Search Results (12)

(1) Forest fragmentation and associated edge effects can strongly modify the diversity and distribution of soil invertebrates, yet their responses in temperate floodplain forests remain poorly understood. We investigated myriapod (centipede and millipede) assemblages in a fragmented forest mosaic in the protected landscape area Litovelské Pomoraví (Czech Republic), focusing on the role of stand age, ecotones and key microhabitat variables. (2) Myriapods were sampled continuously during two years using pitfall traps arranged along transects crossing four neighboring patches (clear-cut with seedlings, 10-year-old stand, 87-year-old and 127-year-old Querco–Ulmetum forests). Species diversity was quantified using the Shannon–Wiener index, and patterns were analyzed by t-tests, canonical correspondence analysis and generalized additive models. (3) We collected over six thousand individuals (10 centipede and 10 millipede species). Diversity peaked in old-growth stands and adjacent ecotones, and two of the three ecotones supported particularly high species abundances. Litter cover and thickness, stand age, and the structure of the herb and shrub layers were the most important predictors of species distributions. Dominant species (e.g., Glomeris tetrasticha Brandt, 1833, Lithobius mutabilis L. Koch, 1862, L. forficatus (Linnaeus, 1758)) showed contrasting habitat preferences, reflecting niche differentiation along microhabitat and stand-age gradients. (4) Our findings indicate that conserving a fine-grained mosaic of stand ages, together with structurally complex forest interiors and ecotones, is essential for maintaining myriapod diversity and the ecosystem functions they provide in Central European forests. Full article

Background: Copy number variations (CNVs), also referred to as large genomic rearrangements (LGRs), represent a crucial component of BRCA1/2 (BRCA) testing. Next-generation sequencing (NGS) has become an established approach for detecting LGRs by combining sequencing data with dedicated bioinformatics pipelines. However, CNV detection in formalin-fixed paraffin-embedded (FFPE) samples remains technically challenging, and there is the need to implement a robust and optimized analysis strategy for routine clinical practice. Methods: This study evaluated 40 FFPE ovarian cancer (OC) samples from patients undergoing BRCA testing. The performance of the amplicon-based NGS Diatech Myriapod^® NGS BRCA1/2 panel (Diatech Pharmacogenetics, Jesi, Italy) was assessed for its ability to detect BRCA CNVs and results were compared to two hybrid capture-based reference assays. Results: Among the 40 analyzed samples (17 CNV-positive and 23 CNV-negative for BRCA genes), the Diatech pipeline showed a good concordance with the reference method—all CNVs were correctly identified in 16 cases with good enough sequencing quality. Only one result was inconclusive due to low sequencing quality. Conclusions: These findings support the clinical utility of NGS-based CNV analysis in FFPE samples when combined with appropriate bioinformatics tools. Integrating visual inspection of CNV plots with automated CNV calling improves the reliability of CNV detection and enhances the interpretation of results from tumor tissue. Accurate CNV detection directly from tumor tissue may reduce the need for additional germline testing, thus shortening turnaround times. Nevertheless, blood-based testing remains mandatory to determine whether detected BRCA CNVs are of hereditary or somatic origin, particularly in cases with a strong clinical suspicion of inherited predisposition due to young age and a personal and/or family history of OC. Full article

As one of the four primary evolutionary groups within myriapods, centipedes (Chilopoda) comprise approximately 3150 valid species. Recent molecular studies have begun to elucidate the phylogeny and time to divergence in Chilopoda; yet, identifying scutigeromorphs at the species level remains a notoriously challenging task. In this study, we obtained seven new complete mitogenomes of Thereuopoda clunifera (Wood, 1862) to investigate the phylogeny and divergence times of Chilopoda. Both maximum likelihood (ML) and Bayesian inference (BI) analyses recovered the relationship of (Scutigeromorpha + (Scolopendromorpha + (Lithobiomorpha + Geophilomorpha))). For Scutigeromorpha, seven newly sequenced mitogenomes of T. clunifera were divided into four distinct clades. Divergence time estimates suggest that the basal split of Chilopoda occurred during the Middle Ordovician period, with the origins of Scolopendromorpha, Lithobiomorpha, and Geophilomorpha dating to the Devonian period. Factors such as warm climates, coevolution between predator and prey, and the rifting of the Hainan Island may have driven the diversification of Scutigeromorpha. Based on genetic distance, the delimitation of molecular species, phylogenetic relationships, and divergence time analyses, we identified three cryptic species that existed within T. clunifera. This exceptionally high degree of hidden diversity can be ascribed to the morphological stasis that has occurred since the Paleozoic era and taxonomic impediment. Full article

