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Keywords = liquid-crystalline dispersions of DNA

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17 pages, 11484 KiB  
Article
Optical Polymorphism of Liquid–Crystalline Dispersions of DNA at High Concentrations of Crowding Polymer
by Vladimir N. Morozov, Mikhail A. Klimovich, Anna V. Shibaeva, Olga N. Klimovich, Ekaterina D. Koshevaya, Maria A. Kolyvanova and Vladimir A. Kuzmin
Int. J. Mol. Sci. 2023, 24(14), 11365; https://doi.org/10.3390/ijms241411365 - 12 Jul 2023
Cited by 5 | Viewed by 1464
Abstract
Optically active liquid–crystalline dispersions (LCD) of nucleic acids, obtained by polymer- and salt-induced (psi-) condensation, e.g., by mixing of aqueous saline solutions of low molecular weight DNA (≤106 Da) and polyethylene glycol (PEG), possess an outstanding circular dichroism (CD) signal [...] Read more.
Optically active liquid–crystalline dispersions (LCD) of nucleic acids, obtained by polymer- and salt-induced (psi-) condensation, e.g., by mixing of aqueous saline solutions of low molecular weight DNA (≤106 Da) and polyethylene glycol (PEG), possess an outstanding circular dichroism (CD) signal (so-called psi-CD) and are of interest for sensor applications. Typically, such CD signals are observed in PEG content from ≈12.5% to ≈22%. However, in the literature, there are very conflicting data on the existence of psi-CD in DNA LCDs at a higher content of crowding polymer up to 30–40%. In the present work, we demonstrate that, in the range of PEG content in the system above ≈24%, optically polymorphic LCDs can be formed, characterized by both negative and positive psi-CD signals, as well as by ones rather slightly differing from the spectrum of isotropic DNA solution. Such a change in the CD signal is determined by the concentration of the stock solution of PEG used for the preparation of LCDs. We assume that various saturation of polymer chains with water molecules may affect the amount of active water, which in turn leads to a change in the hydration of DNA molecules and their transition from B-form to Z-form. Full article
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10 pages, 1601 KiB  
Article
A Principal Approach to the Detection of Radiation-Induced DNA Damage by Circular Dichroism Spectroscopy and Its Dosimetric Application
by Maria A. Kolyvanova, Mikhail A. Klimovich, Alexandr V. Belousov, Vladimir A. Kuzmin and Vladimir N. Morozov
Photonics 2022, 9(11), 787; https://doi.org/10.3390/photonics9110787 - 23 Oct 2022
Cited by 6 | Viewed by 2174
Abstract
Using cholesteric liquid-crystalline dispersion (CLCD) of DNA, we demonstrate that the molecularly organized systems may be used both for qualitative assessment of the degree of radiation-induced DNA damage, as well as for detection of radiation doses in a very wide range. The doses [...] Read more.
Using cholesteric liquid-crystalline dispersion (CLCD) of DNA, we demonstrate that the molecularly organized systems may be used both for qualitative assessment of the degree of radiation-induced DNA damage, as well as for detection of radiation doses in a very wide range. The doses up to 500 Gy do not cause any significant changes in optical signals of DNA in solution. However, when irradiated molecules are used to prepare the CLCD by addition of crowding polymer, a clear correlation of its optical signals with an absorbed dose is observed. For example, at a dose of 500 Gy, a maximum drop in the circular dichroism (CD) signal for DNA solution and for CLCD formed from preliminary irradiated molecules is ≈20% and ≈700%, respectively. This approach can also be used to expand the dosimetric capabilities of DNA CLCD. Compared to the case of irradiation of ready-made DNA CLCD, formation of the dispersed system from irradiated DNA allows to increase its sensitivity by more than 2 orders of magnitude. A similar decrease in the CD signal (≈1.45-fold) is observed in these systems at the doses of 100 kGy and 200 Gy, respectively. This principal approach seems to be relevant for other biomolecules and molecularly organized systems. Full article
(This article belongs to the Topic Liquid Crystal Photonics)
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13 pages, 2356 KiB  
Article
DNA Origami Nano-Sheets and Nano-Rods Alter the Orientational Order in a Lyotropic Chromonic Liquid Crystal
by Bingru Zhang, Kevin Martens, Luisa Kneer, Timon Funck, Linh Nguyen, Ricarda Berger, Mihir Dass, Susanne Kempter, Jürgen Schmidtke, Tim Liedl and Heinz-S. Kitzerow
Nanomaterials 2020, 10(9), 1695; https://doi.org/10.3390/nano10091695 - 28 Aug 2020
Cited by 5 | Viewed by 3706
Abstract
Rod-like and sheet-like nano-particles made of desoxyribonucleic acid (DNA) fabricated by the DNA origami method (base sequence-controlled self-organized folding of DNA) are dispersed in a lyotropic chromonic liquid crystal made of an aqueous solution of disodium cromoglycate. The respective liquid crystalline nanodispersions are [...] Read more.
