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Keywords = endocarp coloration

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18 pages, 4618 KiB  
Article
Lipid Profiling of Four Guava Cultivars: A Multi-Dimensional Spatial Analysis
by Qun Zhang, Xueren Cao, Yujun Ding, Chen Ma, Qiong Fan, Jia Song, Yu Rong, Di Chen, Wenjiang Dong, Xiaopeng Wu, Zhi Xu and Daizhu Lyu
Foods 2025, 14(13), 2330; https://doi.org/10.3390/foods14132330 - 30 Jun 2025
Viewed by 353
Abstract
This study aimed to reveal the lipid composition and distribution and characterize the lipid metabolism profile in the three distinct parts of four guava varieties with varying textures and colors using liquid chromatography–electrospray ionization–tandem mass spectrometry. The four varieties, collected from a guava [...] Read more.
This study aimed to reveal the lipid composition and distribution and characterize the lipid metabolism profile in the three distinct parts of four guava varieties with varying textures and colors using liquid chromatography–electrospray ionization–tandem mass spectrometry. The four varieties, collected from a guava cultivation base in Danzhou City, Hainan Province, were “Zhenzhu” (white-fleshed hard-crispy guava, YBSL), “Bendi” (white-fleshed soft-waxy guava, RBSL), “Xiguahong” (red-fleshed hard-crispy guava, YHSL), and “Hongxin” (red-fleshed soft-waxy guava, RHSL). A total of 8242 lipids were detected, which were classified into four categories and 20 subcategories. Glycerolipids and glycerophospholipids are the most abundant types of lipids in guava. The lipid composition showed significant differences between hard-crispy and soft-waxy guavas. The red-fleshed guava varieties had 98, 57, and 96 differential lipid metabolites, whereas white-fleshed varieties had 68, 108, and 41 lipid metabolites in the epicarp, mesocarp, and endocarp, respectively. Moreover, comparative analysis of hard-crispy versus soft-waxy guavas with different colors revealed common differential lipids in the epicarp (29), mesocarp (21), and endocarp (18). The common differential lipids, including phosphatidylcholine (PC) (16:0/18:1), PC (18:1/18:1), and phosphatidylethanolamine (PE) (18:1/18:2), were found to be upregulated across all fruit parts, with greater abundance in soft-waxy guavas. They were mainly enriched in metabolic pathways associated with glycerophosphocholine and glycerophosphoethanolamine. These differential lipids may serve as potential biomarkers for evaluating guava quality. This study unveiled the lipid distribution and metabolic variations among different guava varieties. It also established a scientific foundation for improving guava varieties and implementing quality control measures. Full article
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24 pages, 4372 KiB  
Article
PavSPL Expression Dynamics in Fruits and Seeds and in Relation to Endocarp Lignification Status During the Transition from Development to Ripening in Sweet Cherry
by Matías Zavala, Marcela Menares, Orlando Acevedo, Mirna Melo, Carlos Nuñez, Camila Arancibia, Romina Pedreschi, José Manuel Donoso, Lee A. Meisel, Jonathan E. Maldonado and Nathalie Kuhn
Horticulturae 2025, 11(6), 706; https://doi.org/10.3390/horticulturae11060706 - 19 Jun 2025
Viewed by 522
Abstract
The transition to ripening in non-climacteric species is governed by several signals, including hormones that enhance or counteract the abscisic acid (ABA)-promoting effect. The SQUAMOSA Promoter-binding protein-Like (SPL) transcription factors are involved in ripening through the modulation of anthocyanin biosynthesis. In sweet cherry [...] Read more.