The biodiversity of invertebrate animals is largely affected by climatic changes. This study evaluates the seasonal abundance and diversity of non-insect arthropods in the King Abdulaziz Royal Reserve (KARR), Saudi Arabia, over four collection periods (summer, autumn, winter, and spring) during 2023. Sampling was conducted across multiple sites in the reserve using both active (manual collection and active surveying for the diurnal species) and passive (pitfall traps and malaise traps for the nocturnal species) methods. A total of 586 non-insect arthropod specimens were collected, representing four classes: Arachnida, Chilopoda, Branchiopoda, and Malacostraca. The results show that the most abundant species was the jumping spider Plexippus paykulli, which dominated collections across two seasons, with a peak abundance of 50.7% in late summer. Seasonal variations in non-insect arthropod diversity were observed, with a lower diversity recorded during January–March (4 species, and this may be attributed to this period revealing the lowest temperature reading recorded during the study period) and higher diversity in August–September (end of summer) and October–November (mid of autumn), with 14 species. Scorpions, particularly species from the families Buthidae and Scorpionidae, were common during the summer months, while solifuges and centipedes showed sporadic occurrences across seasons. These findings align with the results for arthropod distribution in arid regions, with temperature and resource availability as key drivers of biodiversity in desert environments because of their direct effects on the biochemical processes of these creatures. This study contributes valuable baseline data on the non-insect arthropod fauna of the KARR. The insights gained from this study can aid in conservation efforts and provide a foundation for further research on non-insect arthropod ecology in arid landscapes. Full article

Agricultural land abandonment is an increasing concern in the EU, especially in Mediterranean regions where traditional perennial crops like olive groves are left unmanaged. This study focuses on the impact of land abandonment on soil-dwelling arthropods in olive groves in Monte Pisano, Tuscany, examining ants, spiders, myriapods, and carabids. Using Generalized Linear Mixed Models, the potential olive fruit fly predator community was analyzed over two sampling periods repeated over two years to assess the effects of both abandonment and its proximity to managed fields. Ants were significantly more abundant in managed fields next to abandoned ones, though there were no differences between managed and abandoned fields. Spider abundance did not respond to abandonment nor proximity. Myriapods were more abundant in abandoned fields during the first sampling period, but the proximity of an abandoned field had no effect. Carabids were more abundant in managed fields, especially those adjacent to other managed fields. These results indicate that arthropod responses to abandonment are taxon-specific, highlighting that a mosaic of managed and abandoned fields can both enhance and reduce olive fruit fly predator abundance. Conservation strategies should integrate varying management intensities to optimize biodiversity in Mediterranean agroecosystems. Future research should investigate long-term effects and specific predator responses to abandonment. Full article

Background: Comprehensive genomic profiling (CGP) has gained an important role in patients with advanced prostate cancer following the introduction of PARP inhibitors in daily clinical practice. Here, we report an overview of CGP results, specifically of BRCA1 and BRCA2 HRD-repair system genes, from patients with prostate cancer analyzed in our institution, and we compare our results with those available from more recent scientific literature. Methods: The study cohort consisted of 70 patients. Somatic DNA was extracted from Formalin-Fixed Paraffin-Embedded (FFPE) tissue using a MagCore Genomic DNA FFPE One-Step Kit for MagCore System. The DNA was quantified by EasyPGX^® Real-Time qPCR and EasyPGX^® Analysis Software (version 4.0.13). Tissue somatic DNA libraries were prepared with Myriapod^® NGS BRCA1-2 panel-NG035 and sequenced in a Mi-Seq^® System. The sequence alignment in hg19 and the variant calling were performed using Myriapod^® NGS Data Analysis Software version 5.0.8 NG900-SW 5.0.8 with a software detection limit (LoD) of 95%. Variants with a coverage of 500 and VAF% ≥ 5 were evaluated. Results: Tumor tissue NGS was unsuccessful in 46/70 patients (66%). Mutations of the BRCA2 gene were detected in 4 of the samples: (1) BRCA2 ex10 c.1244A>G p.His415Arg VAF = 51.03%; (2) BRCA2 ex11 c.5946delT p.Ser1982fs VAF = 72.1%; (3) BRCA2 ex11 c.3302A>G p.His1101Arg VAF = 52.9%; and (4) BRCA2 ex11 c.3195_3198delTAAT p.Asn1066fs VAF = 51.1%. Conclusions: The results from our internal overview seem to support the data and to confirm the performance of the technical issues reported in the literature. Considering the advanced age of our patients, with 84% of men over the age of 65, the application of alternative and less invasive procedures such as liquid biopsy, could be a more suitable solution for some cases. Full article

Invertebrates are a diverse group of animals that make up the majority of the animal kingdom and encompass a wide array of species with varying adaptations and characteristics. Invertebrates are found in nearly all of the world’s habitats, including aquatic, marine, and terrestrial environments. There are many misconceptions about invertebrate sentience, welfare requirements, the need for environmental enrichment, and overall care and husbandry for this amazing group of animals. This review addresses these topics and more for a select group of invertebrates with biomedical, economical, display, and human companionship importance. Full article

