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Keywords = interspecific hybrid variety

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16 pages, 1327 KB  
Article
Chromosome Analysis of Mitosis on Interspecific Hybrid Progenies on (Fagopyrum tataricum) with Golden Buckwheat (Fagopyrum cymosum Complex)
by Fan Zhang, Lian Tang, Lijuan Yang, Ziyang Liu, Yuanzhi Cheng, Hongyou Li, Taoxiong Shi and Qingfu Chen
Agronomy 2026, 16(2), 190; https://doi.org/10.3390/agronomy16020190 - 13 Jan 2026
Viewed by 124
Abstract
Tartary buckwheat has increasingly become the focus of people’s attention due to its powerful health benefits. Golden buckwheat is a traditional Chinese medicine. People have begun to utilize it through wide hybridization to further enhance the health benefits of Tartary buckwheat. To study [...] Read more.
Tartary buckwheat has increasingly become the focus of people’s attention due to its powerful health benefits. Golden buckwheat is a traditional Chinese medicine. People have begun to utilize it through wide hybridization to further enhance the health benefits of Tartary buckwheat. To study the genetic stability of the interspecific hybrids of Tartary buckwheat with golden buckwheat, and to provide scientific basis for the interspecific cross breeding of buckwheat, the mitotic chromosomes of two buckwheat double lines and their interspecific hybrids with golden buckwheat were subjected to observe the karyotypes. The results showed as follows: (1) The two autotetraploid Tartary buckwheat lines (Long Black-4T and Daku-1) have chromosome number 2n = 32. The karyotype formula of 2n = 4x = 32 consisted of 16 pairs of metacentric chromosomes for Long Black-4T (TTTT) while Daku-1 (TTTT) has 1sm + 7m Gui Jinqiao 4 with 2n = 32 has a karyotype formula of 2n = 4x = 32 that consisted 1sm + 6m + 1M (genome M) and 2sm + 5m + 1M (genome M’). The normal fertile tetraploid hybrid F1 plants between Long Black-4T and Gui Jinqiao 4 has 2n = 4x = [1sm + 7m (M), 1sm + 7m (M’), 14m + 2M (TT)]. The normal fertile variety Gui Jinku 1 from the above hybrid progenies shows 2n = 4x = [3sm + 5m (M), 2sm + 6m (M’), 16m (TT)], indicating an increment of sm chromosomes by rearrangements of chromosome structure in the M and M’ genomes. The above parents and their hybrids with the MM’TT genome show fertility. A plant from F2 of the above cross, showing highly infertility, has 2n = 3x= [1sm + 7m (M), 1sm + 7m (M’), 8m (T)]; and back cross progeny plant from Daku 1/Gui Jinqiao 4 F2//Gui Jinqiao 2 golden buckwheat has 2n = 4x = [16m (MM), 5sm + 3m (M’), 1sm + 7m (T)], showed high infertility, which is caused by genome aneuploidy and non-even ploidy. The above shows that there are obvious variations of genome karyotypes from the same parent, indicated by certain chromosome structural rearrangements in genomes T, M, and M’. Full article
(This article belongs to the Section Crop Breeding and Genetics)
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20 pages, 5981 KB  
Article
Field Evaluations of Two Citrus Interspecific Hybrid Populations Using Desert Lime (Citrus glauca (Lindl.) Burkill) Identify Presumed Resistance and Tolerance to Huanglongbing
by Maria B. Besilla-Renteria, Vicente J. Febres and Jose X. Chaparro
Agronomy 2025, 15(10), 2407; https://doi.org/10.3390/agronomy15102407 - 16 Oct 2025
Viewed by 780
Abstract
Huanglongbing (HLB), associated with the bacterial pathogen Candidatus Liberibacter asiaticus (CLas), is one of the most destructive diseases affecting citrus. Although some citrus cultivars are tolerant of the disease, no commercially resistant varieties exist to date. Resistance, however, has been identified [...] Read more.
