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Keywords = halophilic rhizobacteria

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18 pages, 2852 KiB  
Article
Halophilic Plant Growth-Promoting Rhizobacteria as Producers of Antifungal Metabolites under Salt Stress
by Karima Ould Ouali, Karim Houali, Cristina Cruz, Juliana Melo, Yasmina Benakli, Lila Ousmer, Zahia Madani and El-Hafid Nabti
Agronomy 2024, 14(4), 845; https://doi.org/10.3390/agronomy14040845 - 18 Apr 2024
Cited by 8 | Viewed by 2280
Abstract
Salinity is one of the main factors causing soil deterioration, making it unsuitable for agriculture. It is well documented that the application of halotolerant and halophilic plant growth-promoting bacteria (PGPR: plant growth-promoting rhizobacteria) with biological control activities as an inoculant of cultivated plants [...] Read more.
Salinity is one of the main factors causing soil deterioration, making it unsuitable for agriculture. It is well documented that the application of halotolerant and halophilic plant growth-promoting bacteria (PGPR: plant growth-promoting rhizobacteria) with biological control activities as an inoculant of cultivated plants offers a biological alternative to the use of agrochemicals, particularly when subjected to salt stress. From this perspective, 70 bacterial strains were isolated from saline soils (sebkha) in arid and semi-arid areas of Eastern Algeria. Three isolates were selected based on their ability to produce bioactive molecules allowing them to promote plant growth, such as hydrolytic enzymes, indole acetic acid (auxin-phytohormone), HCN, NH3, etc. Two of these isolates belonged to the genus Serratia and the third was a halophilic Halomonas bacteria. These bacteria were identified based on their 16S rDNA sequences. Antagonism tests against phytopathogenic fungi were carried out. The identification of the antifungal molecules produced by these bacteria was determined using high-performance liquid chromatography. These bacteria can inhibit mycelial development against phytopathogenic fungi with rates reaching 80.67% against Botrytis cinerea, 76.22% against Aspergillus niger, and 66.67% against Fusarium culmorum for Serratia sp. The strain Halomonas sp. inhibited mycelial growth through the production of volatile substances of Aspergillus niger at 71.29%, Aspergillus flavus at 75.49%, and Penicillium glabrum at a rate of 72.22%. The identification of the antifungal molecules produced by these three bacteria using HPLC revealed that they were polyphenols, which makes these strains the first rhizobacteria capable of producing phenolic compounds. Finally, pot tests to determine the effectiveness of these strains in promoting wheat growth under salinity stress (125 mM, 150 mM, and 200 mM) was carried out. The results revealed that a consortium of two isolates (Serratia sp. and Halomonas sp.) performed best at 125 mM. However, at higher concentrations, it was the halophilic bacteria Halomonas sp. that gave the best result. In all cases, there was a significant improvement in the growth of wheat seedlings inoculated with the bacteria compared to non-inoculated controls. Full article
(This article belongs to the Section Soil and Plant Nutrition)
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13 pages, 9703 KiB  
Article
Exploring the Potential of Four Novel Halotolerant Bacterial Strains as Plant-Growth-Promoting Rhizobacteria (PGPR) under Saline Conditions
by Gianmaria Oliva, Luca Di Stasio, Giovanni Vigliotta, Francesco Guarino, Angela Cicatelli and Stefano Castiglione
Appl. Sci. 2023, 13(7), 4320; https://doi.org/10.3390/app13074320 - 29 Mar 2023
Cited by 11 | Viewed by 2988
Abstract
Soil salinity, due to natural phenomena or human activities, alters the water potential, which in turn affects plant growth, negatively influencing their nutrient and water uptake. Plant-growth-promoting rhizobacteria (PGPR) can be used to counteract these negative effects, especially in glycophytes. The aim of [...] Read more.
