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12 pages, 1543 KB  
Article
Surface Behaviours of Humpback Whale Megaptera novaeangliae at Nosy Be (Madagascar)
by Ylenia Fabietti, Chiara Spadaro, Agnese Tigani, Gianni Giglio, Gianpiero Barbuto, Viviana Romano, Giorgio Fedele, Francesco Luigi Leonetti, Emanuele Venanzi, Carlotta Barba and Emilio Sperone
Biology 2024, 13(12), 996; https://doi.org/10.3390/biology13120996 - 29 Nov 2024
Viewed by 1957
Abstract
The surface behaviours of humpback whales were studied in the presence of a whale-watching vessel at Nosy Be (Madagascar) during whale-watching activities, in order to characterise the ethogram of these animals. Data were collected from July to October 2018. Of the 75 total [...] Read more.
The surface behaviours of humpback whales were studied in the presence of a whale-watching vessel at Nosy Be (Madagascar) during whale-watching activities, in order to characterise the ethogram of these animals. Data were collected from July to October 2018. Of the 75 total trips, humpback whales were observed 68 times and different types of aggregations were observed: Groups (33.82%), Mother–calf pairs (30.88%), Singles (27.94%), and Mother–calf and Escorts (7.35%). Individuals exhibited the following behaviours: Spouting, Breaching, Head Slap, Tail Throw, Tail Slap, Peck Slap, Spy-hopping, and Logging. Sighting data were evaluated by comparing the observed aggregations with reported behaviours, and vice versa. Among the most commonly observed behaviours, Spouting and Peck Slap were exhibited more in Groups, while Breaching was exhibited by all of the associations, with the exception of Singles. In Groups of more than two individuals, little or no social nor aggressive behaviours were observed, probably due to a lack of needing to attract the attention of other individuals. This suggests that, during the breeding season, Nosy Be could represent a wintering and weaning ground for calves. Full article
(This article belongs to the Section Marine Biology)
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13 pages, 1946 KB  
Article
A Multi-Input Machine Learning Approach to Classifying Sex Trafficking from Online Escort Advertisements
by Lucia Summers, Alyssa N. Shallenberger, John Cruz and Lawrence V. Fulton
Mach. Learn. Knowl. Extr. 2023, 5(2), 460-472; https://doi.org/10.3390/make5020028 - 10 May 2023
Cited by 6 | Viewed by 4440
Abstract
Sex trafficking victims are often advertised through online escort sites. These ads can be publicly accessed, but law enforcement lacks the resources to comb through hundreds of ads to identify those that may feature sex-trafficked individuals. The purpose of this study was to [...] Read more.
Sex trafficking victims are often advertised through online escort sites. These ads can be publicly accessed, but law enforcement lacks the resources to comb through hundreds of ads to identify those that may feature sex-trafficked individuals. The purpose of this study was to implement and test multi-input, deep learning (DL) binary classification models to predict the probability of an online escort ad being associated with sex trafficking (ST) activity and aid in the detection and investigation of ST. Data from 12,350 scraped and classified ads were split into training and test sets (80% and 20%, respectively). Multi-input models that included recurrent neural networks (RNN) for text classification, convolutional neural networks (CNN, specifically EfficientNetB6 or ENET) for image/emoji classification, and neural networks (NN) for feature classification were trained and used to classify the 20% test set. The best-performing DL model included text and imagery inputs, resulting in an accuracy of 0.82 and an F1 score of 0.70. More importantly, the best classifier (RNN + ENET) correctly identified 14 of 14 sites that had classification probability estimates of 0.845 or greater (1.0 precision); precision was 96% for the multi-input model (NN + RNN + ENET) when only the ads associated with the highest positive classification probabilities (>0.90) were considered (n = 202 ads). The models developed could be productionalized and piloted with criminal investigators, as they could potentially increase their efficiency in identifying potential ST victims. Full article
(This article belongs to the Special Issue Deep Learning Methods for Natural Language Processing)
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12 pages, 332 KB  
Article
Extended Divergence on a Foliation by Deformed Probability Simplexes
by Keiko Uohashi
Entropy 2022, 24(12), 1736; https://doi.org/10.3390/e24121736 - 28 Nov 2022
Cited by 1 | Viewed by 1626
Abstract
This study considers a new decomposition of an extended divergence on a foliation by deformed probability simplexes from the information geometry perspective. In particular, we treat the case where each deformed probability simplex corresponds to a set of q-escort distributions. For the [...] Read more.
