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Keywords = computational ethology

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34 pages, 692 KB  
Review
The Complexity of Communication in Mammals: From Social and Emotional Mechanisms to Human Influence and Multimodal Applications
by Krzysztof Górski, Stanisław Kondracki and Katarzyna Kępka-Borkowska
Animals 2026, 16(2), 265; https://doi.org/10.3390/ani16020265 - 15 Jan 2026
Abstract
Communication in mammals constitutes a complex, multimodal system that integrates visual, acoustic, tactile, and chemical signals whose functions extend beyond simple information transfer to include the regulation of social relationships, coordination of behaviour, and expression of emotional states. This article examines the fundamental [...] Read more.
Communication in mammals constitutes a complex, multimodal system that integrates visual, acoustic, tactile, and chemical signals whose functions extend beyond simple information transfer to include the regulation of social relationships, coordination of behaviour, and expression of emotional states. This article examines the fundamental mechanisms of communication from biological, neuroethological, and behavioural perspectives, with particular emphasis on domesticated and farmed species. Analysis of sensory signals demonstrates that their perception and interpretation are closely linked to the physiology of sensory organs as well as to social experience and environmental context. In companion animals such as dogs and cats, domestication has significantly modified communicative repertoires ranging from the development of specialised facial musculature in dogs to adaptive diversification of vocalisations in cats. The neurobiological foundations of communication, including the activity of the amygdala, limbic structures, and mirror-neuron systems, provide evidence for homologous mechanisms of emotion recognition across species. The article also highlights the role of communication in shaping social structures and the influence of husbandry conditions on the behaviour of farm animals. In intensive production environments, acoustic, visual, and chemical signals are often shaped or distorted by crowding, noise, and chronic stress, with direct consequences for welfare. Furthermore, the growing importance of multimodal technologies such as Precision Livestock Farming (PLF) and Animal–Computer Interaction (ACI) is discussed, particularly their role in enabling objective monitoring of emotional states and behaviour and supporting individualised care. Overall, the analysis underscores that communication forms the foundation of social functioning in mammals, and that understanding this complexity is essential for ethology, animal welfare, training practices, and the design of modern technologies facilitating human–animal interaction. Full article
(This article belongs to the Section Human-Animal Interactions, Animal Behaviour and Emotion)
23 pages, 28831 KB  
Article
Micro-Expression-Based Facial Analysis for Automated Pain Recognition in Dairy Cattle: An Early-Stage Evaluation
by Shuqiang Zhang, Kashfia Sailunaz and Suresh Neethirajan
AI 2025, 6(9), 199; https://doi.org/10.3390/ai6090199 - 22 Aug 2025
Viewed by 2066
Abstract
Timely, objective pain recognition in dairy cattle is essential for welfare assurance, productivity, and ethical husbandry yet remains elusive because evolutionary pressure renders bovine distress signals brief and inconspicuous. Without verbal self-reporting, cows suppress overt cues, so automated vision is indispensable for on-farm [...] Read more.
Timely, objective pain recognition in dairy cattle is essential for welfare assurance, productivity, and ethical husbandry yet remains elusive because evolutionary pressure renders bovine distress signals brief and inconspicuous. Without verbal self-reporting, cows suppress overt cues, so automated vision is indispensable for on-farm triage. Although earlier systems tracked whole-body posture or static grimace scales, frame-level detection of facial micro-expressions has not been explored fully in livestock. We translate micro-expression analytics from automotive driver monitoring to the barn, linking modern computer vision with veterinary ethology. Our two-stage pipeline first detects faces and 30 landmarks using a custom You Only Look Once (YOLO) version 8-Pose network, achieving a 96.9% mean average precision (mAP) at an Intersection over the Union (IoU) threshold of 0.50 for detection and 83.8% Object Keypoint Similarity (OKS) for keypoint placement. Cropped eye, ear, and muzzle patches are encoded using a pretrained MobileNetV2, generating 3840-dimensional descriptors that capture millisecond muscle twitches. Sequences of five consecutive frames are fed into a 128-unit Long Short-Term Memory (LSTM) classifier that outputs pain probabilities. On a held-out validation set of 1700 frames, the system records 99.65% accuracy and an F1-score of 0.997, with only three false positives and three false negatives. Tested on 14 unseen barn videos, it attains 64.3% clip-level accuracy (i.e., overall accuracy for the whole video clip) and 83% precision for the pain class, using a hybrid aggregation rule that combines a 30% mean probability threshold with micro-burst counting to temper false alarms. As an early exploration from our proof-of-concept study on a subset of our custom dairy farm datasets, these results show that micro-expression mining can deliver scalable, non-invasive pain surveillance across variations in illumination, camera angle, background, and individual morphology. Future work will explore attention-based temporal pooling, curriculum learning for variable window lengths, domain-adaptive fine-tuning, and multimodal fusion with accelerometry on the complete datasets to elevate the performance toward clinical deployment. Full article
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38 pages, 2098 KB  
Review
Rethinking Poultry Welfare—Integrating Behavioral Science and Digital Innovations for Enhanced Animal Well-Being
by Suresh Neethirajan
Poultry 2025, 4(2), 20; https://doi.org/10.3390/poultry4020020 - 29 Apr 2025
Cited by 6 | Viewed by 7277
Abstract
The relentless drive to meet global demand for poultry products has pushed for rapid intensification in chicken farming, dramatically boosting efficiency and yield. Yet, these gains have exposed a host of complex welfare challenges that have prompted scientific scrutiny and ethical reflection. In [...] Read more.