The transition to ripening in non-climacteric species is governed by several signals, including hormones that enhance or counteract the abscisic acid (ABA)-promoting effect. The SQUAMOSA Promoter-binding protein-Like (SPL) transcription factors are involved in ripening through the modulation of anthocyanin biosynthesis. In sweet cherry fruits, several miR156-targeted PavSPLs are expressed before and during ripening. Recently, some PavSPLs were found in the transition from development to ripening in cultivars contrasting in maturity time. Additionally, several forms of miR156 were expressed in sweet cherry seeds of an early-season cultivar. In this work, we addressed the relevance of endocarp lignification and PavSPLs expression for the transition to ripening. First, we characterized early- and late-season sweet cherry cultivars, ‘Celeste’ and ‘Regina’, focusing on fruit and seed development, endocarp lignification, and PavSPL expression profile. Fruit growth dynamics revealed an earlier onset of color development and lignification in ‘Celeste’, while ‘Regina’ exhibited a prolonged lag phase and delayed embryo development. Transcript profiling at the light green stage showed a higher expression of PavSPL genes in fruits and identified cultivar-specific expressions, especially between ‘Regina’ and ‘Celeste’ seeds. Co-expression networks linked PavSPLs to genes involved in lignin and anthocyanin biosynthesis. We focused on PavSPL2 and PavSPL9, which were targeted by mtr-miR156a and gma-miR156f. Both PavSPLs and miRNAs were expressed in fruits and seeds at the yellow stage, an advanced point in the transition to ripening in sweet cherry. Exogenous application of auxin-related compounds in the mid-season cultivar ‘Lapins’ modulated endocarp lignification and pigmentation. Notably, p-IBA treatment, which enzymatically targets the lignin pathway, transiently increased anthocyanin accumulation and reduced lignin deposition, effects that correlated with the downregulation of PavSPL gene expression. These findings highlight the interplay between lignification, color evolution, and pigment biosynthesis during the transition from development to ripening in sweet cherry fruits, and suggest a role for PavSPL genes in this transition. Full article
(This article belongs to the Special Issue Fruit Tree Physiology and Molecular Biology)
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21 pages, 3403 KiB  
Article
Extraction of Purple Prickly Pear (Opuntia ficus-indica) Mucilage by Microfiltration, Composition, and Physicochemical Characteristics
by María Carmen Fernández-Martínez, Cristian Jiménez-Martínez, Mónica Rosalía Jaime-Fonseca and Liliana Alamilla-Beltrán
Polymers 2024, 16(23), 3383; https://doi.org/10.3390/polym16233383 - 30 Nov 2024
Cited by 5 | Viewed by 2946
Abstract
Mucilages are valuable to the food industry, but the solvents used to extract and concentrate them are detrimental to the environment. Therefore, environmentally friendly technologies that preserve the properties of biopolymers and reduce the use of solvents are being sought. In this work, [...] Read more.
Mucilages are valuable to the food industry, but the solvents used to extract and concentrate them are detrimental to the environment. Therefore, environmentally friendly technologies that preserve the properties of biopolymers and reduce the use of solvents are being sought. In this work, the mucilage of Opuntia ficus-indica (mesocarp–endocarp) was extracted by two methods: In the first one, the pulp from the mesocarp–endocarp was extracted by ethanol precipitation and centrifugation cycles, then dried at room temperature. For the second, the pulp was processed in a three-step tangential microfiltration process: microfiltration (separation), diafiltration (purification), and concentration. The mucilages obtained differed significantly (p < 0.05) in color, betalains, total sugars, and proteins. The proportions of insoluble and soluble dietary fiber were similar. GC/MS analysis identified seven neutral sugars and a high content of uronic acids (31.3% in the microfiltered mucilage and 47.5% in the ethanol-precipitated mucilage). These show a low degree of esterification, which gives them a polar and hydrophilic character and the possibility of interacting with divalent ions through the carboxylic acid groups, which could form gels stabilized by an egg-box mechanism, with application as a thickening, stabilizing, gelling, or film-forming agent for foods with low sugar content. Full article
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13 pages, 914 KiB  
Review
Contribution of the LAC Genes in Fruit Quality Attributes of the Fruit-Bearing Plants: A Comprehensive Review
by Muhammad Khalil Ullah Khan, Xiaojie Zhang, Zitan Ma, Mingxia Huang, Ce Yang, Xiaoming Wang, Mengjun Liu and Jianying Peng
Int. J. Mol. Sci. 2023, 24(21), 15768; https://doi.org/10.3390/ijms242115768 - 30 Oct 2023
Cited by 4 | Viewed by 1773
Abstract
Laccase genes produce laccase enzymes that play a crucial role in the production of lignin and oxidation reactions within plants. Lignin is a complex polymer that provides structure and toughness to the cell walls of numerous fruit plants. The LAC genes that encode [...] Read more.