This study considers a new decomposition of an extended divergence on a foliation by deformed probability simplexes from the information geometry perspective. In particular, we treat the case where each deformed probability simplex corresponds to a set of q-escort distributions. For the foliation, different q-parameters and the corresponding α-parameters of dualistic structures are defined on each of the various leaves. We propose the divergence decomposition theorem that guides the proximity of q-escort distributions with different q-parameters and compare the new theorem to the previous theorem of the standard divergence on a Hessian manifold with a fixed α-parameter. Full article
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16 pages, 457 KB  
Article
A Proposed Interpretation of the Wave–Particle Duality
by Kurt Jung
Entropy 2022, 24(11), 1535; https://doi.org/10.3390/e24111535 - 26 Oct 2022
Cited by 2 | Viewed by 3586
Abstract
Within the framework of quantum mechanics, the wave function squared describes the probability density of particles. In this article, another description of the wave function is given which embeds quantum mechanics into the traditional fields of physics, thus making new interpretations dispensable. The [...] Read more.
Within the framework of quantum mechanics, the wave function squared describes the probability density of particles. In this article, another description of the wave function is given which embeds quantum mechanics into the traditional fields of physics, thus making new interpretations dispensable. The new concept is based on the idea that each microscopic particle with non-vanishing rest mass is accompanied by a matter wave, which is formed by adjusting the phases of the vacuum fluctuations in the vicinity of the vibrating particle. The vibrations of the particle and wave are phase-coupled. Particles move on continuous approximately classical trajectories. By the phase coupling mechanism, the particle transfers the information on its kinematics and thus also on the external potential to the wave. The space dependence of the escorting wave turns out to be equal to the wave function. The new concept fundamentally differs from the pilot wave concept of Bohmian mechanics. Full article
(This article belongs to the Special Issue Completeness of Quantum Theory: Still an Open Question)
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22 pages, 27809 KB  
Article
Exploring New Functional Aspects of HTLV-1 RNA-Binding Protein Rex: How Does Rex Control Viral Replication?
by Kazumi Nakano, Koichi Yokoyama, Shuichi Shin, Koki Uchida, Kazuki Tsuji, Marie Tanaka, Kaoru Uchimaru and Toshiki Watanabe
Viruses 2022, 14(2), 407; https://doi.org/10.3390/v14020407 - 16 Feb 2022
Cited by 5 | Viewed by 3582
Abstract
After integration to the human genome as a provirus, human T-cell leukemia virus type 1 (HTLV-1) utilizes host T cell gene expression machinery for viral replication. The viral RNA-binding protein, Rex, is known to transport unspliced/incompletely spliced viral mRNAs encoding viral structural proteins [...] Read more.
After integration to the human genome as a provirus, human T-cell leukemia virus type 1 (HTLV-1) utilizes host T cell gene expression machinery for viral replication. The viral RNA-binding protein, Rex, is known to transport unspliced/incompletely spliced viral mRNAs encoding viral structural proteins out of the nucleus to enhance virus particle formation. However, the detailed mechanism of how Rex avoids extra splicing of unspliced/incompletely spliced viral mRNAs and stabilizes them for effective translation is still unclear. To elucidate the underlying molecular mechanism of Rex function, we comprehensively analyzed the changes in gene expression and splicing patterns in Rex-overexpressing T cells. In addition, we identified 81 human proteins interacting with Rex, involved in transcription, splicing, translation, and mRNA quality control. In particular, Rex interacts with NONO and SFPQ, which play important roles in the regulation of transcription and splicing. Accordingly, expression profiles and splicing patterns of a wide variety of genes are significantly changed in Rex-expressing T cells. Especially, the level of vPD-L1 mRNA that lacks the part of exon 4, thus encodes soluble PD-L1 was significantly increased in Rex-expressing cells. Overall, by integrated analysis of these three datasets, we showed for the first time that Rex intervenes the host gene expression machinery throughout the pathway, probably to escort viral unstable mRNAs from transcription (start) to translation (end). Upon exerting its function, Rex may alter the expression level and splicing patterns of various genes, thus influencing the phenotype of the host cell. Full article
(This article belongs to the Special Issue Host Cell-Virus Interaction)
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12 pages, 271 KB  
Article
Alternative Entropy Measures and Generalized Khinchin–Shannon Inequalities
by Rubem P. Mondaini and Simão C. de Albuquerque Neto
Entropy 2021, 23(12), 1618; https://doi.org/10.3390/e23121618 - 1 Dec 2021
Cited by 5 | Viewed by 1823
Abstract
The Khinchin–Shannon generalized inequalities for entropy measures in Information Theory, are a paradigm which can be used to test the Synergy of the distributions of probabilities of occurrence in physical systems. The rich algebraic structure associated with the introduction of escort probabilities seems [...] Read more.