A meta-analysis based on the published literature was conducted to evaluate the breadth of host ranges of arthropod pathogens in the fungal subphylum Entomophthoromycotina. The majority of pathogens in this subphylum infect insects, although arachnids (especially mites), collembola, and myriapods are also used as hosts. Most species (76%) have specialized host ranges and only infect arthropods in one host family. The breadth of host ranges in the Entomophthoromycotina is generally greater for species in more basal groups (Conidiobolaceae and Neoconidiobolaceae), where most species are soil-borne saprobes and few are pathogens. The Batkoaceae is a transitionary family in which all species are pathogens and both generalists and specialists occur. Among pathogen-infecting insects, Hemiptera and Diptera are the most commonly infected insect orders. Within the Hemiptera, hosts in the suborder Sternorrhycha were infected by more fungal species than the Auchenorrhyncha and Heteroptera. Full article

Arthropods, the most diverse form of macroscopic life in the history of the Earth, originated in the sea. Since the early Cambrian, at least ~518 million years ago, these animals have dominated the oceans of the world. By the Silurian–Devonian, the fossil record attests to arthropods becoming the first animals to colonize land, However, a growing body of molecular dating and palaeontological evidence suggests that the three major terrestrial arthropod groups (myriapods, hexapods, and arachnids), as well as vascular plants, may have invaded land as early as the Cambrian–Ordovician. These dates precede the oldest fossil evidence of those groups and suggest an unrecorded continental “Cambrian explosion” a hundred million years prior to the formation of early complex terrestrial ecosystems in the Silurian–Devonian. We review the palaeontological, phylogenomic, and molecular clock evidence pertaining to the proposed Cambrian terrestrialization of the arthropods. We argue that despite the challenges posed by incomplete preservation and the scarcity of early Palaeozoic terrestrial deposits, the discrepancy between molecular clock estimates and the fossil record is narrower than is often claimed. We discuss strategies for closing the gap between molecular clock estimates and fossil data in the evolution of early ecosystems on land Full article

Due to the limitations of taxon sampling and differences in results from the available data, the phylogenetic relationships of the Myriapoda remain contentious. Therefore, we try to reconstruct and analyze the phylogenetic relationships within the Myriapoda by examining mitochondrial genomes (the mitogenome). In this study, typical circular mitogenomes of Mecistocephalus marmoratus and Scolopendra subspinipes were sequenced by Sanger sequencing; they were 15,279 bp and 14,637 bp in length, respectively, and a control region and 37 typical mitochondrial genes were annotated in the sequences. The results showed that all 13 PCGs started with ATN codons and ended with TAR codons or a single T; what is interesting is that the gene orders of M. marmoratus have been extensively rearranged compared with most Myriapoda. Thus, we propose a simple duplication/loss model to explain the extensively rearranged genes of M. marmoratus, hoping to provide insights into mitogenome rearrangement events in Myriapoda. In addition, our mitogenomic phylogenetic analyses showed that the main myriapod groups are monophyletic and supported the combination of the Pauropoda and Diplopoda to form the Dignatha. Within the Chilopoda, we suggest that Scutigeromorpha is a sister group to the Lithobiomorpha, Geophilomorpha, and Scolopendromorpha. We also identified a close relationship between the Lithobiomorpha and Geophilomorpha. The results also indicate that the mitogenome can be used as an effective mechanism to understand the phylogenetic relationships within Myriapoda. Full article

Urban systems often support large numbers of non-native species, but due to the heterogeneity of urban landscapes, species are not evenly distributed. Understanding the drivers of ecological resistance in urban landscapes may help to identify habitats that are most resistant to invasion, and inform efforts to model and conserve native biodiversity. We used pitfall traps to survey non-native ground-dwelling arthropods in three adjacent, low-elevation habitat types in southern California: California sage scrub, non-native grassland, and suburban development. We found that non-native species were fewer and less widely distributed in the sage scrub and grassland habitats. Due to the proximity of our sites, differences in propagule pressure is an unlikely explanation. Instead, we suggest that the absence of water subsidies in the sage scrub and grassland habitats increases those habitats’ resistance to arthropod invasions. Comparisons to studies conducted at fragments closer to the coast provide further support for the relationship between aridity and invasibility in southern California. Our findings highlight that inland fragments are important for conserving native arthropod diversity, that models of non-native species distributions in arid and semi-arid urban systems should include aridity measures, and that reducing resource subsidies across the region is critical to mitigating spread of non-natives. Full article

Floodplain forests and wetlands are amongst the most diverse and species rich habitats on earth. Arthropods are a key group for the high diversity pattern of these landscapes, due to the fact that the change between flooding and drought causes in different life cycles and in a variety of adaptations in the different taxa. The floodplain forests and wetlands of Central Amazonia are well investigated and over the last 50 years many adaptations of several hexapod, myriapod and arachnid orders were described. In contrast to Amazonia the Middle European floodplains were less investigated concerning the adaptations of arthropods to flood and drought conditions. This review summarizes the adaptations and predispositions of springtails, web spiders, millipedes and centipedes to the changeable flood and drought conditions of Middle European floodplain forests and wetlands. Furthermore the impact of regional climate change predictions like increasing aperiodic summer floods and the decrease of typical winter and spring floods are discussed in this article. Full article