (EO), n-hexane (HE) and hydroalcoholic extract (HAE) by gas and liquid chromatographic methods, and antioxidant and anti-inflammatory properties by in vitro assays. Leaves had a large lanceolate blade, dark green on the upper side and greyish on the lower one with a dense tomentum. Epidermis showed many protruding stomata. By lipid-specific dyes, lipophilic droplets within cells surrounding the secretory ducts and within palisade cells were detected, whereas the presence of polyphenols in the mesophyll was highlighted by toluide blue O. These observations have driven the subsequent phytochemical analyses. EO showed germacrene D (29.94%), carvacrol (14.3%) and eugenol (12.93%) as the most abundant compounds. In the HE, docosane, oleic and palmit acid, and lupeol were the predominant compounds, whereas caffeoylquinic acid and quercetin derivatives were the most common polyphenols in HAE. Considering the detected mean half-inhibitory concentrations (IC50), HAE showed predominant antioxidant activity (IC50 30.54 µg/mL), while EO showed predominant anti-inflammatory activity (IC50 397.59 µg/mL). Finally, HE, rich in medium-to-long fatty acids, showed the best protease inhibitory activity Full article
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16 pages, 973 KiB  
Article
Nematicidal and Insecticidal Compounds from the Laurel Forest Endophytic Fungus Phyllosticta sp.
by Carmen E. Díaz, María Fe Andrés, Patricia Bolaños and Azucena González-Coloma
Molecules 2024, 29(19), 4568; https://doi.org/10.3390/molecules29194568 - 26 Sep 2024
Cited by 3 | Viewed by 1342
Abstract
The search for natural product-based biopesticides from endophytic fungi is an effective tool to find new solutions. In this study, we studied a pre-selected fungal endophyte, isolate YCC4, from the paleoendemism Persea indica, along with compounds present in the extract and the [...] Read more.
The search for natural product-based biopesticides from endophytic fungi is an effective tool to find new solutions. In this study, we studied a pre-selected fungal endophyte, isolate YCC4, from the paleoendemism Persea indica, along with compounds present in the extract and the identification of the insect antifeedant and nematicidal ones. The endophyte YCC4 was identified as Phyllosticta sp. by molecular analysis. The insect antifeedant activity was tested by choice bioassays against Spodoptera littoralis, Myzus persicae, and Rhopalosiphum padi, and the in vitro and in vivo mortality was tested against the root-knot nematode Meloidogyne javanica. Since the extract was an effective insect antifeedant, a strong nematicidal, and lacked phytotoxicity on tomato plants, a comprehensive chemical study was carried out. Two new metabolites, metguignardic acid (4) and (-)-epi-guignardone I (14), were identified along the known dioxolanones guignardic acid (1), ethyl guignardate (3), guignardianones A (5), C (2), D (7), and E (6), phenguignardic acid methyl ester (8), the meroterpenes guignardone A (9) and B (10), guignarenone B (11) and C (12), (-)-guignardone I (13), and phyllomeroterpenoid B (15). Among these compounds, 1 and 4 were effective antifeedants against S. littoralis and M. persicae, while 2 was only active on the aphid M. persicae. The nematicidal compounds were 4, 7, and 8. This is the first report on the insect antifeedant or nematicidal effects of these dioxolanone-type compounds. Since the insect antifeedant and nematicidal activity of the Phyllosticta sp. extract depend on the presence of dioxolanone components, future fermentation optimizations are needed to promote the biosynthesis of these compounds instead of meroterpenes. Full article
(This article belongs to the Special Issue Natural Products and Analogues with Promising Biological Profiles)
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25 pages, 2887 KiB  
Review
Climate Cycles, Habitat Stability, and Lineage Diversification in an African Biodiversity Hotspot
by Rauri C. K. Bowie, William B. Monahan and Jon Fjeldså
Diversity 2023, 15(3), 394; https://doi.org/10.3390/d15030394 - 9 Mar 2023
Cited by 2 | Viewed by 2813
Abstract
The Eastern Arc Mountains of Tanzania and Kenya, a montane archipelago of 13 uplifted fault blocks (sky islands) isolated by lowland arid savanna, are a center of exceptional biological endemism. Under the influence of humid winds from the Indian Ocean, forests and associated [...] Read more.