The Khinchin–Shannon generalized inequalities for entropy measures in Information Theory, are a paradigm which can be used to test the Synergy of the distributions of probabilities of occurrence in physical systems. The rich algebraic structure associated with the introduction of escort probabilities seems to be essential for deriving these inequalities for the two-parameter Sharma–Mittal set of entropy measures. We also emphasize the derivation of these inequalities for the special cases of one-parameter Havrda–Charvat’s, Rényi’s and Landsberg–Vedral’s entropy measures. Full article
(This article belongs to the Special Issue Sample Entropy: Theory and Application)
20 pages, 334 KB  
Article
Unifying Aspects of Generalized Calculus
by Marek Czachor
Entropy 2020, 22(10), 1180; https://doi.org/10.3390/e22101180 - 19 Oct 2020
Cited by 17 | Viewed by 4432
Abstract
Non-Newtonian calculus naturally unifies various ideas that have occurred over the years in the field of generalized thermostatistics, or in the borderland between classical and quantum information theory. The formalism, being very general, is as simple as the calculus we know from undergraduate [...] Read more.
Non-Newtonian calculus naturally unifies various ideas that have occurred over the years in the field of generalized thermostatistics, or in the borderland between classical and quantum information theory. The formalism, being very general, is as simple as the calculus we know from undergraduate courses of mathematics. Its theoretical potential is huge, and yet it remains unknown or unappreciated. Full article
(This article belongs to the Special Issue The Statistical Foundations of Entropy)
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15 pages, 766 KB  
Article
Nonextensive Statistical Mechanics: Equivalence Between Dual Entropy and Dual Probabilities
by George Livadiotis
Entropy 2020, 22(6), 594; https://doi.org/10.3390/e22060594 - 26 May 2020
Cited by 2 | Viewed by 3619
Abstract
The concept of duality of probability distributions constitutes a fundamental “brick” in the solid framework of nonextensive statistical mechanics—the generalization of Boltzmann–Gibbs statistical mechanics under the consideration of the q-entropy. The probability duality is solving old-standing issues of the theory, e.g., it [...] Read more.
The concept of duality of probability distributions constitutes a fundamental “brick” in the solid framework of nonextensive statistical mechanics—the generalization of Boltzmann–Gibbs statistical mechanics under the consideration of the q-entropy. The probability duality is solving old-standing issues of the theory, e.g., it ascertains the additivity for the internal energy given the additivity in the energy of microstates. However, it is a rather complex part of the theory, and certainly, it cannot be trivially explained along the Gibb’s path of entropy maximization. Recently, it was shown that an alternative picture exists, considering a dual entropy, instead of a dual probability. In particular, the framework of nonextensive statistical mechanics can be equivalently developed using q- and 1/q- entropies. The canonical probability distribution coincides again with the known q-exponential distribution, but without the necessity of the duality of ordinary-escort probabilities. Furthermore, it is shown that the dual entropies, q-entropy and 1/q-entropy, as well as, the 1-entropy, are involved in an identity, useful in theoretical development and applications. Full article
(This article belongs to the Special Issue Entropy Measures and Applications in Astrophysics)
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21 pages, 1294 KB  
Article
The Case for Shifting the Rényi Entropy
by Francisco J. Valverde-Albacete and Carmen Peláez-Moreno
Entropy 2019, 21(1), 46; https://doi.org/10.3390/e21010046 - 9 Jan 2019
Cited by 15 | Viewed by 4987
Abstract
We introduce a variant of the Rényi entropy definition that aligns it with the well-known Hölder mean: in the new formulation, the r-th order Rényi Entropy is the logarithm of the inverse of the r-th order Hölder mean. This brings about [...] Read more.
We introduce a variant of the Rényi entropy definition that aligns it with the well-known Hölder mean: in the new formulation, the r-th order Rényi Entropy is the logarithm of the inverse of the r-th order Hölder mean. This brings about new insights into the relationship of the Rényi entropy to quantities close to it, like the information potential and the partition function of statistical mechanics. We also provide expressions that allow us to calculate the Rényi entropies from the Shannon cross-entropy and the escort probabilities. Finally, we discuss why shifting the Rényi entropy is fruitful in some applications. Full article
(This article belongs to the Section Information Theory, Probability and Statistics)
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41 pages, 2461 KB  
Article
Tsallis Extended Thermodynamics Applied to 2-d Turbulence: Lévy Statistics and q-Fractional Generalized Kraichnanian Energy and Enstrophy Spectra
by Peter W. Egolf and Kolumban Hutter
Entropy 2018, 20(2), 109; https://doi.org/10.3390/e20020109 - 7 Feb 2018
Cited by 7 | Viewed by 4669
Abstract
The extended thermodynamics of Tsallis is reviewed in detail and applied to turbulence. It is based on a generalization of the exponential and logarithmic functions with a parameter q. By applying this nonequilibrium thermodynamics, the Boltzmann-Gibbs thermodynamic approach of Kraichnan to 2-d [...] Read more.