Soil salinity, due to natural phenomena or human activities, alters the water potential, which in turn affects plant growth, negatively influencing their nutrient and water uptake. Plant-growth-promoting rhizobacteria (PGPR) can be used to counteract these negative effects, especially in glycophytes. The aim of our study was to characterize physiologically, genetically, and biochemically the novel halotolerant/halophilic bacteria isolated in our previous work. We evaluated the plant-growth-promoting (PGP) features and NaCl regulation’s roles in them. In this regard, analysis based on 16S rDNA sequences confirmed that our isolates are distinct bacterial strains, probably belonging to new species, which we named Bacillus sp. M21 and M23 and Halomonas sp. QH23 and QH24. In literature, it is known that many species of Halomonas and Bacillus genera produce factors regulating plant development, such as indole-3-acetic acid (IAA), ammonium, and siderophores; and their efficiency in promoting plant growth and productivity was also demonstrated in vivo. We demonstrated that the newly isolated strains exhibit different PGP activities, highlighting how the latter are regulated by NaCl and in a strain-dependent manner. In particular, the main results showed that NaCl negatively affects the production of IAA in QH23, M21 and M23, whereas it promotes it in QH24, where it is strictly salt-dependent. Both Halomonas strains produce ammonium only in the presence of NaCl, directly correlated to its concentration. The opposite occurs in Bacillus strains, where salt reduces its production up to ten times. Overall, the results underline how halotolerance is a preferable, but not sufficient, condition for considering a PGPR potentially useful in applications aimed at improving the tolerance and productivity of crops in saline soils. Full article
(This article belongs to the Special Issue Plant–Microorganism Interactions in Response to Salinized Soils)
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22 pages, 5413 KiB  
Article
Salt Tolerant Bacillus Strains Improve Plant Growth Traits and Regulation of Phytohormones in Wheat under Salinity Stress
by Muhammad Ayaz, Qurban Ali, Qifan Jiang, Ruoyi Wang, Zhengqi Wang, Guangyuan Mu, Sabaz Ali Khan, Abdur Rashid Khan, Hakim Manghwar, Huijun Wu, Xuewen Gao and Qin Gu
Plants 2022, 11(20), 2769; https://doi.org/10.3390/plants11202769 - 19 Oct 2022
Cited by 49 | Viewed by 5559
Abstract
Soil salinity is a major constraint adversely affecting agricultural crops including wheat worldwide. The use of plant growth promoting rhizobacteria (PGPR) to alleviate salt stress in crops has attracted the focus of many researchers due to its safe and eco-friendly nature. The current [...] Read more.
Soil salinity is a major constraint adversely affecting agricultural crops including wheat worldwide. The use of plant growth promoting rhizobacteria (PGPR) to alleviate salt stress in crops has attracted the focus of many researchers due to its safe and eco-friendly nature. The current study aimed to study the genetic potential of high halophilic Bacillus strains, isolated from the rhizosphere in the extreme environment of the Qinghai–Tibetan plateau region of China, to reduce salt stress in wheat plants. The genetic analysis of high halophilic strains, NMCN1, LLCG23, and moderate halophilic stain, FZB42, revealed their key genetic features that play an important role in salt stress, osmotic regulation, signal transduction and membrane transport. Consequently, the expression of predicted salt stress-related genes were upregulated in the halophilic strains upon NaCl treatments 10, 16 and 18%, as compared with control. The halophilic strains also induced a stress response in wheat plants through the regulation of lipid peroxidation, abscisic acid and proline in a very efficient manner. Furthermore, NMCN1 and LLCG23 significantly enhanced wheat growth parameters in terms of physiological traits, i.e., fresh weight 31.2% and 29.7%, dry weight 28.6% and 27.3%, shoot length 34.2% and 31.3% and root length 32.4% and 30.2%, respectively, as compared to control plants under high NaCl concentration (200 mmol). The Bacillus strains NMCN1 and LLCG23 efficiently modulated phytohormones, leading to the substantial enhancement of plant tolerance towards salt stress. Therefore, we concluded that NMCN1 and LLCG23 contain a plethora of genetic features enabling them to combat with salt stress, which could be widely used in different bio-formulations to obtain high crop production in saline conditions. Full article
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24 pages, 2809 KiB  
Review
Microbial Diversity and Adaptation under Salt-Affected Soils: A Review
by Chiranjeev Kumawat, Ajay Kumar, Jagdish Parshad, Shyam Sunder Sharma, Abhik Patra, Prerna Dogra, Govind Kumar Yadav, Sunil Kumar Dadhich, Rajhans Verma and Girdhari Lal Kumawat
Sustainability 2022, 14(15), 9280; https://doi.org/10.3390/su14159280 - 28 Jul 2022
Cited by 53 | Viewed by 9281
Abstract
The salinization of soil is responsible for the reduction in the growth and development of plants. As the global population increases day by day, there is a decrease in the cultivation of farmland due to the salinization of soil, which threatens food security. [...] Read more.