The Eastern Arc Mountains of Tanzania and Kenya, a montane archipelago of 13 uplifted fault blocks (sky islands) isolated by lowland arid savanna, are a center of exceptional biological endemism. Under the influence of humid winds from the Indian Ocean, forests and associated species may have persisted in this region since the final uplift of these blocks in the late Miocene. Today, these mountains are inhabited by a remarkable diversity of bird species. To better understand the evolutionary processes behind this diversity, we combined molecular phylogenetic studies of East African montane birds with paleoclimate modeling of its montane forests. Across its largest lowland barrier, the 125 km between the Usambara and Nguru/Nguu Mountains, 10 of the 14 bird lineages exhibited a phylogeographic break. Using Bayesian methods, we established that at least three periods of forest contraction and expansion affected the diversification of Eastern Arc birds. Habitat distribution models suggest that lower-elevation hills may have acted as stepping-stones connecting isolated highlands to allow for the dispersal of montane forest-dependent species across them. Periods of vicariance during paleoclimatic cycles extending back through the Last Glacial Maximum would have then isolated these populations within the highlands they had reached. The broad distribution of neoendemic species across the mountains of East Africa provides evidence of climate cycling as a driver of lineage diversification. The high incidence of narrow-range endemism of paleoendemic species on the Usambara, Uluguru, and Udzungwa Mountains of this region is harder to explain. Our paleoclimate models retrodicted the persistence of montane forest during climate cycles on several Eastern Arc sky islands but not on the Southern Tanzania Volcanic Highlands. Consistent with recent theoretical work, different rates of local extinction rather than increased rates of lineage diversification may explain the pattern of excessive narrow-range endemism on some sky islands over others. Thus, a regional filtering effect is generated, with paleoendemics maintaining populations through time only in areas where habitat persisted, providing a credible explanation for the dramatic variance in levels of endemism among different East African sky islands. Full article
(This article belongs to the Special Issue Diversity in 2022)
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53 pages, 6773 KiB  
Article
Diversity, Distribution, Systematics and Conservation Status of Podocarpaceae
by Raees Khan, Robert S. Hill, Jie Liu and Ed Biffin
Plants 2023, 12(5), 1171; https://doi.org/10.3390/plants12051171 - 3 Mar 2023
Cited by 9 | Viewed by 7754
Abstract
Among conifer families, Podocarpaceae is the second largest, with amazing diversity and functional traits, and it is the dominant Southern Hemisphere conifer family. However, comprehensive studies on diversity, distribution, systematic and ecophysiological aspects of the Podocarpaceae are sparse. We aim to outline and [...] Read more.
Among conifer families, Podocarpaceae is the second largest, with amazing diversity and functional traits, and it is the dominant Southern Hemisphere conifer family. However, comprehensive studies on diversity, distribution, systematic and ecophysiological aspects of the Podocarpaceae are sparse. We aim to outline and evaluate the current and past diversity, distribution, systematics, ecophysiological adaptations, endemism, and conservation status of podocarps. We analyzed data on the diversity and distribution of living and extinct macrofossil taxa and combined it with genetic data to reconstruct an updated phylogeny and understand historical biogeography. Podocarpaceae today contains 20 genera and approximately 219 taxa (201 species, 2 subspecies, 14 varieties and 2 hybrids) placed in three clades, plus a paraphyletic group/grade of four distinct genera. Macrofossil records show the presence of more than 100 podocarp taxa globally, dominantly from the Eocene–Miocene. Australasia (New Caledonia, Tasmania, New Zealand, and Malesia) is the hotspot of living podocarps diversity. Podocarps also show remarkable adaptations from broad to scale leaves, fleshy seed cones, animal dispersal, shrubs to large trees, from lowland to alpine regions and rheophyte to a parasite (including the only parasitic gymnosperm—Parasitaxus) and a complex pattern of seed and leaf functional trait evolution. Full article
(This article belongs to the Collection Advances in Plant Diversification and Biosystematics)
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17 pages, 6259 KiB  
Article
Diversity and Endemism of Southern African Gekkonids Linked with the Escarpment Has Implications for Conservation Priorities
by Gary K. Nicolau and Shelley Edwards
Diversity 2023, 15(2), 306; https://doi.org/10.3390/d15020306 - 20 Feb 2023
Cited by 3 | Viewed by 3613
Abstract
South Africa is recognised for its high reptile diversity and endemism, specifically among lizards. Phylogenetic diversity, endemism, and richness can have clear implications or raise important questions in a range of fields, and most urgently in conservation. Among squamate reptiles, these indices are [...] Read more.