Huanglongbing (HLB), associated with the bacterial pathogen Candidatus Liberibacter asiaticus (CLas), is one of the most destructive diseases affecting citrus. Although some citrus cultivars are tolerant of the disease, no commercially resistant varieties exist to date. Resistance, however, has been identified in the sexually compatible distant relative, the Australian desert lime (C. glauca) and its F1 hybrids. In an effort to develop commercial varieties with resistance to HLB, we produced interspecific hybrid populations between an HLB-resistant C. glauca × C. maxima F1 hybrid and two mandarins (C. reticulata). The progenies were evaluated under natural CLas infection conditions in Florida for infection status, disease symptom severity, and growth to determine whether resistance or tolerance was manifested. After four years of evaluations, using two cluster analyses (K-means and hierarchical cluster), three groups were identified: (1) progeny that was uninfected, had very low infection levels or recovered from infection, and also had low defoliation and above average growth, (2) progeny that was infected and showed high defoliation and below average growth, and (3) progeny that was infected with generally high titters, low defoliation and above average growth. Overall, these results indicate the interspecific hybrid progeny in the field segregated into apparent resistant, susceptible and tolerant trees. Full article
(This article belongs to the Section Crop Breeding and Genetics)
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15 pages, 1849 KB  
Article
Embryonic and Larval Development of an Interspecific Grouper Backcross Between the Kelp Grouper (Epinephelus moara) ♀ and KGGG (E. moara ♀ × E. lanceolatus ♂) ♂
by Yidan Xu, Yongsheng Tian, Shihao Wang, Tangtang Ding, Linna Wang, Zhentong Li, Linlin Li and Yang Liu
Fishes 2025, 10(10), 488; https://doi.org/10.3390/fishes10100488 - 1 Oct 2025
Cited by 2 | Viewed by 941
Abstract
Backcrossing serves as an effective tool for interspecific gene introgression, facilitating germplasm improvement. To develop superior grouper aquaculture varieties, in this study, a backcrossed breed was constructed by crossing a male hybrid grouper, KGGG (Epinephelus moara ♀ × E. lanceolatus ♂), with [...] Read more.
Backcrossing serves as an effective tool for interspecific gene introgression, facilitating germplasm improvement. To develop superior grouper aquaculture varieties, in this study, a backcrossed breed was constructed by crossing a male hybrid grouper, KGGG (Epinephelus moara ♀ × E. lanceolatus ♂), with a female parent kelp grouper (KG; E. moara). Here, we observed embryonic, larval development, and morphological changes in KG × KGGG. Additionally, the total length and body weight of the backcrossed breed and maternal parent were compared at 160 d post hatching (dph). The results showed that fertilization and the hatching rate were 73.23 ± 4.23% and 51.74 ± 3.67%, respectively, and the egg size was 0.89 ± 0.03 mm. Hatching occurred 23:19 h after fertilization at 25 ± 1 °C, and the newly hatched larvae were 1.94 ± 0.13 mm in length. Furthermore, at 160 dph, the total length and body weight of the backcrossed breed were 1.2-fold and 1.9-fold greater, respectively, when compared with those of the maternal parent. Importantly, it is possible that backcrossed KG × KGGG could become a dominant strain in grouper aquaculture practices. Full article
(This article belongs to the Special Issue Germplasm Resources and Genetic Breeding of Aquatic Animals)
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15 pages, 5277 KB  
Review
Research Progress on High-Protein Peanut (Arachis hypogaea L.) Varieties in China
by Zhuo Li, Yaru Zhang, Yinghui Liu, Yi Fan, Ding Qiu, Zhongfeng Li, Fangping Gong and Dongmei Yin
Plants 2025, 14(18), 2917; https://doi.org/10.3390/plants14182917 - 19 Sep 2025
Cited by 1 | Viewed by 1333
Abstract
Peanut (Arachis hypogaea L.) protein, as a precursor to various amino acids and bioactive peptides, determines the flavor and nutritional quality of peanut products. Therefore, high protein content is one of the target traits in advanced peanut breeding programs. In this review, [...] Read more.
Peanut (Arachis hypogaea L.) protein, as a precursor to various amino acids and bioactive peptides, determines the flavor and nutritional quality of peanut products. Therefore, high protein content is one of the target traits in advanced peanut breeding programs. In this review, we summarized the characteristics of all currently available high-protein peanut varieties in China and provided a comprehensive analysis of the genetic, physical characteristics, and disease resistance. These varieties mostly were developed through interspecific hybridization or selected from mutants of self-pollinated parents, primarily using the cultivars “Silihong” and “Baisha 1016” as main parental lines. In terms of disease resistance, although most high-protein peanut varieties can resist two to four types of disease, few varieties exhibit resistance to multiple diseases, and some varieties show no resistance for tested disease or lack sufficient experimental validation. The genetic basis of high-protein peanuts is relatively narrow, relying mainly on a small number of parental varieties. The findings of this review provide important references for high-protein peanut breeding, highlighting the existing problems and challenges in current breeding efforts and emphasizing the importance of broadening the genetic base, enhancing disease resistance breeding, and optimizing overall quality. This review offers theoretical and practical guidance for future breeding of high-quality, high-yield, and high-protein peanut varieties, contributing to the sustainable development and quality improvement of the peanut industry. Full article
(This article belongs to the Section Crop Physiology and Crop Production)
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16 pages, 2702 KB  
Article
Cytological Observation of Distant Hybridization Barrier and Preliminary Investigation of Hybrid Offspring in Tea Plants
by Xiaoli Mo, Yihao Wang, Yahui Huang, Zhen Zeng and Changyu Yan
Plants 2025, 14(13), 2061; https://doi.org/10.3390/plants14132061 - 5 Jul 2025
Cited by 1 | Viewed by 1152
Abstract
The undertaking of distant hybridization holds paramount significance for the innovation of tea germplasm resources and the cultivation of superior, specialized tea varieties. However, challenges manifest during the process of tea plant distant hybridization breeding, with reproductive barriers impeding the successful acquisition of [...] Read more.
