Search Results (128)

The Atlantic blue crab (Callinectes sapidus) has rapidly expanded across the Mediterranean, raising concerns over its ecological and economic impacts. This study examines the morphometric characteristics and environmental influences on C. sapidus populations in the Palud-Palù swamp (western Istrian coast) from 2022 to 2024. A total of 203 specimens were analyzed for carapace width, length, depth, and body mass, alongside monthly measurements of temperature, salinity, oxygen saturation, and pH. Statistical analyses (t-tests, ANOVA, PCA, and RDA) revealed pronounced sexual dimorphism, with males consistently larger than females. Interannual differences in size distribution showed larger individuals in 2022, followed by a decline in 2023 and 2024, likely due to environmental stressors (e.g., salinity, temperature, hypoxia) and increased anthropogenic pressures (e.g., trapping and illegal harvesting). RDA identified temperature, oxygen saturation, and pH as key abiotic drivers of morphometric variation. These findings suggest that while C. sapidus demonstrates physiological plasticity, enabling its persistence in estuarine environments, its growth and invasive potential may be constrained under extreme or suboptimal local conditions. This study highlights the importance of long-term monitoring and integrated management to mitigate ecological disruption in sensitive coastal ecosystems. Full article

Weight traits serve as key economic indicators for assessing growth performance and commercial quality in the mud crab Scylla paramamosain, yet the genetic basis of these traits remains poorly characterized. Here, we performed whole-genome resequencing on 323 individuals and conducted genome-wide association studies (GWAS) on five weight-related traits: (1) body-related traits, including body weight (BW), trunk weight (TruW), and weight excluding chelae (WEC); (2) appendage-related traits, containing appendage weight (AppW) and cheliped weight (CheW). Significantly associated SNPs were primarily enriched on chromosomes 15, 22, 25, and 36. For body-related traits, we identified 45 shared candidate SNPs and 175 common candidate genes; appendage-related traits revealed 71 shared candidate SNPs, and 229 common genes were identified; and across all five traits, there were 9 shared candidate SNPs and 49 common genes. Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) analyses indicated that shared functional terms/pathways among the five traits were mainly related to metabolism, development, and immunity. Body-related traits exhibited more unique GO terms and KEGG pathways associated with metabolism and immunity, whereas appendage-related traits showed some unique GO terms and KEGG pathways involved in development and morphogenesis. Among the candidate genes, we identified multiple genes associated with growth and development, metabolism, and immune responses. For example, the CCHa1R gene, common to carapace-related traits, is linked to feeding; the DCX-EMA gene, which is common to appendage-related traits, is connected to movement, and the MSTO1 gene is pertinent to muscle development. Among the candidate genes shared by all five traits, there are a series of genes concerning growth and development (such as NVD, CYP307A1, FGF1, NF2, ANKRD52) and immune responses (RGS10). These findings advance our understanding of the genetic architecture underlying decapod crustacean growth and provide valuable insights for optimizing sustainable breeding strategies in S. paramamosain. Full article

Macrobrachium rosenbergii, commonly known as giant freshwater prawns (GFPs), is an economically and nutritionally important decapod crustacean species in China. Understanding the genetic diversity of selective breeding populations is crucial in breeding plans for selecting genetically diverse broodstocks and maintaining genetic diversity. The genetic structure of six breeding populations (Hefu (HF), Nantaihu No.2 (NTH), Jiaxin (JX), Shufeng (SF), Taiwan (TW), and Guangxi (GX)) of GFP in China was examined using 16 newly developed microsatellite loci and the mitochondrial control region (D-loop). The microsatellite data revealed that all 16 loci have high diversity, with all values of polymorphism information content (PIC) more than 0.5. The average expected heterozygosity (He, 0.89) and the number of alleles (Na, 18.25) of SF were the highest, followed by He (0.89) and Na (14.75) of the JX, and GX has the lowest He (0.83) and Na (11.31). The average PIC value for the six stocks ranged from 0.80 to 0.87. Pairwise comparisons revealed that Fst ranged from 0.03541 to 0.09637 and was significant (p < 0.05) between most populations, indicating from low to moderate genetic differentiation among the six populations. The D-loop analysis identified 114 variable sites and 29 haplotypes, with an average haplotype diversity (Hd) and nucleotide diversity (π) of 0.640 and 0.01247, respectively. Genetic differentiation among the six populations based on the D-loop was from moderate to high, with Fst values of 0.05603–0.80788, and all p < 0.05. This study demonstrates that selective breeding stocks of M. rosenbergii in China show moderate to high genetic diversity and have the potential for further selective breeding, providing a theoretical basis for conserving and utilizing M. rosenbergii genetic resources. Full article

