Search Results (6)

Biogas upgrading via biomethanation has been extensively studied recently, but the influence of organic loading rate on process performance remains to be fully understood. This is particularly significant because both organic loading rate and hydrogen injection can lead to volatile fatty acid accumulation during anaerobic digestion. This study investigated the impact of a wide range of organic loading rates (from 1.25 to 3.25 g VS/L/d) on hydrogen consumption rates, organic acid accumulation, and microbial communities during in situ biomethanation. It also provided kinetics data and metabolite production data for different control reactors, including anaerobic digestion, ex situ biomethanation, and endogenous control reactors. Hydrogen was injected into parallel batch reactors using digestate from a semi-continuous lab-scale reactor subjected to increasing organic loading rates (1.25–3.25 g VS/L/d) as an inoculum. The inoculum was well adapted to each tested organic loading rate. The batch experiments were replicated following a 12 h hydrogen starvation period to assess the stability of hydrogen consumption rates. High organic loading rate values resulted in increased hydrogen consumption rates, peaking at 68 mg COD/L/h at an organic loading rate of 3.25 g VS/L/d (maximum value tested), with no significant organic acid accumulation despite the high hydrogen partial pressures. The hydrogen consumption rates were maintained after the starvation period. Furthermore, the addition of an organic substrate did not impact the hydrogen consumption rate (i.e., the in situ and ex situ rates were similar). A higher organic loading rate resulted in higher relative abundances of hydrogenotrophic methanogens (i.e., Methanospirillum sp.). This study highlights that increasing the organic loading rate can accelerate the rate of hydrogen consumption during in situ biomethanation, consequently reducing both capital and operational costs. Full article

The natural combustion of underground coal seams leads to the formation of gas, which contains molecular hydrogen and carbon monoxide. In places where hot coal gases are released to the surface, specific thermal ecosystems are formed. Here, 16S rRNA gene profiling and shotgun metagenome sequencing were employed to characterize the taxonomic diversity and genetic potential of prokaryotic communities of the near-surface ground layer near hot gas vents in an open quarry heated by a subsurface coal fire. The communities were dominated by only a few groups of spore-forming Firmicutes, namely the aerobic heterotroph Candidatus Carbobacillus altaicus, the aerobic chemolitoautotrophs Kyrpidia tusciae and Hydrogenibacillus schlegelii, and the anaerobic chemolithoautotroph Brockia lithotrophica. Genome analysis predicted that these species can obtain energy from the oxidation of hydrogen and/or carbon monoxide in coal gases. We assembled the first complete closed genome of a member of uncultured class-level division DTU015 in the phylum Firmicutes. This bacterium, ‘Candidatus Fermentithermobacillus carboniphilus’ Bu02, was predicted to be rod-shaped and capable of flagellar motility and sporulation. Genome analysis showed the absence of aerobic and anaerobic respiration and suggested chemoheterotrophic lifestyle with the ability to ferment peptides, amino acids, N-acetylglucosamine, and tricarboxylic acid cycle intermediates. Bu02 bacterium probably plays the role of a scavenger, performing the fermentation of organics formed by autotrophic Firmicutes supported by coal gases. A comparative genome analysis of the DTU015 division revealed that most of its members have a similar lifestyle. Full article

Climate change and the urgent need to reduce greenhouse gas (GHG) emission from agriculture has resulted in significant pressure on the livestock industry for advanced practices that are environmentally more sustainable. Livestock is responsible for more than 15% of anthropogenic methane (CH₄) emission via enteric fermentation and improved strategies for mitigating enteric CH₄ production therefore represents a promising target to reduce the overall GHG contribution from agriculture. Ruminal CH₄ is produced by methanogenic archaea, combining CO₂ and hydrogen (H₂). Removal of H₂ is essential, as its accumulation inhibits many biological functions that are essential for maintaining a healthy rumen ecosystem. Although several other pathways occur in the rumen, including reductive acetogenesis, propionogenesis, nitrate, and sulfate reduction, methanogenesis seems to be the dominant pathway for H₂ removal. Global warming is not the only problem associated with the release of CH₄ from ruminants, but the released GHG also represent valuable metabolic energy that is lost to the animal and that needs to be replenished via its food. Therefore, reduction of enteric CH₄ emissions will benefit not only the environment but also be an important step toward the efficient production of high-quality animal-based protein. In recent decades, several approaches, relying on a diverse set of biological and chemical compounds, have been tested for their ability to inhibit rumen methanogenesis reliably and without negative effects for the ruminant animal. Although many of these strategies initially appeared to be promising, they turned out to be less sustainable on the industrial scale and when implemented over an extended period. The development of a long-term solution most likely has been hindered by our still incomplete understanding of microbial processes that are responsible for maintaining and dictating rumen function. Since manipulation of the overall structure of the rumen microbiome is still a significant challenge targeting key intermediates of rumen methanogenesis, such as H₂, and population that are responsible for maintaining the H₂ equilibrium in the rumen could be a more immediate approach. Addition of microorganisms capable of non-methanogenic H₂ sequestration or of reducing equivalents are potential avenues to divert molecular H₂ from methanogenesis and therefore for abate enteric CH₄. However, in order to achieve the best outcome, a detailed understanding of rumen microbiology is needed. Here we discuss some of the problems and benefits associated with alternate pathways, such as reductive acetogenesis, propionogenesis, and sulfate and nitrate reduction, which would allow us to bypass H₂ production and accumulation in the rumen. Full article