South Africa is recognised for its high reptile diversity and endemism, specifically among lizards. Phylogenetic diversity, endemism, and richness can have clear implications or raise important questions in a range of fields, and most urgently in conservation. Among squamate reptiles, these indices are very commonly associated with high temperatures and topographic heterogeneity. Indeed, mountainous biogeography has been a critical driver in the radiation of the family Gekkonidae within the subregion. Here, we assess the species richness, diversity, and endemism of Gekkonidae species inhabiting South Africa, Lesotho, and Eswatini, accounting for phylogenetic relationships. We also employ the CANAPE method to identify regions that have neo- and/or paleoendemics. Southern African gekkonids appear to be most diverse and show high levels of endemism in three regions of Southern Africa: the northwestern Richtersveld, the escarpment running west to southeast, and the northeastern escarpment in the Limpopo province. Implications for conservation priorities are discussed. Full article
(This article belongs to the Special Issue Montane Ecosystems and Diversity)
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15 pages, 10143 KiB  
Article
Diversity of Silica-Scaled Chrysophytes (Stramenopiles: Chrysophyceae) from Indonesian Papua
by Evgeniy Gusev, Dmitry Kapustin, Nikita Martynenko and Maxim Kulikovskiy
Diversity 2022, 14(9), 726; https://doi.org/10.3390/d14090726 - 2 Sep 2022
Cited by 13 | Viewed by 2001
Abstract
The silica-scaled chrysophyte flora from Indonesian Papua was investigated by means of electron microscopy. A total of twenty-four taxa were recorded, including five belonging to Paraphysomonas, one to Chrysosphaerella, one to Spiniferomonas, fifteen to Mallomonas and two to Synura. [...] Read more.
The silica-scaled chrysophyte flora from Indonesian Papua was investigated by means of electron microscopy. A total of twenty-four taxa were recorded, including five belonging to Paraphysomonas, one to Chrysosphaerella, one to Spiniferomonas, fifteen to Mallomonas and two to Synura. Thirteen taxa were recorded for the first time in Indonesia. Comparison of the species composition of silica-scaled chrysophytes from different parts of the Island of New Guinea shows significant differences. A “living fossil” was discovered, Mallomonas preisigii, which was described previously from Eocene deposits in Northern Canada. Although the scales from Papua slightly differ from those of the fossil one, we believe they belong to the same morphospecies. Mallomonas preisigii can be considered as a paleoendemic species. Full article
(This article belongs to the Special Issue Algae Biodiversity: Natural and Anthropogenic Impacts)
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17 pages, 67214 KiB  
Article
Diversity of Ostrya carpinifolia Forests in Ravine Habitats of Serbia (S-E Europe)
by Dimitrije Sekulić, Branko Karadžić, Nevena Kuzmanović, Snežana Jarić, Miroslava Mitrović and Pavle Pavlović
Diversity 2021, 13(2), 59; https://doi.org/10.3390/d13020059 - 3 Feb 2021
Cited by 7 | Viewed by 2859
Abstract
We investigated vegetation in ravine habitats of Serbia, in order to classify hop hornbeam (Ostrya carpinifolia Scop.) forests in syntaxonomic terms, assess the effects of environmental factors on their floristic differentiation, and detect the biodiversity components of the analyzed communities. Both K-means [...] Read more.
We investigated vegetation in ravine habitats of Serbia, in order to classify hop hornbeam (Ostrya carpinifolia Scop.) forests in syntaxonomic terms, assess the effects of environmental factors on their floristic differentiation, and detect the biodiversity components of the analyzed communities. Both K-means clustering and Bayesian classification revealed five ecologically interpretable groups of forests that belong to the alliances Ostryo carpinifoliae-Fagion sylvaticae, Ostryo carpinifoliae-Tilion platyphylli, Fraxino orni-Ostryion carpinifoliae, Pseudofumario albae-Ostryion carpinifoliae, and Achilleo ageratifoliae-Ostryion carpinifoliae. Canonical correspondence analysis indicated that these alliances are clearly differentiated along a combined light–moisture gradient (from shade and mesic to sunny and xeric variants). The alpha diversity increases from xeric to mesic alliances. A lower alpha diversity in xeric forests may be explained by the stress conditions that prevent mesic species from colonizing the saxatile habitats. Extremely high—almost the greatest possible—values of both the species turnover and beta diversity were detected in all variants of the analyzed forests. Such high diversity may be the result of the strong environmental gradients in ravine habitats. The investigated forests represent an important pool of rare, paleo-endemic species that survived Quaternary glaciations in ravine refugia. Full article
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