The undertaking of distant hybridization holds paramount significance for the innovation of tea germplasm resources and the cultivation of superior, specialized tea varieties. However, challenges manifest during the process of tea plant distant hybridization breeding, with reproductive barriers impeding the successful acquisition of hybrid progeny; the precise stages at which these barriers occur remain unclear. In this study, utilizing Camellia sinensis cv. Jinxuan as the maternal parent, as well as C. gymnogyna Chang and C. sinensis cv. Yinghong No.9 as the paternal parents, interspecific distant hybridization (DH) and intraspecific hybridization (IH) were conducted. The investigation involved the observation of pollen germination and pollen tube behavior on the stigma, the scrutiny of the developmental dynamics of the ovary post-hybridization, and the examination of the stages and reasons for reproductive disorders during tea tree distant hybridization. The findings indicate that both IH and DH exhibit pre-fertilization barriers. The pre-embryonic development of hybrids obtained from DH is normal, but there is a significant fruit drop during the stage of fruit development. The germination rate of mature seeds obtained from DH is low, and there are pronounced post-fertilization disorders, which are the primary reasons for the difficulty in achieving successful tea plant distant hybridization. An analysis of the genetic variation in phenotypes and chemical components in the progeny after distant hybridization revealed widespread variation and rich genetic diversity. The identification of progeny with a high amino acid and caffeine content holds promise for future production and breeding, providing valuable theoretical references for the selection of parents in the creation of low-caffeine-content tea germplasm resources. Full article
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17 pages, 2072 KB  
Article
Macrostructure of Malus Leaves and Its Taxonomic Significance
by Yuerong Fan, Huimin Li, Jingze Ma, Ting Zhou, Junjun Fan and Wangxiang Zhang
Plants 2025, 14(13), 1918; https://doi.org/10.3390/plants14131918 - 22 Jun 2025
Cited by 1 | Viewed by 1096
Abstract
Leaves are the most ubiquitous plant organs, whose macrostructures exhibit close correlations with environmental factors while simultaneously reflecting inherent genetic and evolutionary patterns. These characteristics render them highly significant for plant taxonomy, ecology, and related disciplines. Therefore, this study presents the first comprehensive [...] Read more.
Leaves are the most ubiquitous plant organs, whose macrostructures exhibit close correlations with environmental factors while simultaneously reflecting inherent genetic and evolutionary patterns. These characteristics render them highly significant for plant taxonomy, ecology, and related disciplines. Therefore, this study presents the first comprehensive evaluation of Malus leaf macrostructures for infraspecific classification. By establishing a trait-screening system, we conducted a numerical taxonomic analysis of leaf phenotypic variation across 73 Malus germplasm (34 species and 39 cultivars). Through ancestor-inclined distribution characteristic analysis, we investigated phylogenetic relationships at both the genus level and infraspecific ranks within Malus. A total of 21 leaf phenotypic traits were selected from 50 candidate traits based on the following criteria: high diversity, abundance, and evenness (D ≥ 0.50, H ≥ 0.80, and E ≥ 0.60); significant intraspecific uniformity and interspecific distinctness (CV¯ ≤ 10% and CV ≥ 15%). Notably, the selected traits with low intraspecific variability (CV¯ ≤ 10%) exhibit environmental robustness, likely reflecting low phenotypic plasticity of these specific traits under varying conditions. This stability enhances their taxonomic utility. It was found that the highest ancestor-inclined distribution probability reached 90% for 10 traceable cultivars, demonstrating reliable breeding lines. Based on morphological evidence, there was a highly significant correlation between the evolutionary orders of (Sect. Docyniopsis → Sect. Sorbomalus → Sect. Malus) and group/sub-groups (B1 → B2 → A). This study demonstrates that phenotypic variation in leaf macrostructures can effectively explore the affinities among Malus germplasm, exhibiting taxonomic significance at the infraspecific level, thereby providing references for variety selection. However, hybrid offspring may exhibit mixed parental characteristics, leading to blurred species boundaries. And convergent evolution may create false homologies, potentially misleading morphology-based taxonomic inferences. The inferred taxonomic relationships present certain limitations that warrant further investigation. Full article
(This article belongs to the Section Plant Development and Morphogenesis)
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22 pages, 2975 KB  
Article
Diversity of Pummelos (Citrus maxima (Burm.) Merr.) and Grapefruits (Citrus x aurantium var. paradisi) Inferred by Genetic Markers, Essential Oils Composition, and Phenotypical Fruit Traits
by François Luro, Elodie Marchi, Gilles Costantino, Mathieu Paoli and Félix Tomi
Plants 2025, 14(12), 1824; https://doi.org/10.3390/plants14121824 - 13 Jun 2025
Viewed by 3005
Abstract
Pummelo (Citrus maxima) is an ancestral species that has given rise to several major citrus varieties, such as sweet orange (C. x aurantium var. sinensis) and grapefruit (C. x aurantium var. paradisi). This species is also cultivated [...] Read more.