(1) Background: The geothermal spring of La Crouen (New Caledonia) discharges warm (42 °C) alkaline water (pH~9) enriched in dissolved nitrogen with traces of methane, but its microbial diversity has not yet been studied. (2) Methods: Cultivation-dependent and -independent methods (e.g., Illumina sequencing and quantitative PCR based on 16S rRNA gene) were used to describe the prokaryotic diversity of this spring. (3) Results: Prokaryotes were mainly represented by Proteobacteria (57% on average), followed by Cyanobacteria, Chlorofexi, and Candidatus Gracilibacteria (GN02/BD1-5) (each > 5%). Both potential aerobes and anaerobes, as well as mesophilic and thermophilic microorganisms, were identified. Some of them had previously been detected in continental hyperalkaline springs found in serpentinizing environments (The Cedars, Samail, Voltri, and Zambales ophiolites). Gammaproteobacteria, Ca. Gracilibacteria and Thermotogae were significantly more abundant in spring water than in sediments. Potential chemolithotrophs mainly included beta- and gammaproteobacterial genera of sulfate-reducers (Ca. Desulfobacillus), methylotrophs (Methyloversatilis), sulfur-oxidizers (Thiofaba, Thiovirga), or hydrogen-oxidizers (Hydrogenophaga). Methanogens (Methanobacteriales and Methanosarcinales) were the dominant Archaea, as found in serpentinization-driven and deep subsurface ecosystems. A novel alkaliphilic hydrogenotrophic methanogen (strain CAN) belonging to the genus Methanobacterium was isolated, suggesting that hydrogenotrophic methanogenesis occurs at La Crouen. Full article

Bacterial respiration of nitrate is a natural process of nitrate reduction, which has been industrialized to treat anthropic nitrate pollution. This process, also known as “microbial denitrification”, is widely documented from the fundamental and engineering points of view for the enhancement of the removal of nitrate in wastewater. For this purpose, experiments are generally conducted with heterotrophic microbial metabolism, neutral pH and moderate nitrate concentrations (<50 mM). The present review focuses on a different approach as it aims to understand the effects of hydrogenotrophy, alkaline pH and high nitrate concentration on microbial denitrification. Hydrogen has a high energy content but its low solubility, 0.74 mM (1 atm, 30 °C), in aqueous medium limits its bioavailability, putting it at a kinetic disadvantage compared to more soluble organic compounds. For most bacteria, the optimal pH varies between 7.5 and 9.5. Outside this range, denitrification is slowed down and nitrite (NO₂⁻) accumulates. Some alkaliphilic bacteria are able to express denitrifying activity at pH levels close to 12 thanks to specific adaptation and resistance mechanisms detailed in this manuscript, and some bacterial populations support nitrate concentrations in the range of several hundred mM to 1 M. A high concentration of nitrate generally leads to an accumulation of nitrite. Nitrite accumulation can inhibit bacterial activity and may be a cause of cell death. Full article

Hydrogen is a key energy source for subsurface microbial processes, particularly in subsurface environments with limited alternative electron donors, and environments that are not well connected to the surface. In addition to consumption of hydrogen, microbial processes such as fermentation and nitrogen fixation produce hydrogen. Hydrogen is also produced by a number of abiotic processes including radiolysis, serpentinization, graphitization, and cataclasis of silicate minerals. Both biotic and abiotically generated hydrogen may become available for consumption by microorganisms, but biotic production and consumption are usually tightly coupled. Understanding the microbiology of hydrogen cycling is relevant to subsurface engineered environments where hydrogen-cycling microorganisms are implicated in gas consumption and production and corrosion in a number of industries including carbon capture and storage, energy gas storage, and radioactive waste disposal. The same hydrogen-cycling microorganisms and processes are important in natural sites with elevated hydrogen and can provide insights into early life on Earth and life on other planets. This review draws together what is known about microbiology in natural environments with elevated hydrogen, and highlights where similar microbial populations could be of relevance to subsurface industry. Full article