The salinization of soil is responsible for the reduction in the growth and development of plants. As the global population increases day by day, there is a decrease in the cultivation of farmland due to the salinization of soil, which threatens food security. Salt-affected soils occur all over the world, especially in arid and semi-arid regions. The total area of global salt-affected soil is 1 billion ha, and in India, an area of nearly 6.74 million ha−1 is salt-stressed, out of which 2.95 million ha−1 are saline soil (including coastal) and 3.78 million ha−1 are alkali soil. The rectification and management of salt-stressed soils require specific approaches for sustainable crop production. Remediating salt-affected soil by chemical, physical and biological methods with available resources is recommended for agricultural purposes. Bioremediation is an eco-friendly approach compared to chemical and physical methods. The role of microorganisms has been documented by many workers for the bioremediation of such problematic soils. Halophilic Bacteria, Arbuscular mycorrhizal fungi, Cyanobacteria, plant growth-promoting rhizobacteria and microbial inoculation have been found to be effective for plant growth promotion under salt-stress conditions. The microbial mediated approaches can be adopted for the mitigation of salt-affected soil and help increase crop productivity. A microbial product consisting of beneficial halophiles maintains and enhances the soil health and the yield of the crop in salt-affected soil. This review will focus on the remediation of salt-affected soil by using microorganisms and their mechanisms in the soil and interaction with the plants. Full article
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22 pages, 6400 KiB  
Article
Bacterial Community Structure and Potential Microbial Coexistence Mechanism Associated with Three Halophytes Adapting to the Extremely Hypersaline Environment
by Lei Gao, Yin Huang, Yonghong Liu, Osama Abdalla Abdelshafy Mohamed, Xiaorong Fan, Lei Wang, Li Li and Jinbiao Ma
Microorganisms 2022, 10(6), 1124; https://doi.org/10.3390/microorganisms10061124 - 30 May 2022
Cited by 23 | Viewed by 4003
Abstract
Halophytes play a crucial ecological role in drought and saline–alkali environments. However, there is limited knowledge about the structure of bacterial communities and the potential microbial coexistence mechanism associated with halophytes. This study investigated the diversity and community structure of endophytic and rhizospheric [...] Read more.
Halophytes play a crucial ecological role in drought and saline–alkali environments. However, there is limited knowledge about the structure of bacterial communities and the potential microbial coexistence mechanism associated with halophytes. This study investigated the diversity and community structure of endophytic and rhizospheric bacteria associated with three halophytes by applying high-throughput sequencing and geochemistry analyses on the studied soils. We collected 18 plant and 21 soil samples, and sequenced the V3 and V4 hypervariable regions of the 16S rRNA gene using next-generation sequencing (NGS). We also assessed geochemistry of the studied soils. The research suggested that rhizospheric bacterial richness and diversity associated with three halophytes were all significantly higher than for endophytic bacteria. The microbial community analysis indicated that Actinobacteria, Firmicutes, Bacteroidetes and Proteobacteria were the dominating bacterial phyla. Most unassigned operational taxonomic units (OTUs) implied that the microbes associated with halophytes contained abundant potential novel taxa, which are significant microbial resources. The high-abundance OTU phylogenetic tree supported the above views as well. Additionally, network analysis indicated that some conditional rare taxa (CRT) also might be keystone taxa during halophyte microbial community construction. The results of non-metric multidimensional scaling (NMDS) ordination analysis indicated significant dissimilarities in the microbial community among different sample groups. Sixty-two biomarkers were detected from seven different sample groups by linear discriminant analysis effect size (LEFSe) analysis. Microbial