Laccase genes produce laccase enzymes that play a crucial role in the production of lignin and oxidation reactions within plants. Lignin is a complex polymer that provides structure and toughness to the cell walls of numerous fruit plants. The LAC genes that encode laccase enzymes play vital roles in plant physiology, including the synthesis of pigments like PA that contribute to the colors of fruits, and in defending against pathogens and environmental stresses. They are crucial for fruit development, ripening, structural maintenance in plants, and adaptation to various environmental factors. As such, these genes and enzymes are essential for plant growth and development, as well as for various biotechnological applications in environmental remediation and industrial processes. This review article emphasizes the significance of genes encoding laccase enzymes during fruit growth, specifically pertaining to the strengthening of the endocarp through lignification. This process is crucial for ensuring fruit defense and optimizing seed scattering. The information gathered in this article will aid breeders in producing future fruit-bearing plants that are resistant to disease, cost-effective, and nutrient-rich. Full article
(This article belongs to the Section Molecular Plant Sciences)
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15 pages, 2577 KiB  
Article
De Novo Assembly of a Sarcocarp Transcriptome Set Identifies AaMYB1 as a Regulator of Anthocyanin Biosynthesis in Actinidia arguta var. purpurea
by Bei Niu, Qiaohong Li, Lijuan Fan, Xiaodong Shi, Yuan Liu, Qiguo Zhuang and Xiaobo Qin
Int. J. Mol. Sci. 2022, 23(20), 12120; https://doi.org/10.3390/ijms232012120 - 11 Oct 2022
Cited by 1 | Viewed by 2383
Abstract
The kiwifruit (Actinidia arguta var. purpurea) produces oval shaped fruits containing a slightly green or mauve outer exocarp and a purple-flesh endocarp with rows of tiny black seeds. The flesh color of the fruit results from a range of anthocyanin compounds, and [...] Read more.
The kiwifruit (Actinidia arguta var. purpurea) produces oval shaped fruits containing a slightly green or mauve outer exocarp and a purple-flesh endocarp with rows of tiny black seeds. The flesh color of the fruit results from a range of anthocyanin compounds, and is an important trait for kiwifruit consumers. To elucidate the molecular mechanisms involved in anthocyanin biosynthesis of the sarcocarp during A. arguta fruit development, de novo assembly and transcriptomic profile analyses were performed. Based on significant Gene Ontology (GO) biological terms, differentially expressed genes were identified in flavonoid biosynthetic and metabolic processes, pigment biosynthesis, carbohydrate metabolic processes, and amino acid metabolic processes. The genes closely related to anthocyanin biosynthesis, such as phenylalanine ammonia-lyase (PAL), chalcone synthase (CHS), and anthocyanidin synthase (ANS), displayed significant up-regulation during fruit development according to the transcriptomic data, which was further confirmed by qRT-PCR. Meanwhile, a series of transcription factor genes were identified among the DEGs. Through a correlation analysis. AaMYB1 was found to be significantly correlated with key genes of anthocyanin biosynthesis, especially with CHS. Through a transient expression assay, AaMYB1 induced anthocyanin accumulation in tobacco leaves. These data provide an important basis for exploring the related mechanisms of sarcocarp anthocyanin biosynthesis in A. arguta. This study will provide a strong foundation for functional studies on A. arguta and will facilitate improved breeding of A. arguta fruit. Full article
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16 pages, 5429 KiB  
Article
Effects of Various Polymeric Films on the Pericarp Microstructure and Storability of Longan (cv. Shixia) Fruit Treated with Propyl Disulfide Essential Oil from the Neem (Azadirachta indica) Plant
by Muhammad Rafiullah Khan, Chongxing Huang, Rafi Ullah, Hakim Ullah, Ihsan Mabood Qazi, Taufiq Nawaz, Muhammad Adnan, Abdullah Khan, Hongxia Su and Liu Ren
Polymers 2022, 14(3), 536; https://doi.org/10.3390/polym14030536 - 28 Jan 2022
Cited by 7 | Viewed by 3256
Abstract
Plant extracts represent a rich repository of metabolites with antioxidant and antimicrobial properties. Neem (Azadirachta indica) is a medicinal plant considered the tree of the 21st century. In this study, we investigated the antioxidant and antimicrobial effects of propyl disulfide (PD), [...] Read more.
