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17 pages, 2099 KiB  
Article
Selection of Probiotics for Honey Bees: The In Vitro Inhibition of Paenibacillus larvae, Melissococcus plutonius, and Serratia marcescens Strain Sicaria by Host-Specific Lactobacilli and Bifidobacteria
by Buse Dengiz, Jiří Killer, Jaroslav Havlík, Pavel Dobeš and Pavel Hyršl
Microorganisms 2025, 13(5), 1159; https://doi.org/10.3390/microorganisms13051159 - 20 May 2025
Viewed by 1019
Abstract
Host-specific Lactobacillus and Bifidobacterium species constitute the core microbiota of the honey bee digestive tract and are recognized for their probiotic properties. One of the properties of these bacteria is the inhibition of bacterial pathogens such as Paenibacillus larvae and Melissococcus plutonius, [...] Read more.
Host-specific Lactobacillus and Bifidobacterium species constitute the core microbiota of the honey bee digestive tract and are recognized for their probiotic properties. One of the properties of these bacteria is the inhibition of bacterial pathogens such as Paenibacillus larvae and Melissococcus plutonius, the causative agents of American and European foulbrood, respectively. Additionally, Serratia marcescens has emerged as a relevant opportunistic pathogen. Although several previously published studies have examined the inhibition of selected bacterial pathogens of bees by members of the bee physiological microbiota, none have simultaneously investigated the inhibition of multiple clinical isolates of P. larvae, M. plutonius, and S. marcescens using a wide range of bifidobacterial and lactobacilli strains isolated from various locations within a single country. Thus, this study evaluated the antimicrobial potential of Lactobacillus and Bifidobacterium strains against these pathogens, with a focus on strain-dependent inhibition. A total of 111 bacterial strains (62 Lactobacillus and 49 Bifidobacterium) were isolated from the digestive tracts of honey bees collected from eight sites across the Czech Republic. Using 16S rRNA gene sequencing, the isolates were classified and tested in vitro against four P. larvae isolates, one M. plutonius isolate, and the S. marcescens strain sicaria in modified BHI medium. Twenty-eight strains (~26%) exhibited strong inhibition (≥21 mm) against at least two P. larvae isolates, while 12 strains showed moderate inhibition (16–20 mm) against all four isolates. Inhibition of M. plutonius and S. marcescens was observed in three and twenty strains, respectively. The most effective strains belonged to Bifidobacterium asteroides, B. choladohabitans, B. polysaccharolyticum, Lactobacillus apis, L. helsingborgensis, L. kullabergensis, and L. melliventris. These results underscore the strain-dependent nature of antimicrobial activity and highlight the importance of selecting probiotic strains with broad-spectrum pathogen inhibition to support honey bee health. Full article
(This article belongs to the Special Issue Applied Gut Molecular Microbiology Technology)
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8 pages, 1341 KiB  
Review
Chemical Synthesis in the Circumstellar Environment
by Sun Kwok
Galaxies 2025, 13(2), 36; https://doi.org/10.3390/galaxies13020036 - 3 Apr 2025
Cited by 1 | Viewed by 564
Abstract
We discuss the spectral distinctions between B[e] stars and compact planetary nebulae. The differentiation between proto-planetary nebulae, transition objects between the asymptotic giant branch and planetary nebulae, and reflection nebulae in binary systems is also discussed. Infrared and millimeter-wave observations have identified many [...] Read more.
We discuss the spectral distinctions between B[e] stars and compact planetary nebulae. The differentiation between proto-planetary nebulae, transition objects between the asymptotic giant branch and planetary nebulae, and reflection nebulae in binary systems is also discussed. Infrared and millimeter-wave observations have identified many inorganic and organic molecules, as well as solid-state minerals, in the circumstellar environment. There is evidence that complex organics in the form of mixed aromatic/aliphatic nanoparticles (MAONs) are synthesized during the proto-planetary nebulae phase of evolution. Their ejection into the interstellar medium may have enriched the primordial Solar System, and the complex organics found in comets, asteroids, and planetary satellites could be stellar in origin. Full article
(This article belongs to the Special Issue Circumstellar Matter in Hot Star Systems)
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27 pages, 1824 KiB  
Article
Short-Term Consequences of Asteroid Impacts into the Ocean: A Portuguese Case Study
by Renato H. Morais, Luís F. F. M. Santos, André R. R. Silva and Rui Melicio
Universe 2022, 8(5), 279; https://doi.org/10.3390/universe8050279 - 10 May 2022
Cited by 3 | Viewed by 3818
Abstract
Asteroid impacts are a proven global threat, meaning that any location on Earth might be a subject to their consequences. Such collisions are not likely in any person’s lifetime, but their aftermath could be catastrophic. As Earth’s surface is mostly water, a water [...] Read more.