functions predicted based on phylogenetic investigation of communities by reconstruction of unobserved states (PICRUSt2) demonstrated that the abundances of nitrogen metabolism genes of endophytic bacteria were significantly higher than in rhizobacteria. Environmental factor analysis confirmed that different soil properties have different degrees of influence on the abundance and composition of the microbiota. To better adapt to the extreme hypersaline environment, halophytes could specifically recruit some plant beneficial bacterial taxa, such as nitrogen-fixing bacteria and extremely halophilic or halotolerant bacteria, to help them robustly grow and proliferate. All our preliminary results highlight microbial diversity and community related to halophytes grown on saline–alkali land of arid areas. Simultaneously, this work also advanced our further understanding of the halophyte microbiome associated with plants, and their role in plant adaptation to the extremely hypersaline environment. Full article
(This article belongs to the Section Environmental Microbiology)
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13 pages, 2348 KiB  
Article
Consortia of Plant-Growth-Promoting Rhizobacteria Isolated from Halophytes Improve the Response of Swiss Chard to Soil Salinization
by Susana Redondo-Gómez, Elena Romano-Rodríguez, Jennifer Mesa-Marín, Cristina Sola-Elías and Enrique Mateos-Naranjo
Agronomy 2022, 12(2), 468; https://doi.org/10.3390/agronomy12020468 - 13 Feb 2022
Cited by 20 | Viewed by 4068
Abstract
Inadequate fertilization or the indiscriminate use of water with high salt concentrations have led to salinization of agricultural soils. In this context, biofertilization with plant-growth-promoting rhizobacteria (PGPR) is an environmentally benign strategy to stimulate plant growth, even under salt stress. Thus, we studied [...] Read more.
Inadequate fertilization or the indiscriminate use of water with high salt concentrations have led to salinization of agricultural soils. In this context, biofertilization with plant-growth-promoting rhizobacteria (PGPR) is an environmentally benign strategy to stimulate plant growth, even under salt stress. Thus, we studied the use of isolated PGPR consortia from halophytes to enhance Swiss chard growth under saline conditions. Growth, photosynthetic apparatus response, nutrient status, pigment concentrations, and secondary metabolites with antioxidant activity were determined in Swiss chard plants grown at 0 and 85 mmol L−1 NaCl. In general, inoculation of plants with PGPR has been shown to be an effective strategy to stimulate the growth of Swiss chard and improve its tolerance to salt stress. Inoculated plants watered with 85 mmol L−1 NaCl showed higher values of leaf dry weight than control plants. Furthermore, PGPR inoculation reduced electrolyte leakage and Na+ uptake and improved chlorophyll a fluorescence parameters, chlorophyll and carotenoid concentrations, stomatal conductance, and antioxidant capacity of Swiss chard. Finally, our findings highlight the potential of isolated PGPR from halophytes to counterbalance the deleterious effect of salinity and stimulate crop growth. Full article
(This article belongs to the Special Issue How Could Microorganisms Benefit the Agriculture Environment?)
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14 pages, 1870 KiB  
Article
Consortia of Plant-Growth-Promoting Rhizobacteria Isolated from Halophytes Improve Response of Eight Crops to Soil Salinization and Climate Change Conditions
by Susana Redondo-Gómez, Jennifer Mesa-Marín, Jesús A. Pérez-Romero, Javier López-Jurado, Jesús V. García-López, Vicente Mariscal, Fernando P. Molina-Heredia, Eloisa Pajuelo, Ignacio D. Rodríguez-Llorente, Timothy J. Flowers and Enrique Mateos-Naranjo
Agronomy 2021, 11(8), 1609; https://doi.org/10.3390/agronomy11081609 - 13 Aug 2021
Cited by 41 | Viewed by 5293
Abstract
Soil salinization is an environmental problem that adversely affects plant growth and crop productivity worldwide. As an alternative to the conventional approach of breeding salt-tolerant plant cultivars, we explored the use of plant-growth-promoting rhizobacteria (PGPR) from halophytic plants to enhance crop growth under [...] Read more.