Feeding habits of the four-spotted megrim, Lepidorhombus boscii, from the eastern Adriatic Sea were examined. A total of 1070 individuals collected using a bottom trawl net between July 2020 and June 2021 were analyzed. A high percentage of empty stomachs (63.27%) was recorded. The food composition proved that L. boscii is a carnivorous species. The identified prey of L. boscii was divided into seven groups: Teleostei, Bivalvia, Gastropoda, Cephalopoda, Isopoda, Mysida, and Decapoda. Decapods were the most important prey (%IRI = 58.18), followed by cephalopods (%IRI = 10.93). At the species level, the most important prey were the decapods Parapeneus longirostris (%IRI = 11.48) and Goneplax rhomboides (%IRI = 5.92). Statistically significant seasonal variations in diet were recorded; decapods dominated in spring, summer, and winter, whereas cephalopods prevailed in autumn. There were no statistically significant differences in the food composition between the three size categories. Decapods were the most important prey in all size categories (%IRI > 50). The lowest feeding intensity, as well as the highest percentage of empty stomachs, was recorded in winter, which is also the main spawning season of this species in the Adriatic Sea. Full article

Background/Objectives: Freshwater shrimps of the family Atyidae, particularly the hyperdiverse genus Caridina, are keystone decomposers in tropical aquatic ecosystems and valuable aquaculture resources. However, their evolutionary relationships remain unresolved due to conflicting morphological and molecular evidence. Here, we sequenced and characterized the complete mitochondrial genome of Caridina mariae (Tiger Shrimp), aiming to (1) elucidate its genomic architecture, and (2) reconstruct a robust phylogeny of Caridea using 155 decapod species to address long-standing taxonomic uncertainties. Methods: Muscle tissue from wild-caught C. mariae (voucher ID: KIZ-2023-001, Guangdong, China) was subjected to Illumina NovaSeq 6000 sequencing (150 bp paired-end). The mitogenome was assembled using MITObim v1.9, annotated via MITOS2, and validated by PCR. Phylogenetic analyses employed 13 protein-coding genes under Bayesian inference (MrBayes v3.2.7; 10⁶ generations, ESS > 200) and maximum likelihood (RAxML v8.2.12; 1000 bootstraps), with Harpiosquilla harpax as the outgroup. The best-fit substitution model (MtZoa + F + I + G4) was selected via jModelTest v2.1.10. Results: The 15,581 bp circular mitogenome encodes 37 genes (13 PCGs, 22 tRNAs, and 2 rRNAs) and an A + T-rich control region (86.7%). Notably, trnS1 lacks the dihydrouracil arm—a rare structural deviation in Decapoda. The 13 PCGs exhibit moderate nucleotide skew (AT = 0.030; GC = −0.214), while nad5, nad4, and nad6 show significant GC-skew. Phylogenomic analyses strongly support (PP = 1.0; BS = 95) a novel sister-group relationship between Halocaridinidae and Typhlatyinae, contradicting prior morphology-based classifications. The monophyly of Penaeoidea, Astacidea, and Caridea was confirmed, but Eryonoidea and Crangonoidea formed an unexpected clade. Conclusions: This study provides the first mitogenomic framework for C. mariae, revealing both conserved features (e.g., PCG content) and lineage-specific innovations (e.g., tRNA truncation). The resolved phylogeny challenges traditional Caridea classifications and highlights convergent adaptation in freshwater lineages. These findings offer molecular tools for the conservation prioritization of threatened Caridina species and underscore the utility of mitogenomics in decapod systematics. Full article