Asteroid impacts are a proven global threat, meaning that any location on Earth might be a subject to their consequences. Such collisions are not likely in any person’s lifetime, but their aftermath could be catastrophic. As Earth’s surface is mostly water, a water impact is more probable than a ground impact, and tsunami waves could pose a significant threat. This study expands the knowledge about asteroid impacts in the ocean and their regional environmental consequences. Three asteroids were assumed to impact the Earth: (1) the Apophis asteroid, a 370 m wide asteroid, (2) a 204 m in diameter asteroid representative of the average impactor on the near-Earth objects, and (3) a 5 km in diameter asteroid. We evaluated the consequences of all impacts for a specific case study, where the chosen impact location was the midpoint between Portugal’s mainland, Azores, and Madeira Islands. The cratering process, generated seismic shaking, overpressure, ejected material, induced thermal radiation, and tsunami waves were assessed, along with the global effects. The overpressure mainly causes structural damage. The thermal radiation can be devastating but has a short reach. The tsunami is undoubtedly the most far-reaching and threatening effect of an asteroid impact in the ocean. Full article
(This article belongs to the Special Issue Small Bodies in the Solar System)
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36 pages, 3396 KiB  
Review
Tracing the Primordial Chemical Life of Glycine: A Review from Quantum Chemical Simulations
by Albert Rimola, Nadia Balucani, Cecilia Ceccarelli and Piero Ugliengo
Int. J. Mol. Sci. 2022, 23(8), 4252; https://doi.org/10.3390/ijms23084252 - 12 Apr 2022
Cited by 21 | Viewed by 5438
Abstract
Glycine (Gly), NH2CH2COOH, is the simplest amino acid. Although it has not been directly detected in the interstellar gas-phase medium, it has been identified in comets and meteorites, and its synthesis in these environments has been simulated in terrestrial [...] Read more.
Glycine (Gly), NH2CH2COOH, is the simplest amino acid. Although it has not been directly detected in the interstellar gas-phase medium, it has been identified in comets and meteorites, and its synthesis in these environments has been simulated in terrestrial laboratory experiments. Likewise, condensation of Gly to form peptides in scenarios resembling those present in a primordial Earth has been demonstrated experimentally. Thus, Gly is a paradigmatic system for biomolecular building blocks to investigate how they can be synthesized in astrophysical environments, transported and delivered by fragments of asteroids (meteorites, once they land on Earth) and comets (interplanetary dust particles that land on Earth) to the primitive Earth, and there react to form biopolymers as a step towards the emergence of life. Quantum chemical investigations addressing these Gly-related events have been performed, providing fundamental atomic-scale information and quantitative energetic data. However, they are spread in the literature and difficult to harmonize in a consistent way due to different computational chemistry methodologies and model systems. This review aims to collect the work done so far to characterize, at a quantum mechanical level, the chemical life of Gly, i.e., from its synthesis in the interstellar medium up to its polymerization on Earth. Full article
(This article belongs to the Collection Feature Papers in 'Physical Chemistry and Chemical Physics')
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18 pages, 6442 KiB  
Article
Did a Complex Carbon Cycle Operate in the Inner Solar System?
by Joseph A. Nuth, Frank T. Ferguson, Hugh G. M. Hill and Natasha M. Johnson
Life 2020, 10(9), 206; https://doi.org/10.3390/life10090206 - 16 Sep 2020
Cited by 3 | Viewed by 2856
Abstract
Solids in the interstellar medium consist of an intimate mixture of silicate and carbonaceous grains. Because 99% of silicates in meteorites were reprocessed at high temperatures in the inner regions of the Solar Nebula, we propose that similar levels of heating of carbonaceous [...] Read more.
Solids in the interstellar medium consist of an intimate mixture of silicate and carbonaceous grains. Because 99% of silicates in meteorites were reprocessed at high temperatures in the inner regions of the Solar Nebula, we propose that similar levels of heating of carbonaceous materials in the oxygen-rich Solar Nebula would have converted nearly all carbon in dust and grain coatings to CO. We discuss catalytic experiments on a variety of grain surfaces that not only produce gas phase species such as CH4, C2H6, C6H6, C6H5OH, or CH3CN, but also produce carbonaceous solids and fibers that would be much more readily incorporated into growing planetesimals. CH4 and other more volatile products of these surface-mediated reactions were likely transported outwards along with chondrule fragments and small Calcium Aluminum-rich Inclusions (CAIs) to enhance the organic content in the outer regions of the nebula where comets formed. Carbonaceous fibers formed on the surfaces of refractory oxides may have significantly improved the aggregation efficiency of chondrules and CAIs. Carbonaceous fibers incorporated into chondritic parent bodies might have served as the carbon source for the generation of more complex organic species during thermal or hydrous metamorphic processes on the evolving asteroid. Full article
(This article belongs to the Special Issue Chemical Evolution of Organic Molecules in Solar System Small Bodies)
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25 pages, 5944 KiB  
Article
Multiscale Computational Simulation of Amorphous Silicates’ Structural, Dielectric, and Vibrational Spectroscopic Properties
by José Ángel Martínez-González, Javier Navarro-Ruiz and Albert Rimola
Minerals 2018, 8(8), 353; https://doi.org/10.3390/min8080353 - 15 Aug 2018
Cited by 11 | Viewed by 7222
Abstract
Silicates are among the most abundant and important inorganic materials, not only in the Earth’s crust, but also in the interstellar medium in the form of micro/nanoparticles or embedded in the matrices of comets, meteorites, and other asteroidal bodies. Although the crystalline phases [...] Read more.