Pummelo (Citrus maxima) is an ancestral species that has given rise to several major citrus varieties, such as sweet orange (C. x aurantium var. sinensis) and grapefruit (C. x aurantium var. paradisi). This species is also cultivated and its fruit consumed, particularly in Asia. Over the course of evolution, the allogamous reproduction of pummelos and the absence of asexual multiplication have contributed to its diversification. To assess its phenotypic diversity and the chemical composition of leaf and peel essential oils, genetic analysis using DNA markers is an essential prerequisite to ensure the identity and if varieties belong to this species. Fifty-eight accessions classified as grapefruits or pummelos were analyzed using 42 SSRs, 4 Indels, and 36 SNP markers. Based on the allelic composition of these markers, 20 cultivars were detected belonging to pummelos, 18 cultivars to grapefruits, and 11 were interspecific hybrids. The grapefruit inter-cultivar SSR diversity is null. The genetic origin of five interspecific hybrids is elucidated. The level of phenotypic diversity and of essential oil composition corroborate the modes of diversification, with high levels for those resulting from crosses and very low levels for the group of grapefruit mutants. Only the characteristics of breeding selection (pulp color, acidity and aspermia) are variable in grapefruits. In the composition of leaf essential oils (LEOs), nine profiles were detected in grapefruits based on variations in six compounds (neral, geranial, β-phellandrene, γ-terpinene, (E)-β-ocimene, and β-pinene). The seven interspecific hybrids involving pummelo as one parent show particular LEO profiles but without specific compounds, with the exception of p-cymenene which is present only in Wheeny. The diversity of peel essential oils in pummelos is lower, but variations in γ-terpinene, β-pinene, limonene, and myrcene make it possible to define seven profiles. With genetic verification the chemical and phenotypic diversity of the two species, pummelo and grapefruit, revealed in this study can be used as a reference for behavior in a specific environment. Full article
(This article belongs to the Special Issue Bio-Active Compounds in Horticultural Plants—2nd Edition)
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16 pages, 3469 KB  
Article
Phenotypic Characters and Inheritance Tendency of Agronomic Traits in F1 Progeny of Pear
by Xiaojie Zhang, Mengyue Tang, Jiamei Li, Yue Chi, Kexin Wang, Jianying Peng and Yuxing Zhang
Plants 2025, 14(10), 1491; https://doi.org/10.3390/plants14101491 - 16 May 2025
Cited by 1 | Viewed by 1059
Abstract
Studying fruit genetic trends, heterosis, and growth traits in pear hybrid progeny provides the foundation for variety breeding. The aim of this research is to reveal the trait performance of the hybrid progeny of Chinese white pear and Western pear and provide a [...] Read more.