The extended thermodynamics of Tsallis is reviewed in detail and applied to turbulence. It is based on a generalization of the exponential and logarithmic functions with a parameter q. By applying this nonequilibrium thermodynamics, the Boltzmann-Gibbs thermodynamic approach of Kraichnan to 2-d turbulence is generalized. This physical modeling implies fractional calculus methods, obeying anomalous diffusion, described by Lévy statistics with q < 5/3 (sub diffusion), q = 5/3 (normal or Brownian diffusion) and q > 5/3 (super diffusion). The generalized energy spectrum of Kraichnan, occurring at small wave numbers k, now reveals the more general and precise result k−q. This corresponds well for q = 5/3 with the Kolmogorov-Oboukov energy spectrum and for q > 5/3 to turbulence with intermittency. The enstrophy spectrum, occurring at large wave numbers k, leads to a k3q power law, suggesting that large wave-number eddies are in thermodynamic equilibrium, which is characterized by q = 1, finally resulting in Kraichnan’s correct k3 enstrophy spectrum. The theory reveals in a natural manner a generalized temperature of turbulence, which in the non-equilibrium energy transfer domain decreases with wave number and shows an energy equipartition law with a constant generalized temperature in the equilibrium enstrophy transfer domain. The article contains numerous new results; some are stated in form of eight new (proven) propositions. Full article
(This article belongs to the Special Issue Phenomenological Thermodynamics of Irreversible Processes)
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31 pages, 489 KB  
Article
On Generalized Stam Inequalities and Fisher–Rényi Complexity Measures
by Steeve Zozor, David Puertas-Centeno and Jesús S. Dehesa
Entropy 2017, 19(9), 493; https://doi.org/10.3390/e19090493 - 14 Sep 2017
Cited by 14 | Viewed by 4626
Abstract
Information-theoretic inequalities play a fundamental role in numerous scientific and technological areas (e.g., estimation and communication theories, signal and information processing, quantum physics, …) as they generally express the impossibility to have a complete description of a system via a finite number of [...] Read more.
Information-theoretic inequalities play a fundamental role in numerous scientific and technological areas (e.g., estimation and communication theories, signal and information processing, quantum physics, …) as they generally express the impossibility to have a complete description of a system via a finite number of information measures. In particular, they gave rise to the design of various quantifiers (statistical complexity measures) of the internal complexity of a (quantum) system. In this paper, we introduce a three-parametric Fisher–Rényi complexity, named ( p , β , λ ) -Fisher–Rényi complexity, based on both a two-parametic extension of the Fisher information and the Rényi entropies of a probability density function ρ characteristic of the system. This complexity measure quantifies the combined balance of the spreading and the gradient contents of ρ , and has the three main properties of a statistical complexity: the invariance under translation and scaling transformations, and a universal bounding from below. The latter is proved by generalizing the Stam inequality, which lowerbounds the product of the Shannon entropy power and the Fisher information of a probability density function. An extension of this inequality was already proposed by Bercher and Lutwak, a particular case of the general one, where the three parameters are linked, allowing to determine the sharp lower bound and the associated probability density with minimal complexity. Using the notion of differential-escort deformation, we are able to determine the sharp bound of the complexity measure even when the three parameters are decoupled (in a certain range). We determine as well the distribution that saturates the inequality: the ( p , β , λ ) -Gaussian distribution, which involves an inverse incomplete beta function. Finally, the complexity measure is calculated for various quantum-mechanical states of the harmonic and hydrogenic systems, which are the two main prototypes of physical systems subject to a central potential. Full article
(This article belongs to the Special Issue Foundations of Quantum Mechanics)
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16 pages, 1195 KB  
Article
On the Simplification of Statistical Mechanics for Space Plasmas
by George Livadiotis
Entropy 2017, 19(6), 285; https://doi.org/10.3390/e19060285 - 18 Jun 2017
Cited by 14 | Viewed by 6854
Abstract
Space plasmas are frequently described by kappa distributions. Non-extensive statistical mechanics involves the maximization of the Tsallis entropic form under the constraints of canonical ensemble, considering also a dyadic formalism between the ordinary and escort probability distributions. This paper addresses the statistical origin [...] Read more.