Various photographs of the West Atlantic hoary rubble crab, Banareia palmeri (Rathbun, 1894), published on the internet show individuals being perched on branching octocorals. This habitat relationship has not been given attention in the scientific literature. The crab belongs to the brachyuran decapod family Xanthidae, which includes other species that associate with corals and zoantharians. Other aspects of the biology of B. palmeri, such as its diet, are unknown. During a night dive in Bonaire, an individual of B. palmeri was observed cutting off the tip of a sea rod, Pseudoplexaura sp., and pulling the loose fragment to its hiding place. The crab has also been observed in association with other octocoral species, such as Gorgonia ventalina Linnaeus, 1758. Close examination of the crab’s claws revealed that the inner edges resemble saws by bearing tooth-like structures with sharp edges, which explains how this animal is able to cut through the coral’s soft tissue and horny axis. These findings suggest that the crab is an expert in clipping octocoral branches, which may explain why some sea rod branches can be observed missing their original rounded tips and have regenerated pointy ends instead. Considering the octocoral’s regeneration capacity, it would be relevant to study how fast these branch tips are able to heal and whether fragments escaping from the crab’s claws are able to survive. Future examination of the crab’s gut contents and aquarium experiments may be able to provide more information about its dietary preferences. Full article

This study investigated the population dynamics, growth, reproduction, and parasitism of Penaeus aztecus over a 27-month period in Antalya Bay (Eastern Mediterranean). P. aztecus was the most abundant shrimp species, comprising 53.4% of the collected shrimp specimens. Abundance varied seasonally, with peak densities in summer. Males had a smaller mean carapace length (CL) of 25.8 mm compared to females at 30.2 mm. Females dominated larger size classes, with all individuals ≥ 46 mm CL being female. The sex ratio was balanced at 1:1, with no seasonal variations. Spawning occurred year-round, peaking in June, late summer, and November. Females displayed four ovarian stages, with the first mature size (FMS) at 36 mm CL. Parasitism by Epipenaeon ingens reduced the density of mature females, with 42% of potential spawners failing to develop gonads. The prevalence of parasitism showed seasonal variation and was inversely correlated with sea surface temperature (SST). Marine recruitment occurred from June to November, with a peak between July and September. Growth analysis revealed faster rates in females, while males reached a smaller maximum size. This study also identified inefficiencies in gear selectivity, with many juvenile shrimp (below recruitment size) being retained. Trawl efficiency improved with the use of turtle excluder devices (TEDs), which reduced bycatch of nontarget species, such as loggerhead turtles and cartilaginous fishes. The instantaneous total mortality rate (Z) ranged from 0.658 to 0.026 month⁻¹ for male shrimp and from 1.00 to 0.014 month⁻¹ for female shrimp, with survival sharply declining after recruitment, leaving only about 3.6% of individuals surviving beyond 10 months. Full article

Early discussions about possible pain in crustaceans often comprised speculation and anecdotes. Experiments to investigate pain took guidance from these early debates, and from studies on other taxa. Many experiments provided data that are consistent with the idea of pain. However, that does not mean that pain has been proved, but they open the possibility. With each study that is consistent with pain being felt, the probability increases, but we will probably never have conclusive proof. Some responses appear to be nociceptive reflexes; however, they at least indicate that the animal responds to stimuli such as tissue damage, heat, acid, alkaline, or electric shock. The data are said to be consistent with pain only if they cannot be explained by reflexes. These studies have encouraged various organisations to improve the welfare of crustaceans, e.g., PETA, Crustacean Compassion, RSPCA, British Veterinary Association, UFAW, and HSA. They also formed much of the evidence included in the highly influential review of sentience for the UK government that resulted in the inclusion of decapod crustaceans in the Animal Welfare (Sentience) Act 2022. This recognises that decapod crustaceans are sentient. By contrast, the New York Declaration recognises there is a possibility of sentience. Others have argued against the idea of pain in crustaceans. Nevertheless, the 2022 Act provided an impetus to groups that campaign for improved welfare. Some UK retailers now require improved slaughter techniques for the shrimp/prawn they sell, and electrical stunning is the preferred slaughter method. Full article