Studying fruit genetic trends, heterosis, and growth traits in pear hybrid progeny provides the foundation for variety breeding. The aim of this research is to reveal the trait performance of the hybrid progeny of Chinese white pear and Western pear and provide a theoretical basis for other breeders to predict the trait performance of their hybrid progeny when selecting Eastern pear and Western pear as parents. Our research team constructed a ‘Yuluxiang’ × ‘Xianghongli’ interspecific hybrid population in 2015, and in 2023, we conducted a two-year investigation of 16 traits in 140 hybrid progeny, including 11 fruit traits and 5 growth traits, and analyzed and compared the genetic variation and heterosis of traits, as well as the correlation between various traits. The results showed that the hybrid progeny was widely segregated for single fruit weight (FW), soluble solid (SS) content, and titratable acid (TA) content and conformed to a normal distribution, with quantitative genetic traits under polygenic control. The highest two-year coefficients of variation for TA were 54.42% in 2023 and 39.17% in 2024. A genetic trend of decreasing FW was observed, which was greatly influenced by the male sex. The ratio of soft soluble flesh to crispy flesh was 1:1, and the gene controlling this trait may be a quality trait controlled by a single gene. The traits that showed transgressive heterosis for two years included fruit longitudinal diameter (FLoD), fruit shape index (FSI), and TA, and those that showed negative heterosis included FW, SS, leaf longitudinal diameter (LLoD), and leaf lateral diameter (LLaD). Correlation analysis indicated that the progeny of crosses in this combination, which had red fruit skin, may also present red early flowering color (EFC) and young leaf color (YLC), reddish brown annual branch color (ABC), and lower FSI, fruit stalk length (FSL), LLaD, and TA. Thus, at the seedling stage, individuals with red-colored fruit may be screened by observing the color of young leaves and young stems and the lateral diameter of the leaves. Principal component analysis showed that among the 16 traits included in six principal components, peel color (PC), FLoD, 2024SS, fruit tape (FT), and FSI were the main factors causing differences in fruit phenotypes. This study systematically elucidated the genetic trends of agronomic traits in pears and will provide a theoretical basis for the selection of parents and early selection of hybrid progeny in pear hybrid breeding. Full article
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20 pages, 5619 KB  
Article
Interspecific Hybridization Barrier Between Paeonia ostii and P. ludlowii
by Yingzi Guo, Yan Zhang, Yanli Wang, Guodong Zhao, Wenqing Jia and Songlin He
Plants 2025, 14(7), 1120; https://doi.org/10.3390/plants14071120 - 3 Apr 2025
Viewed by 1078
Abstract
Paeonia ludlowii is a threatened and valuable germplasm in the cultivated tree peony gene pool, with distinctive traits such as tall stature, pure yellow flowers, and scarlet foliage in autumn. However, the crossability barrier limits gene transfer from P. ludlowii to cultivated tree [...] Read more.
Paeonia ludlowii is a threatened and valuable germplasm in the cultivated tree peony gene pool, with distinctive traits such as tall stature, pure yellow flowers, and scarlet foliage in autumn. However, the crossability barrier limits gene transfer from P. ludlowii to cultivated tree peony. Therefore, our study investigated the reasons for the lack of crossability between P. ludlowii and Paeonia ostii ‘Fengdan’. Distant cross pollination (DH) resulted in the formation of many calloses at the ends of the pollen tubes, which grew non-polar, twisted, entangled, and often stopped in the style. Pollen tubes elongated the fastest in self-pollination (CK), and pollen tubes elongated faster and fewer pollen tube abnormalities were observed in stigmas treated with KCl solution before pollination (KH) than in DH. During pollen–pistil interactions, the absence of stigma exudates, high levels of H2O2, O2, MDA, OH, ABA, and MeJA, and lower levels of BR and GA3 may negatively affect pollen germination and pollen tube elongation in the pistil of P. ostii ‘Fengdan’. Pollen tubes in CK and KH penetrated the ovule into the embryo sac at 24 h after pollination, whereas only a few pollen tubes in DH penetrated the ovule at 36 h after pollination. Pre-embryo abnormalities and the inhibition of free nuclear endosperm division resulted in embryo abortion in most of the fruits of DH and many fruits of KH, which occurred between 10 and 20 days after pollination, whereas embryos in CK developed well. Early embryo abortion and endosperm abortion in most of the fruits of DH and KH led to seed abortion. Seed abortion in KH and DH was mainly due to an insufficient supply of auxins and gibberellins and lower content of soluble protein and soluble sugars. The cross failure between P. ludlowii and P. ostii ‘Fengdan’ is mostly caused by a pre-fertilization barrier. KH treatment can effectively promote pollen tube growth and facilitate normal development of hybrid embryos. These findings provide new insights into overcoming the interspecific hybridization barrier between cultivated tree peony varieties and wild species. Full article
(This article belongs to the Section Plant Development and Morphogenesis)
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17 pages, 10910 KB  
Article
Oligo-FISH-Based Analysis of the Mechanisms Underlying Chromosome Number Variation in Saccharum spontaneum
by Maoyong Ran, Bo Yu, Chunxia Cheng, Xueting Li, Yirong Guo, Liping Zhao, Fenggang Zan, Xiuqin Lin, Xiao Hou, Yong Zhao, Jiayong Liu and Zuhu Deng
Int. J. Mol. Sci. 2025, 26(5), 1958; https://doi.org/10.3390/ijms26051958 - 24 Feb 2025
Cited by 1 | Viewed by 1263
Abstract
Interspecific hybridization serves as a crucial strategy for innovating sugarcane germplasms. Currently, nearly all modern sugarcane varieties that incorporate genetic material are derived from Saccharum spontaneum. The number of chromosomes in S. spontaneum ranges from 40 to 128, contributing significantly to the [...] Read more.