Space plasmas are frequently described by kappa distributions. Non-extensive statistical mechanics involves the maximization of the Tsallis entropic form under the constraints of canonical ensemble, considering also a dyadic formalism between the ordinary and escort probability distributions. This paper addresses the statistical origin of kappa distributions, and shows that they can be connected with non-extensive statistical mechanics without considering the dyadic formalism of ordinary/escort distributions. While this concept does significantly simplify the usage of the theory, it costs the definition of a dyadic entropic formulation, in order to preserve the consistency between statistical mechanics and thermodynamics. Therefore, the simplification of the theory by means of avoiding dyadic formalism is impossible within the framework of non-extensive statistical mechanics. Full article
(This article belongs to the Collection Advances in Applied Statistical Mechanics)
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13 pages, 257 KB  
Article
A Sequence of Escort Distributions and Generalizations of Expectations on q-Exponential Family
by Hiroshi Matsuzoe
Entropy 2017, 19(1), 7; https://doi.org/10.3390/e19010007 - 25 Dec 2016
Cited by 14 | Viewed by 5505
Abstract
In the theory of complex systems, long tailed probability distributions are often discussed. For such a probability distribution, a deformed expectation with respect to an escort distribution is more useful than the standard expectation. In this paper, by generalizing such escort distributions, a [...] Read more.
In the theory of complex systems, long tailed probability distributions are often discussed. For such a probability distribution, a deformed expectation with respect to an escort distribution is more useful than the standard expectation. In this paper, by generalizing such escort distributions, a sequence of escort distributions is introduced. As a consequence, it is shown that deformed expectations with respect to sequential escort distributions effectively work for anomalous statistics. In particular, it is shown that a Fisher metric on a q-exponential family can be obtained from the escort expectation with respect to the second escort distribution, and a cubic form (or an Amari–Chentsov tensor field, equivalently) is obtained from the escort expectation with respect to the third escort distribution. Full article
(This article belongs to the Special Issue Differential Geometrical Theory of Statistics)
16 pages, 157 KB  
Article
Geometry of q-Exponential Family of Probability Distributions
by Shun-ichi Amari and Atsumi Ohara
Entropy 2011, 13(6), 1170-1185; https://doi.org/10.3390/e13061170 - 14 Jun 2011
Cited by 72 | Viewed by 13263
Abstract
The Gibbs distribution of statistical physics is an exponential family of probability distributions, which has a mathematical basis of duality in the form of the Legendre transformation. Recent studies of complex systems have found lots of distributions obeying the power law rather than [...] Read more.
The Gibbs distribution of statistical physics is an exponential family of probability distributions, which has a mathematical basis of duality in the form of the Legendre transformation. Recent studies of complex systems have found lots of distributions obeying the power law rather than the standard Gibbs type distributions. The Tsallis q-entropy is a typical example capturing such phenomena. We treat the q-Gibbs distribution or the q-exponential family by generalizing the exponential function to the q-family of power functions, which is useful for studying various complex or non-standard physical phenomena. We give a new mathematical structure to the q-exponential family different from those previously given. It has a dually flat geometrical structure derived from the Legendre transformation and the conformal geometry is useful for understanding it. The q-version of the maximum entropy theorem is naturally induced from the q-Pythagorean theorem. We also show that the maximizer of the q-escort distribution is a Bayesian MAP (Maximum A posteriori Probability) estimator. Full article
(This article belongs to the Special Issue Distance in Information and Statistical Physics Volume 2)
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7 pages, 86 KB  
Article
Tsallis Entropy, Escort Probability and the Incomplete Information Theory
by Amir Hossein Darooneh, Ghassem Naeimi, Ali Mehri and Parvin Sadeghi
Entropy 2010, 12(12), 2497-2503; https://doi.org/10.3390/e12122497 - 21 Dec 2010
Cited by 17 | Viewed by 9798
Abstract
Non-extensive statistical mechanics appears as a powerful way to describe complex systems. Tsallis entropy, the main core of this theory has been remained as an unproven assumption. Many people have tried to derive the Tsallis entropy axiomatically. Here we follow the work of [...] Read more.
Non-extensive statistical mechanics appears as a powerful way to describe complex systems. Tsallis entropy, the main core of this theory has been remained as an unproven assumption. Many people have tried to derive the Tsallis entropy axiomatically. Here we follow the work of Wang (EPJB, 2002) and use the incomplete information theory to retrieve the Tsallis entropy. We change the incomplete information axioms to consider the escort probability and obtain a correct form of Tsallis entropy in comparison with Wang’s work. Full article
(This article belongs to the Special Issue Advances in Statistical Mechanics)
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