Plant extracts represent a rich repository of metabolites with antioxidant and antimicrobial properties. Neem (Azadirachta indica) is a medicinal plant considered the tree of the 21st century. In this study, we investigated the antioxidant and antimicrobial effects of propyl disulfide (PD), a major volatile compound in neem seed, against the pericarp browning (BI), microbial decay incidence (DI), and water loss of longan fruit. Fresh longan cv. Shixia samples were packaged in oriented polypropylene (OPP) and polyethene (PE) packages of different thicknesses (20, 40, and 60 µm). Sterile gauze was fixed inside the packages and 500 uL of PD was placed on them to avoid the direct contact of PD with fruit samples. Packages were sealed immediately to minimize vaporization and stored at 12 ± 1 °C for 18 days. Fruit samples packaged in open net packages served as controls. The results showed that fruit treated with PD in OPP and PE packages significantly prevented losses of water, DI, and BI compared to control treatment. PD also maintained the color, TSS values, TA values, pH values, high peel firmness, high TPC content, and high TFC content, and reduced the activity levels of PPO and POD. Scanning electron microscope (SEM) analysis indicated that the exocarp, mesocarp, and endocarp of longan peel were smooth, uniform, and compact with no free space compared to control, where crakes, a damaged and loose structure, and a lot of fungal mycelia were found. The shortest shelf life of 9 days was observed in control as compared to 18 days in OPP-20 and OPP-40; 15 days in OPP-60, PE-20, and PE-40; and 12 days in PE-60 packaging films. Therefore, PD as a natural antioxidant and antimicrobial agent, in combination with OPP-20 and OPP-40 polymeric films, could successfully be applied commercially to extend the postharvest shelf life of longan. Full article
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12 pages, 1410 KiB  
Article
The Application of Machine Learning for Cultivar Discrimination of Sweet Cherry Endocarp
by Ewa Ropelewska
Agriculture 2021, 11(1), 6; https://doi.org/10.3390/agriculture11010006 - 24 Dec 2020
Cited by 22 | Viewed by 3845
Abstract
The aim of this study was to evaluate the usefulness of the texture and geometric parameters of endocarp (pit) for distinguishing different cultivars of sweet cherries using image analysis. The textures from images converted to color channels and the geometric parameters of the [...] Read more.