This study presents the second phase of a year-long investigation comparing multiple PCR analyses and histological examinations to confirm the presence of characteristic lesions of each pathogen in three different regions of Latin America. More than 20 agents, including DNA and RNA viruses, bacteria and microsporidia, have been targeted. In addition to wild Penaeus vannamei, which was studied previously, samples of wild P. stylirostris and P. monodon were included. Notably, a positive PCR test result alone does not confirm the presence of a viable pathogen or a disease state. Similarly, positive PCR results do not necessarily correlate with the presence of histological lesions characteristic of the targeted pathogen. Wenzhou shrimp virus 8 (WzSV8) was found to be widespread among shrimp in all regions, including both farm-raised and wild populations. Histopathological analysis indicated that shrimp typically presented coinfections, such as WzSV8, Decapod hepanhamaparvovirus (DHPV), chronic midgut inflammation, and tubule distension/epithelial atrophy, consistent with the toxicity of Pir A/B or another bacterial toxin. Bacterial muscle necrosis was also found in some regions. In general, bacterial infection was the dominant pathology in all three regions during the year. We also postulate that both WzSV8 and DHPV can infect not only hepatopancreatic cells but also cells in the ceca and intestine. Full article

An oceanographic cruise from the southern Adriatic to the northern Ionian Sea in May 2013 allowed us to describe the spatial abundance and distribution of decapod crustacean larval assemblages with a multidisciplinary approach. Seventeen locations on the Apulian and Albanian shelves and offshore waters, including the Strait of Otranto, were sampled by a BIONESS electronic multinet. A swarm of zoeae (11 Brachyura taxa, mostly at first instar, with Xantho granulicarpus at 87%) was recorded in the neuston of the Italian side. Decapod larvae were concentrated in the first 20–30 m surface layer, strongly linked to the thermocline and generally above the Deep Chlorophyll Maximum (DCM), suggesting that they are carried by surface water circulation. The migratory behavior of decapod larvae in coastal stations is quite regular at between 20 and 60 m depths and independent of the time of day. In offshore stations, migration is compatible with the day–night cycle, where a minimum Weighted Mean Depth (WMD) value is evident at about 20 m at night. The availability of four satellite-tracked surface drifters in the same area and during the period of larvae presence presented a possibility to explore the link between the geographic dispersal of larvae and their surface circulation in successive days. Only one drifter crossed the south Adriatic, passing from the Italian to the Balkan neritic area, taking about 40 days. The actual genetic homogeneity of many Brachyura coastal species populations on opposite sides of the Adriatic Sea suggests the existence of a genetic connection that does not rely exclusively on larvae circulation and appears to be fueled by additional strategies of biological communication. Full article

RNA interference (RNAi)-based biotechnology has been previously implemented in decapod crustaceans. Unlike traditional RNAi methodologies that investigate single gene silencing, we employed a multigene silencing approach in decapods based on chimeric double-stranded RNA (dsRNA) molecules coined ‘gene blocks’. Two dsRNA constructs, each targeting three genes of the crustacean hyperglycaemic hormone (CHH) superfamily of neuropeptides, were produced: Type II construct targeting Cq-Molt-inhibiting hormone 1 (MIH1), Cq-MIH-like 1 (MIHL1), and Cq-MIHL2 isoforms and Type I construct targeting Cq-ion transport peptide (Cq-ITP; a putative hybrid of CHH and MIH) and Cq-CHH and Cq-CHH-like (CHHL) isoforms. Both constructs were injected into juvenile redclaw crayfish, Cherax quadricarinatus, to determine the effects of multigene knockdown on molting and developmental processes. A 20-Hydroxyecdysone (20E) enzyme-linked immunosorbent assay (ELISA) and glucose assay were used to determine the effects of RNAi on molting and hemolymph glycemic activities, respectively. Multigene silencing reduced the intermolt interval by 23%. Statistically significant elevated 20E was recorded in treated intermolt individuals, consistent with the reduced intermolt interval as well as unique and abnormal phenotypes related to the molting process, which indicates a shift in 20E-induced cascade. There was no effect of RNAi treatment on hemolymph glucose level or molt increment. Through multigene silencing and subsequent annotation of gene networks, gene blocks may provide a tailored approach to investigate complex polygenic traits with RNAi in a more efficient and scalable manner. Full article