Silicates are among the most abundant and important inorganic materials, not only in the Earth’s crust, but also in the interstellar medium in the form of micro/nanoparticles or embedded in the matrices of comets, meteorites, and other asteroidal bodies. Although the crystalline phases of silicates are indeed present in nature, amorphous forms are also highly abundant. Here, we report a theoretical investigation of the structural, dielectric, and vibrational properties of the amorphous bulk for forsterite (Mg2SiO4) as a silicate test case by a combined approach of classical molecular dynamics (MD) simulations for structure evolution and periodic quantum mechanical Density Functional Theory (DFT) calculations for electronic structure analysis. Using classical MD based on an empirical partial charge rigid ionic model within a melt-quenching scheme at different temperatures performed with the GULP 4.0 code, amorphous bulk structures for Mg2SiO4 were generated using the crystalline phase as the initial guess. This has been done for bulk structures with three different unit cell sizes, adopting a super-cell approach; that is, 1 × 1 × 2, 2 × 1 × 2, and 2 × 2 × 2. The radial distribution functions indicated a good degree of amorphization of the structures. Periodic B3LYP-geometry optimizations performed with the CRYSTAL14 code on the generated amorphous systems were used to analyze their structure; to calculate their high-frequency dielectric constants (ε); and to simulate their IR, Raman, and reflectance spectra, which were compared with the experimental and theoretical crystalline Mg2SiO4. The most significant changes of the physicochemical properties of the amorphous systems compared to the crystalline ones are presented and discussed (e.g., larger deviations in the bond distances and angles, broadening of the IR bands, etc.), which are consistent with their disordered nature. It is also shown that by increasing the unit cell size, the bulk structures present a larger degree of amorphization. Full article
(This article belongs to the Special Issue Computational Methods in Mineralogy and Geochemistry)
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12 pages, 364 KiB  
Article
Simulations of Prebiotic Chemistry under Post-Impact Conditions on Titan
by Carol Turse, Johannes Leitner, Maria Firneis and Dirk Schulze-Makuch
Life 2013, 3(4), 538-549; https://doi.org/10.3390/life3040538 - 17 Dec 2013
Cited by 7 | Viewed by 9278
Abstract
The problem of how life began can be considered as a matter of basic chemistry. How did the molecules of life arise from non-biological chemistry? Stanley Miller’s famous experiment in 1953, in which he produced amino acids under simulated early Earth conditions, was [...] Read more.
The problem of how life began can be considered as a matter of basic chemistry. How did the molecules of life arise from non-biological chemistry? Stanley Miller’s famous experiment in 1953, in which he produced amino acids under simulated early Earth conditions, was a huge leap forward in our understanding of this problem. Our research first simulated early Earth conditions based on Miller’s experiment and we then repeated the experiment using Titan post-impact conditions. We simulated conditions that could have existed on Titan after an asteroid strike. Specifically, we simulated conditions after a potential strike in the subpolar regions of Titan that exhibit vast methane-ethane lakes. If the asteroid or comet was of sufficient size, it would also puncture the icy crust and bring up some of the subsurface liquid ammonia-water mixture. Since, O’Brian, Lorenz and Lunine showed that a liquid water-ammonia body could exist between about 102–104 years on Titan after an asteroid impact we modified our experimental conditions to include an ammonia-water mixture in the reaction medium. Here we report on the resulting amino acids found using the Titan post-impact conditions in a classical Miller experimental reaction set-up and how they differ from the simulated early Earth conditions. Full article
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8 pages, 143 KiB  
Article
On the Applicability of the Green Chemistry Principles to Sustainability of Organic Matter on Asteroids
by Vera M. Kolb
Sustainability 2010, 2(6), 1624-1631; https://doi.org/10.3390/su2061624 - 4 Jun 2010
Cited by 11 | Viewed by 9071
Abstract
The connection between astrobiology and green chemistry represents a new approach to sustainability of organic matter on asteroids or similar bodies. Green chemistry is chemistry which is environmentally friendly. One obvious way for chemistry to be green is to use water as a [...] Read more.
The connection between astrobiology and green chemistry represents a new approach to sustainability of organic matter on asteroids or similar bodies. Green chemistry is chemistry which is environmentally friendly. One obvious way for chemistry to be green is to use water as a solvent, instead of more toxic organic solvents. Many astrobiological reactions occur in the aqueous medium, for example in the prebiotic soup or during the aqueous alteration period on asteroids. Thus any advances in the green organic reactions in water are directly applicable to astrobiology. Another green chemistry approach is to abolish use of toxic solvents. This can be accomplished by carrying out the reactions without a solvent in the solventless or solid-state reactions. The advances in these green reactions are directly applicable to the chemistry on asteroids during the periods when water was not available. Many reactions on asteroids may have been done in the solid mixtures. These reactions may be responsible for a myriad of organic compounds that have been isolated from the meteorites. Full article
(This article belongs to the Special Issue Astrobiology and Sustainability)
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