The aim of this study was to evaluate the usefulness of the texture and geometric parameters of endocarp (pit) for distinguishing different cultivars of sweet cherries using image analysis. The textures from images converted to color channels and the geometric parameters of the endocarp (pits) of sweet cherry ‘Kordia’, ‘Lapins’, and ‘Büttner’s Red’ were calculated. For the set combining the selected textures from all color channels, the accuracy reached 100% when comparing ‘Kordia’ vs. ‘Lapins’ and ‘Kordia’ vs. ‘Büttner’s Red’ for all classifiers. The pits of ‘Kordia’ and ‘Lapins’, as well as ‘Kordia’ and ‘Büttner’s Red’ were also 100% correctly discriminated for discriminative models built separately for RGB, Lab and XYZ color spaces, G, L and Y color channels and for models combining selected textural and geometric features. For discrimination ‘Lapins’ and ‘Büttner’s Red’ pits, slightly lower accuracies were determined—up to 93% for models built based on textures selected from all color channels, 91% for the RGB color space, 92% for the Lab and XYZ color spaces, 84% for the G and L color channels, 83% for the Y channel, 94% for geometric features, and 96% for combined textural and geometric features. Full article
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26 pages, 16692 KiB  
Article
Achene Morphology and Anatomy of Clematis L. (Ranunculaceae) in Korea and Its Taxonomic Implications
by Balkrishna Ghimire, Beom Kyun Park, Dong Chan Son and Seung-Hwan Oh
Plants 2020, 9(10), 1279; https://doi.org/10.3390/plants9101279 - 28 Sep 2020
Cited by 10 | Viewed by 4284
Abstract
Clematis, a widely distributed genus in Ranunculaceae, is one of the most difficult groups of taxa in the family from a taxonomic point of view. A comprehensive study on achene morphology and the anatomy of 19 taxa of Clematis from Korea was [...] Read more.
Clematis, a widely distributed genus in Ranunculaceae, is one of the most difficult groups of taxa in the family from a taxonomic point of view. A comprehensive study on achene morphology and the anatomy of 19 taxa of Clematis from Korea was carried out using scanning electron and light microscopy to evaluate the taxonomic significance of achene characters. Clematis achenes are elliptical, obovate or fusiform in shape, light yellow or brown to black in color and completely or sparsely covered with hairs. The permanent style is elongated and plumose in all the studied taxa except C. brachyura. We found that the size, indument, permanent style, surface sculpture, shape in cross-section, and nature and thickness of the exocarp, and endocarp were valuable achene features for species delimitation and may contribute to the unraveling of the taxonomic problems in the genus Clematis. One-way analysis of variance (ANOVA) indicated that the quantitative achene variables among the species were highly significant (p < 0.001). Principal component analyses based on seven quantitative characters and UPGMA (unweighted pair-group method with arithmetic mean) analysis based on seven quantitative and 18 qualitative characters also signify the utility of achene features for taxonomic discriminations of the Clematis taxa within the genus. Similar to other morphological characters in the genus Clematis, achene morphological and anatomical characters with the limited taxonomic value alone cannot be expected to resolve the infrageneric relationships but certain achene features combined with other morphological features could be useful as an alternative means of determining the infrageneric relationships within the genus. Full article
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14 pages, 3139 KiB  
Article
Sequencing of Euscaphis konishii Endocarp Transcriptome Points to Molecular Mechanisms of Endocarp Coloration
by Xueyan Yuan, Weihong Sun, Xiaoxing Zou, Bobin Liu, Wei Huang, Zeming Chen, Yanlei Li, Meng-Yuan Qiu, Zhong-Jian Liu, Yanling Mao and Shuang-Quan Zou
Int. J. Mol. Sci. 2018, 19(10), 3209; https://doi.org/10.3390/ijms19103209 - 17 Oct 2018
Cited by 6 | Viewed by 3705
Abstract
Flower and fruit colors are of vital importance to the ecology and economic market value of plants. The mechanisms of flower and fruit coloration have been well studied, especially among ornamental flower plants and cultivated fruits. As people pay more attention to exocarp [...] Read more.