Soil salinization is an environmental problem that adversely affects plant growth and crop productivity worldwide. As an alternative to the conventional approach of breeding salt-tolerant plant cultivars, we explored the use of plant-growth-promoting rhizobacteria (PGPR) from halophytic plants to enhance crop growth under saline conditions. Here, we report the effect of five PGPR consortia from halophytes on the growth of eight (alfalfa, flax, maize, millet, rice, strawberry, sunflower, and wheat) of the crops most commonly produced on salinized soils worldwide. To test the efficiency of halotolerant consortia, we designed a complex environmental matrix simulating future climate-change scenarios, including increased CO2 levels and temperature. Overall, biofertilizers enhanced growth of most crops with respect to non-inoculated control plants under different CO2 concentrations (400/700 ppm), temperatures (25/+4 °C), and salinity conditions (0 and 85 mM NaCl). Biofertilizers counteracted the detrimental effect of salinity on crop growth. Specifically, strawberry and rice showed the greatest positive additive response to inoculation in the presence of salt; above-ground biomasses were 35% and 3% greater, respectively, than their respective control grown without salt. Furthermore, depending on the interaction of environmental factors (salinity × CO2 × temperature) analyzed, the results varied—influencing the most effective biofertilizer determined for each crop now, or in the future. Our findings highlight the importance of conducting studies that consider stress interaction for realistic assessments of the potential of biofertilizers in a climate-changed world. Full article
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16 pages, 1268 KiB  
Article
Inoculation of Klebsiella variicola Alleviated Salt Stress and Improved Growth and Nutrients in Wheat and Maize
by Supriya P. Kusale, Yasmin C. Attar, R. Z. Sayyed, Hesham El Enshasy, Siti Zulaiha Hanapi, Noshin Ilyas, Abdallah M. Elgorban, Ali H. Bahkali and Najat Marraiki
Agronomy 2021, 11(5), 927; https://doi.org/10.3390/agronomy11050927 - 8 May 2021
Cited by 73 | Viewed by 5873
Abstract
Although wheat and maize are the major economically important cereal crops and staple food sources in the world, their productivity is highly affected by excess salts in soil (salinity). Applications of multifarious halophilic plant growth-promoting rhizobacteria (PGPR) in saline soil protect the plants [...] Read more.
Although wheat and maize are the major economically important cereal crops and staple food sources in the world, their productivity is highly affected by excess salts in soil (salinity). Applications of multifarious halophilic plant growth-promoting rhizobacteria (PGPR) in saline soil protect the plants from osmotic damages and promote plant growth through the secretion of plant growth promoting (PGP) and osmolytes. In this study, Klebsiella variicola SURYA6—a PGPR—was evaluated for plant-growth-promotion and salinity amelioration in wheat and maize, and enrichment of soil nutrients. The results of the present study revealed that K. variicola SURYA6 grows luxuriously under high salinity stress conditions and produces copious amounts of three principal salinity ameliorating traits, such as 1 aminocyclopropane-1-carboxylate deaminase (ACCD), indole-3-acetic acid (IAA), exopolysaccharides (EPS), and osmolytes—such as proline, sugars, proteins, and amino acids. The isolate also exhibited sensitivity to a wide range of antibiotics, lack of hemolytic ability, and absence of catalase and oxidase activities confirming its nonpathogenic nature. Inoculation of wheat and maize seeds with this multifarious strain, improved the physicochemical properties of soil, improved seed germination by 33.9% and 36.0%, root length by 111.0%, 35.1%, shoot height by 64.8% and 78.9%, and chlorophyll content by 68.4% and 66.7% in wheat and maize seedlings, respectively, at 45 days after sowing (DAS) under salinity stress. The improvement in plant growth can be correlated with the secretion of PGP traits and improved, uptake of minerals such as nitrogen (N), phosphorus (P), sodium (Na), potassium (K), and magnesium (Mg). While amelioration of salinity can be the result of secretion of osmolytes and the change in pH from salinity to neutrality. This inoculation also significantly improved the soil nutrients under salinity stress conditions. Inoculation of K. variicola SURYA6, resulted in more improved growth and nutrients contents in plants and enriched soil nutrients under salinity stress as compared to normal (non-saline) conditions. Such multifarious strain can serve as a potent bio-inoculant for growth promotion of wheat and maize in saline soil. However, multi-year field trials under different agro-climatic conditions are required to confirm the bio-efficacy of K. variicola SURYA6. Full article
(This article belongs to the Special Issue Use of Bio-Fertilizers to Improve Crop Quality and Yield)
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12 pages, 854 KiB  
Review
Analysis of Gene Expression Changes in Plants Grown in Salty Soil in Response to Inoculation with Halophilic Bacteria
by Ashley K. Miller and Brent L. Nielsen
Int. J. Mol. Sci. 2021, 22(7), 3611; https://doi.org/10.3390/ijms22073611 - 31 Mar 2021
Cited by 12 | Viewed by 5652
Abstract
Soil salinity is an increasing problem facing agriculture in many parts of the world. Climate change and irrigation practices have led to decreased yields of some farmland due to increased salt levels in the soil. Plants that have tolerance to salt are thus [...] Read more.