The best practice for killing decapod crustaceans lacking a centralized ganglion has been debated for a century. Currently, there is a movement away from live boiling towards electrocution and mechanical splitting or spiking, which are efficient in the large commercial setting but may be unavailable and impractical for small decapods such as shrimp and prawn in the small-scale setting of, e.g., the household. Here, using carcasses of varying sizes of prawn, crayfish, lobster and green and brown crab, we used micro-CT imaging to measure surface area and sphericity in relation to body mass. Then, we measured heating profiles at the anterior ganglion and in the core of carcasses of the same species when exposed to standardized boiling regimes. We found a relationship with positive allometry between surface area and body mass for all species and a decrease in sphericity with mass. Heating times until proposed stunning (26 °C) and killing (44 °C) varied with body size and starting temperature and exceeded minutes for larger species. For a small species like prawn, times to stunning and killing by boiling are comparable to electrocution times and within the acceptable range compared to recreational killing of other sentient beings such as game mammals. Full article

Grimothea monodon, an important fishery resource in the Humboldt Current marine ecosystem (HCE), present two contrasting morphotypes (PM, pelagic morphotype; BM, benthic morphotype). The fishery management of G. monodon is focused on understanding only fishery aspects that apply to a limited area, and there are currently no studies that evaluate the nutritional status of these morphotypes. This study evaluated the biological performance of PM and BM, analyzing the body (size, CL; weight, W; condition factor, Kn) and biochemical condition (glucose, G; proteins, P; lipids, L; fatty acids, FAs). The results reveal that G. monodon showed differences in CL and W between morphotypes, with higher values in BM than PM. The Kn was different between morphotypes with a tendency of isometric growth. In turn, the G contents were higher in PM than BM, while the contents of P, L, and FAs showed an opposite tendency, with higher contents recorded in BM than PM. Our findings suggest that the Kn should be included to strengthen the biological parameters and their relationships used in fishery management models. Differences in the biochemical condition between morphotypes can be considered potentially adaptive, in response to the combined effect of environmental factors that vary in the HCE. Full article

The rapid growth of shrimp farming, particularly of Penaeus vannamei, accounts for about 80% of the global production of farmed shrimp and involves the cultivation of approximately 383 to 977 billion individuals annually, which highlights the urgent need to address the ethical and technical implications of raising potentially sentient beings. This study builds on the state-of-the-art assessment of sentience, consciousness, stress, distress, nociception, pain perception, and welfare to adapt the General Welfare Index (GWI) for farmed shrimp. The GWI is a quantitative index developed by our research group to measure the degree of welfare in aquaculture, and it has been previously applied to grass carp and tilapia. Using the PRISMA methodology and the creation of a hypothetical shrimp farm, the GWI, with 31 specific and measurable indicators across various welfare domains, is adapted to P. vannamei, offering a comprehensive assessment framework. The inclusion of quantitative welfare indicators promises to improve living conditions in alignment with legislation adopted on decapods’ sentience and contemporary scientific advances. Full article

The lower Messinian Calcare di Rosignano Formation (Tuscany, Italy, 43° N) preserves one of the youngest and northernmost examples of coral reefs in the Mediterranean. The outcropping succession of the Acquabona quarry consists of four main facies, namely, in ascending stratigraphic order: (1) coral boundstone, (2) coralline algal rudstone, (3) serpulid floatstone to packstone, and (4) peloidal packstone to grainstone. The succession displays a trend toward increasingly more shallow conditions and progressively more restricted water circulation. The coral reef displays a limited coral biodiversity and a remarkable abundance of heterotrophs, similar to modern coral reefs developed at the edges of the ecological niche of symbiont-bearing colonial corals. The widespread presence of coral colonies pervasively encrusted by coralline algae and benthic foraminifera suggests that short-term environmental perturbations caused temporary shutdowns of the coral-dominated carbonate factory. Moving upwards, there are fewer corals and more highly adaptable carbonate producers like coralline algae and serpulids. This suggests that the decline of corals had been caused by the conditions in the basin becoming more stressful, up to the collapse of the coral community. The overall succession indicates that coral-dominated ecosystems located at the edges of the coral zone are very sensitive; they can be affected even by minor perturbations and easily collapse if negative conditions persist. Full article