Interspecific hybridization serves as a crucial strategy for innovating sugarcane germplasms. Currently, nearly all modern sugarcane varieties that incorporate genetic material are derived from Saccharum spontaneum. The number of chromosomes in S. spontaneum ranges from 40 to 128, contributing significantly to the diversity of its genetic resources. However, the genetic mechanisms driving chromosome number variation in S. spontaneum remain to be fully elucidated. Here, oligonucleotide fluorescence in situ hybridization (Oligo-FISH) was conducted to identify individual chromosomes and explore chromosome transmission during the intraspecific hybridization of S. spontaneum. The results indicate that from the progenies generated from S. spontaneum Yunnan2017-22 (2n = 8x = 64) and Yunnan82-1 (2n = 8x = 64) emerged two distinct karyotypes, 2n = 12x = 96 (A1) and 2n = 8x = 64 (A2, A33-1, A18). This implies that the chromosome inheritances were 2n + n and n + n in the progenies. However, self-pollinated samples of A1 (2n = 12x = 96) produced normal offspring C1 (2n = 94) and C2 (2n = 96). The 2n + n inheritance pattern did not continue. In another cross, the progenies derived from S. spontaneum Yunnan2017-41 (2n = 8x = 64) and Yunnan8 (2n = 10x = 80) carried a karyotype of 2n = 9x = 72, with n + n inheritance mode. These findings highlight the existence of two chromosome inheritance modes, 2n + n and n + n, in the context of the intraspecific hybridization of S. spontaneum. Additionally, hybridization between different ploidy S. spontaneum was also accompanied by chromosomal translocations (A1, A2, A18, A18) and loss (A2, A33-1, AA-4, and C2) that further resulted in the complexity of the S. spontaneum genome. Together, these findings highlight diverse chromosome inheritance in S. spontaneum hybridization, and provide a theoretical foundation for the further utilization of S. spontaneum germplasm in sugarcane breeding. Full article
(This article belongs to the Special Issue Genetics and Breeding for Sugar Crops)
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18 pages, 3192 KB  
Article
Construction of Genetic Linkage Maps Using SSR Markers and Identification of Flower Bud-Related QTLs in Nightlily (Hemerocallis citrina)
by Feifan Hou, Xufei Liang, Rui Chen, Xuan Ji, Hongtao Li, Mengyue Jing, Yang Gao, Yuting Liu, Sen Li, Guoming Xing and Yanfang Wang
Agronomy 2025, 15(3), 534; https://doi.org/10.3390/agronomy15030534 - 22 Feb 2025
Cited by 2 | Viewed by 1640
Abstract
Nightlily (Hemerocallis citrina Baroni) is an important vegetable with edible floral organs. It possesses considerable economic value due to its edibility, ornamental, and medicinal properties. However, the genetic linkage map construction and quantitative trait locus (QTL) mapping of nightlily have not been [...] Read more.
Nightlily (Hemerocallis citrina Baroni) is an important vegetable with edible floral organs. It possesses considerable economic value due to its edibility, ornamental, and medicinal properties. However, the genetic linkage map construction and quantitative trait locus (QTL) mapping of nightlily have not been performed. This study used two varieties ‘Dongzhuanghuanghua’ and ‘Chonglihua’ of nightlily as cross parents to establish an intraspecific hybridization population of 120 F1 progenies. The ‘Datonghuanghua’ (female) variety of nightlily and ‘Lullaby Baby’ (male) variety of daylily were selected to construct an interspecific hybridization population of 55 F1 progenies. A total of 965 expressed sequence tag–simple sequence repeats (EST-SSRs), along with 20 SSR markers from various sources, were used for genetic mapping. Among these markers, CT/TC (9.24%) of the dinucleotide and GGA/GAG/AGG (4.67%) of the trinucleotide repeat motifs were most abundant. In the intraspecific hybridization genetic map, a total of 124 markers were resolved into 11 linkage groups, with a total map length of 1535.07 cM and an average interval of 12.38 cM. Similarly, the interspecific hybridization map contained 11 linkage groups but with 164 markers, a total map length of 2517.06 cM, and an average interval of 15.35 cM. The two constructed maps had 48 identical markers and demonstrated good collinearity. The collinearity analysis showed that 161 markers hit the genomic sequence of the published H. citrina genome, indicating that the two constructed genetic maps had high accuracy. Phenotypic data were investigated over two consecutive years (2018 and 2019) for flower bud fresh weight, dry weight, and bud length in two hybridization populations. A total of nine QTLs associated with flower bud-related traits were identified, among which those located on linkage group 8 of the intraspecific genetic map and linkage group 4 of the interspecific genetic map showed good stability. All nine QTLs had LOD values of not less than 4 and PVE values of not less than 15% over two years. This is the first report about the intra- and interspecific genetic map construction and QTL mapping of the flower bud-related traits in nightlily based on a genetic map. The results promote marker-assisted breeding and offer insights into the mechanisms underlying important traits of the genus Hemerocallis. Full article
(This article belongs to the Section Horticultural and Floricultural Crops)
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18 pages, 3994 KB  
Article
Genetic Diversity of the Collection of Far Eastern Actinidia spp. Revealed by RAD Sequencing Technology
by Natalia Slobodova, Maria Gladysheva-Azgari, Fedor Sharko, Kristina Petrova, Eugenia Boulygina, Svetlana Tsygankova and Irina Mitrofanova
Plants 2025, 14(1), 7; https://doi.org/10.3390/plants14010007 - 24 Dec 2024
Cited by 1 | Viewed by 1389
Abstract
More than ten species of the Actinidia Lindl. genus bear edible fruits rich in biologically active compounds, which are essential and beneficial for human health. The most popular cultivars today are the large-fruited Actinidia species, A. deliciosa and A. chinensis, commonly known [...] Read more.