Soil salinity is an increasing problem facing agriculture in many parts of the world. Climate change and irrigation practices have led to decreased yields of some farmland due to increased salt levels in the soil. Plants that have tolerance to salt are thus needed to feed the world’s population. One approach addressing this problem is genetic engineering to introduce genes encoding salinity, but this approach has limitations. Another fairly new approach is the isolation and development of salt-tolerant (halophilic) plant-associated bacteria. These bacteria are used as inoculants to stimulate plant growth. Several reports are now available, demonstrating how the use of halophilic inoculants enhance plant growth in salty soil. However, the mechanisms for this growth stimulation are as yet not clear. Enhanced growth in response to bacterial inoculation is expected to be associated with changes in plant gene expression. In this review, we discuss the current literature and approaches for analyzing altered plant gene expression in response to inoculation with halophilic bacteria. Additionally, challenges and limitations to current approaches are analyzed. A further understanding of the molecular mechanisms involved in enhanced plant growth when inoculated with salt-tolerant bacteria will significantly improve agriculture in areas affected by saline soils. Full article
(This article belongs to the Special Issue Molecular Aspects of Plant Salinity Stress and Tolerance)
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17 pages, 4253 KiB  
Article
Silencing of Phytopathogen Communication by the Halotolerant PGPR Staphylococcus Equorum Strain EN21
by Clara Vega, Miguel Rodríguez, Inmaculada Llamas, Victoria Béjar and Inmaculada Sampedro
Microorganisms 2020, 8(1), 42; https://doi.org/10.3390/microorganisms8010042 - 24 Dec 2019
Cited by 28 | Viewed by 5383
Abstract
Increasing world food demand together with soil erosion and indiscriminate use of chemical fertilization highlight the need to adopt sustainable crop production strategies. In this context, a combination of plant growth-promoting rhizobacteria (PGPR) and pathogen management represents a sustainable and efficient alternative. Though [...] Read more.
Increasing world food demand together with soil erosion and indiscriminate use of chemical fertilization highlight the need to adopt sustainable crop production strategies. In this context, a combination of plant growth-promoting rhizobacteria (PGPR) and pathogen management represents a sustainable and efficient alternative. Though little studied, halophilic and halotolerant PGPR could be a beneficial plant growth promotion strategy for saline and non-saline soils. The virulence of many bacterial phytopathogens is regulated by quorum sensing (QS) systems. Quorum quenching (QQ) involves the enzymatic degradation of phytopathogen-generated signal molecules, mainly N-acyl homoserine lactones (AHLs). In this study, we investigate plant growth-promoting (PGP) activity and the capacity of the halotolerant bacterium Staphylococcus equorum strain EN21 to attenuate phytopathogens virulence through QQ. We used biopriming and in vivo tomato plant experiments to analyse the PGP activity of strain EN21. AHL inactivation was observed to reduce Pseudomonas syringae pv. tomato infections in tomato and Arabidopsis plants. Our study of Dickeya solani, Pectobacterium carotovorum subsp. carotovorum and Erwinia amylovora bacteria in potato tubers, carrots and pears, respectively, also demonstrated the effectiveness of QS interruption by EN21. Overall, this study highlights the potential of strain S. equorum EN21 in plant growth promotion and QQ-driven bacterial phytopathogen biocontrol. Full article
(This article belongs to the Special Issue Extremophiles 2.0)
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