Flower and fruit colors are of vital importance to the ecology and economic market value of plants. The mechanisms of flower and fruit coloration have been well studied, especially among ornamental flower plants and cultivated fruits. As people pay more attention to exocarp coloration, the endocarp coloration in some species has often been ignored. Here, we report on the molecular mechanism of endocarp coloration in three development stages of Euscaphis konishii. The results show that endocarp reddening is closely related to anthocyanin accumulation, and a total of 86,120 unigenes were assembled, with a mean length of 893 bp (N50 length of 1642 bp). We identified a large number of differentially expressed genes associated with endocarp coloration, including anthocyanin biosynthesis, carotenoid biosynthesis, and chlorophyll breakdown. The genes participating in each step of the anthocyanin biosynthesis were found in the transcriptome dataset, but a few genes were found in the carotenoid biosynthesis and chlorophyll breakdown. In addition, the candidate R2R3-MYB transcription factors and candidate glutathione S-transferase transport genes, which likely regulate the anthocyanin biosynthesis, were identified. This study offers a platform for E. konishii functional genomic research and provides a reference for revealing the regulatory mechanisms of endocarp reddening. Full article
(This article belongs to the Section Molecular Plant Sciences)
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21 pages, 3412 KiB  
Review
Oenology in the Kitchen: The Sensory Experience Offered by Culinary Dishes Cooked with Alcoholic Drinks, Grapes and Grape Leaves
by Fernanda Cosme, Teresa Pinto and Alice Vilela
Beverages 2017, 3(3), 42; https://doi.org/10.3390/beverages3030042 - 21 Aug 2017
Cited by 13 | Viewed by 9949
Abstract
A good pairing is based on the complementary role of wine on the four important factors of food: components, textures, flavors and colors. Common wine and food examples of food preparation with wine or vine products, such as grapes or vine leaves, exemplify [...] Read more.
A good pairing is based on the complementary role of wine on the four important factors of food: components, textures, flavors and colors. Common wine and food examples of food preparation with wine or vine products, such as grapes or vine leaves, exemplify numerous similarities and contrasting characteristics in those four parameters, which we can find in an enjoyable meal. The knowledge of the internal anatomy and composition of both grape berries, which includes the skin, the mesocarp and the endocarp, and vine leaf, which includes the vascular system, parenchymatous mesophyll and epidermis, is essential to know how to develop new, tastier and healthier dishes. An understanding of these ideas is important when defining gastronomic tourism strategies and even local restaurant concepts and ideas. The aim of this review is to provide some insights about the sensory experiences offered by culinary dishes cooked with grapes, vine leaves and wines and other alcoholic beverages like distilled spirits and liqueurs, bearing in mind that wine will be the drink of elation for accompanying such dishes. Full article
(This article belongs to the Special Issue Food and Wine Pairing)
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17 pages, 1034 KiB  
Article
Identification of Differentially Expressed Genes between “Honeycrisp” and “Golden Delicious” Apple Fruit Tissues Reveal Candidates for Crop Improvement
by Scott Schaeffer, Christopher Hendrickson, Rachel Fox and Amit Dhingra
Horticulturae 2016, 2(3), 11; https://doi.org/10.3390/horticulturae2030011 - 17 Aug 2016
Cited by 4 | Viewed by 5748
Abstract
Cultivars of the same species exhibit a large degree of variation in fruit quality traits, which can be directly influenced by differences in gene expression due to allelic variations and interactions with the environment. For Malus × domestica Borkh. (apple), fruit quality traits, [...] Read more.
Cultivars of the same species exhibit a large degree of variation in fruit quality traits, which can be directly influenced by differences in gene expression due to allelic variations and interactions with the environment. For Malus × domestica Borkh. (apple), fruit quality traits, including color, texture, aroma, flavor profile, and shelf life, are of utmost economic importance. In order to identify genes potentially influencing these traits, a direct comparative transcriptome profiling approach, based on the differential display technique, was performed using “Golden Delicious” and “Honeycrisp” apple endocarp and peel tissues. A total of 45 differentially expressed sequence tags were identified between the two apple varieties. Reanalysis of a previously published fruit developmental microarray expression experiment revealed that only one of the 45 sequence tags was represented on the array. Differential expression of 31 sequence tags from the peel tissue was validated using quantitative reverse transcription PCR, confirming the robustness of the differential display approach to quickly identify differentially expressed sequence tags. Among these were genes annotated to be involved in ripening, phytohormone signaling, transcription factors, and fruit texture. This work demonstrates yet again the utility of the differential display technique to rapidly identify genes related to desirable traits. Full article
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