Rod-like and sheet-like nano-particles made of desoxyribonucleic acid (DNA) fabricated by the DNA origami method (base sequence-controlled self-organized folding of DNA) are dispersed in a lyotropic chromonic liquid crystal made of an aqueous solution of disodium cromoglycate. The respective liquid crystalline nanodispersions are doped with a dichroic fluorescent dye and their orientational order parameter is studied by means of polarized fluorescence spectroscopy. The presence of the nano-particles is found to slightly reduce the orientational order parameter of the nematic mesophase. Nano-rods with a large length/width ratio tend to preserve the orientational order, while more compact stiff nano-rods and especially nano-sheets reduce the order parameter to a larger extent. In spite of the difference between the sizes of the DNA nano-particles and the rod-like columnar aggregates forming the liquid crystal, a similarity between the shapes of the former and the latter seems to be better compatible with the orientational order of the liquid crystal. Full article
(This article belongs to the Section Nanofabrication and Nanomanufacturing)
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27 pages, 6705 KiB  
Review
Liquid-Crystalline Dispersions of Double-Stranded DNA
by Yuri Yevdokimov, Sergey Skuridin, Viktor Salyanov, Sergey Semenov and Efim Kats
Crystals 2019, 9(3), 162; https://doi.org/10.3390/cryst9030162 - 20 Mar 2019
Cited by 12 | Viewed by 4402
Abstract
In this review, we compare the circular dichroism (CD) spectra of liquid-crystalline dispersion (LCD) particles formed in PEG-containing aqueous-salt solutions with the purpose of determining the packing of ds DNA molecules in these particles. Depending on the osmotic pressure of the solution, the [...] Read more.
In this review, we compare the circular dichroism (CD) spectra of liquid-crystalline dispersion (LCD) particles formed in PEG-containing aqueous-salt solutions with the purpose of determining the packing of ds DNA molecules in these particles. Depending on the osmotic pressure of the solution, the phase exclusion of ds DNA molecules at room temperature results in the formation of LCD particles with the cholesteric or the hexagonal packing of molecules. The heating of dispersion particles with the hexagonal packing of the ds DNA molecules results in a new phase transition, accompanied by an appearance of a new optically active phase of ds DNA molecules. Our results are rationalized by way of a concept of orientationally ordered “quasinematic” layers formed by ds DNA molecules, with a parallel alignment in the hexagonal structure. These layers can adopt a twisted configuration with a temperature increase; and as a result of this process, a new, helicoidal structure of dispersion particle is formed (termed as the “re-entrant” cholesteric phase). To prove the cholesteric pattern of ds DNA molecules in this phase, the “liquid-like” state of the dispersion particles was transformed into its “rigid” counterpart. Full article
(This article belongs to the Special Issue Advances in Cholesteric Liquid Crystals)
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17 pages, 378 KiB  
Review
Dispersability of Carbon Nanotubes in Biopolymer-Based Fluids
by Franco Tardani and Camillo La Mesa
Crystals 2015, 5(1), 74-90; https://doi.org/10.3390/cryst5010074 - 16 Jan 2015
Cited by 5 | Viewed by 6511
Abstract
In this review the dispersability of carbon nanotubes in aqueous solutions containing proteins, or nucleic acids, is discussed. Data reported previously are complemented by unpublished ones. In the mentioned nanotube-based systems several different phases are observed, depending on the type and concentration of [...] Read more.
In this review the dispersability of carbon nanotubes in aqueous solutions containing proteins, or nucleic acids, is discussed. Data reported previously are complemented by unpublished ones. In the mentioned nanotube-based systems several different phases are observed, depending on the type and concentration of biopolymer, as well as the amount of dispersed nanotubes. The phase behavior depends on how much biopolymers are adsorbing, and, naturally, on the molecular details of the adsorbents. Proper modulation of nanotube/biopolymer interactions helps switching between repulsive and attractive regimes. Dispersion or phase separation take place, respectively, and the formation of liquid crystalline phases or gels may prevail with respect to dispersions. We report on systems containing ss-DNA- and lysozyme-stabilized nanotubes, representative of different organization modes. In the former case, ss-DNA rolls around CNTs and ensures complete coverage. Conversely, proteins randomly and non-cooperatively adsorb onto nanotubes. The two functionalization mechanisms are significantly different. A fine-tuning of temperature, added polymer, pH, and/or ionic strength conditions induces the formation of a given supra-molecular organization mode. The biopolymer physico-chemical properties are relevant to induce the formation of different phases made of carbon nanotubes. Full article
(This article belongs to the Special Issue Carbon Nanostructures)
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