More than ten species of the Actinidia Lindl. genus bear edible fruits rich in biologically active compounds, which are essential and beneficial for human health. The most popular cultivars today are the large-fruited Actinidia species, A. deliciosa and A. chinensis, commonly known as kiwi. However, small-fruited kiwi cultivars are gaining prominence due to their high nutritional value, superior cold resistance, and suitability for temperate climates. In Russia, these are represented by Far Eastern species: A. arguta, A. kolomikta, and A. polygama. Despite increasing consumer interest, Russian Actinidia cultivars remain little studied, with fragmented genetic data available for breeding purposes. Our objective was to analyze the Actinidia collection at the Federal Horticultural Center for Breeding, Agrotechnology, and Nursery and the N.V. Tsitsin Main Botanical Garden (MBG RAS, Moscow), which includes samples from four species, A. kolomikta, A. arguta, A. polygama, A. purpurea, interspecific hybrids, and derived varieties, using RAD sequencing. We assessed the genetic variability of all species, identified population groups within A. kolomikta and A. arguta based on origin, determined ploidy levels across the collection, and identified a set of SNP markers associated with valuable agronomic traits. Full article
(This article belongs to the Special Issue Domestication and Genetics of Horticultural Plants)
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15 pages, 3806 KB  
Article
Evaluation of the Genome Size and Ploidy Level of Pears (Pyrus spp.) in Relation to Their Morphological Traits
by Jonáš Fiala, Eliška Zezulová and Tomáš Nečas
Horticulturae 2024, 10(12), 1241; https://doi.org/10.3390/horticulturae10121241 - 22 Nov 2024
Viewed by 1657
Abstract
In this study, 53 pear genotypes were evaluated, including 19 Asian varieties, 7 botanical species and 13 new interspecific hybrids. The ploidy level and nuclear DNA content were determined by flow cytometry. In addition, the morphological traits and their possible correlations with the [...] Read more.
In this study, 53 pear genotypes were evaluated, including 19 Asian varieties, 7 botanical species and 13 new interspecific hybrids. The ploidy level and nuclear DNA content were determined by flow cytometry. In addition, the morphological traits and their possible correlations with the genome size were analyzed. One triploid genotype was found. The Asian varieties had a lower average genome size (553.4 Mbp) than the European varieties (564.1 Mbp). The average nuclear DNA content was 1.14 pg/2C for the diploid genotypes and 1.77 pg/2C DNA for the triploids. The Asian varieties had significantly larger leaves than the European ones. Pyrus calleryana had the smallest flowers and P. Caucasica the largest, but the varieties showed no significant differences in flower size. The pollen grain size ranged from 37.7 to 59.0 μm. However, there were no significant correlations between the genotype groups or genome sizes. The Asian cultivars had, on average, smaller stomata (28.4 μm) than the European cultivars (31.6 μm). The largest stomata size was measured for the triploid genotypes (37.9 μm). There was a positive correlation between the genome size and stomatal length and a negative correlation between the genome size and leaf length, leaf width and flower diameter. Full article
(This article belongs to the Section Genetics, Genomics, Breeding, and Biotechnology (G2B2))
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21 pages, 5011 KB  
Article
The Phenology of Coffea arabica var. Esperanza L4A5 Under Different Agroforestry Associations and Fertilization Conditions in the Caribbean Region of Costa Rica
by Victor Hugo Morales Peña, Argenis Mora Garcés, Elias de Melo Virginio Filho, Mario Villatoro Sánchez, Willy William Pazmiño Pachay and Esteban Chanto Ares
Agriculture 2024, 14(11), 1988; https://doi.org/10.3390/agriculture14111988 - 6 Nov 2024
Cited by 1 | Viewed by 3384
Abstract
This study focused on the phenology of Coffea arabica var. Esperanza L4A5, an F1 interspecific hybrid obtained by crossing commercial varieties with wild genotypes from Ethiopia and Sudan. Most phenological studies on C. arabica have been conducted in traditional high-altitude regions, leaving a [...] Read more.
This study focused on the phenology of Coffea arabica var. Esperanza L4A5, an F1 interspecific hybrid obtained by crossing commercial varieties with wild genotypes from Ethiopia and Sudan. Most phenological studies on C. arabica have been conducted in traditional high-altitude regions, leaving a gap in the understanding of its behavior in non-traditional areas such as the Caribbean region of Costa Rica. To establish a baseline on the phenological behavior of the Esperanza L4A5 hybrid in this region, we conducted a four-year study examining the effects of different agroforestry associations: (1) Albizia saman; (2) Hymenaea courbaril and Erythrina poeppigiana; (3) Anacardium excelsum and Erythrina poeppigiana; and coffee plots under full sun. Additionally, the phenology of the coffee plants was evaluated under differentiated fertilizations (physical, chemical, and without fertilization), considering meteorological factors such as temperature, humidity, and rainfall. The observed variables included the development of floral nodes, pre-anthesis, anthesis, and fruiting stages. To analyze the relationships between environmental factors, tree cover, fertilization, and the phenological stages, we employed multiple linear regression (MLR), which revealed that both tree cover and physical and chemical fertilizations had significant effects on the presence of developed floral nodes and, consequently, on fruit production. Furthermore, the random forest (RF) model was applied to capture complex interactions between variables and to rank the importance of meteorological factors, tree cover, and fertilization practices. These analyses demonstrated that the Esperanza L4A5 hybrid exhibited viable phenological development under the atypical conditions of the Caribbean region of Costa Rica, suggesting its potential to adapt and thrive in non-traditional coffee-growing areas. Full article
(This article belongs to the Special Issue Agroforestry Systems: Strategies for Mitigating Climate Change)
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14 pages, 3909 KB  
Article
Diversity of Improved Diploids and Commercial Triploids from Musa spp. via Molecular Markers
by Juliana Rodrigues Sampaio, Wanderley Diaciso dos Santos Oliveira, Luiz Carlos de Souza Junior, Fernanda dos Santos Nascimento, Ricardo Franco Cunha Moreira, Andresa Priscila de Souza Ramos, Janay Almeida dos Santos-Serejo, Edson Perito Amorim, Renata Darilia Moraes de Jesus and Claudia Fortes Ferreira
Curr. Issues Mol. Biol. 2024, 46(11), 11783-11796; https://doi.org/10.3390/cimb46110700 - 22 Oct 2024
Cited by 6 | Viewed by 2151
Abstract
Banana breeding consists of obtaining diploid, triploid, and tetraploid intra- and interspecific hybrids by conventional breeding methods with the objective of aggregating characteristics of agronomic and commercial interest. Given the narrow genetic base of bananas, Embrapa’s Banana Genetic Breeding Program (BGBP) aims at [...] Read more.
Banana breeding consists of obtaining diploid, triploid, and tetraploid intra- and interspecific hybrids by conventional breeding methods with the objective of aggregating characteristics of agronomic and commercial interest. Given the narrow genetic base of bananas, Embrapa’s Banana Genetic Breeding Program (BGBP) aims at crosses between improved diploids (ID) (ID × ID) and between improved diploids (ID) and commercial triploids (ID × CTP) and tetraploids (ID × CTT), in order to increase the genetic base and variability in bananas regarding agronomic traits of interest and resistance to main biotic and abiotic factors. These improved diploids are resistant to main fungal diseases such as yellow (YSD) and black Sigatoka (BSD) disease and Fusarium wilt (race 1 and subtropical race 4), the latter being one of the most devastating diseases in bananas. The genetic diversity between 22 improved diploids and seven commercial banana triploids was analyzed using DNA molecular markers. Five IRAP (Inter-Retrotransposon Amplified Polymorphism, 7 ISSR (Inter-Simple Sequence Repeats) and 12 SSR (Simple Sequence Repeat) markers were used. The genetic dissimilarity matrix was based on the Jaccard dissimilarity index; clusters were separated using the UPGMA (Unweighted Pair Group Method With Arithmetic Mean) method and cophenetic correlation of 0.8755. This study of the genetic diversity between improved diploids and commercial triploids, based on the genetic dissimilarity matrix, revealed that the most dissimilar diploids were DM23 and DM15 (74%) and DM16 and DM15 (74%). The smallest genetic distances between the improved diploids and commercial triploids were between TCGN25 and DM17 (50%) and TCN26 and DM17 (50%). The genetic distance matrix also revealed important genotypes to be used in crosses in order to maintain good characteristics in commercial triploids when crossed with improved diploids. The results of our study provide better breeding strategies for one of the largest banana-breeding programs worldwide focused on the development of banana varieties resistant to main biotic and abiotic factors. Full article
(This article belongs to the Section Molecular Plant Sciences)
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