The relentless drive to meet global demand for poultry products has pushed for rapid intensification in chicken farming, dramatically boosting efficiency and yield. Yet, these gains have exposed a host of complex welfare challenges that have prompted scientific scrutiny and ethical reflection. In this review, I critically evaluate recent innovations aimed at mitigating such concerns by drawing on advances in behavioral science and digital monitoring and insights into biological adaptations. Specifically, I focus on four interconnected themes: First, I spotlight the complexity of avian sensory perception—encompassing vision, auditory capabilities, olfaction, and tactile faculties—to underscore how lighting design, housing configurations, and enrichment strategies can better align with birds’ unique sensory worlds. Second, I explore novel tools for gauging emotional states and cognition, ranging from cognitive bias tests to developing protocols for identifying pain or distress based on facial cues. Third, I examine the transformative potential of computer vision, bioacoustics, and sensor-based technologies for the continuous, automated tracking of behavior and physiological indicators in commercial flocks. Fourth, I assess how data-driven management platforms, underpinned by precision livestock farming, can deploy real-time insights to optimize welfare on a broad scale. Recognizing that climate change and evolving production environments intensify these challenges, I also investigate how breeds resilient to extreme conditions might open new avenues for welfare-centered genetic and management approaches. While the adoption of cutting-edge techniques has shown promise, significant hurdles persist regarding validation, standardization, and commercial acceptance. I conclude that truly sustainable progress hinges on an interdisciplinary convergence of ethology, neuroscience, engineering, data analytics, and evolutionary biology—an integrative path that not only refines welfare assessment but also reimagines poultry production in ethically and scientifically robust ways. Full article
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21 pages, 1719 KB  
Article
The Warmth of Sarudango: Modelling the Huddling Behaviour of Japanese Macaques (Macaca fuscata)
by Cédric Sueur, Shintaro Ishizuka, Yu Kaigaishi and Shinya Yamamoto
Animals 2024, 14(23), 3468; https://doi.org/10.3390/ani14233468 - 1 Dec 2024
Cited by 2 | Viewed by 2268
Abstract
Huddling behaviour is observed across various mammalian and avian species. Huddling, a behaviour wherein animals maintain close physical contact with conspecifics for warmth and social bonding, is widely documented among species in cold environments as a crucial thermoregulatory mechanism. Interestingly, on Shodoshima, Japanese [...] Read more.
Huddling behaviour is observed across various mammalian and avian species. Huddling, a behaviour wherein animals maintain close physical contact with conspecifics for warmth and social bonding, is widely documented among species in cold environments as a crucial thermoregulatory mechanism. Interestingly, on Shodoshima, Japanese macaques form exceptionally large huddling clusters, often exceeding 50 individuals, a significant deviation from the smaller groups observed in other populations (Arashyama, Katsuyama, and Taksakiyama) and climates. This study aims to uncover the mechanisms behind the formation and size of these huddling clusters, proposing that such behaviours can be explained by simple probabilistic rules influenced by environmental conditions, the current cluster size, and individual decisions. Employing a computational model developed in Netlogo, we seek to demonstrate how emergent properties like the formation and dissolution of clusters arise from collective individual actions. We investigate whether the observed differences in huddling behaviour, particularly the larger cluster sizes on Shodoshima compared to those in colder habitats, reflect variations in social tolerance and cohesion. The model incorporates factors such as environmental temperature, cluster size, and individual decision-making, offering insights into the adaptability of social behaviours under environmental pressures. The findings suggest that temperature plays a crucial role in influencing huddling behaviour, with larger clusters forming in colder climates as individuals seek warmth. However, the study also highlights the importance of joining and leaving a cluster in terms of probability in the dynamics of huddling behaviour. We discussed the large clusters on Shodoshima as a result of a combination of environmental factors and a unique social tolerance and cohesion among the macaques. This study contributes to our understanding of complex social phenomena through the lens of self-organisation, illustrating how simple local interactions can give rise to intricate social structures and behaviours. Full article
(This article belongs to the Section Ecology and Conservation)
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8 pages, 5173 KB  
Communication
Evaluation of Mud Worm (Polydora spp.) Infestation in Cupped (Crassostrea gigas) and Flat Oyster (Ostrea edulis) Broodstocks: Comparison between Magnetic Resonance Imaging and Computed Tomography
by Livio Galosi, Fabrizio Dini, Marina C. T. Meligrana, Lorenzo Gennari, Elena Tamburini and Alessandra Roncarati
Animals 2024, 14(2), 242; https://doi.org/10.3390/ani14020242 - 12 Jan 2024
Cited by 2 | Viewed by 1999
Abstract
The Polichete worms of the genus Polydora are considered very destructive for oysters, excavating channels in their shell and inducing oysters to create mud blisters in response to the irritation, interfering with their physiology and ethology. The parasite also causes important economic damage [...] Read more.
The Polichete worms of the genus Polydora are considered very destructive for oysters, excavating channels in their shell and inducing oysters to create mud blisters in response to the irritation, interfering with their physiology and ethology. The parasite also causes important economic damage for oyster farmers, as products with a high degree of infestation cannot be commercialized. The present study aims to evaluate whether two non-invasive advanced diagnostic techniques, computed tomography scans (CT) and magnetic resonance imaging (MRI), are suitable to show the alterations induced by this parasite on live Crassostrea gigas and Ostrea edulis oyster broodstocks. A CT scan is also able to identify small lesions in the shell during the first stage of infection. MRI allows for the visualization of the advanced status of the lesions when blisters occupy the inner surface of the shell and can impact the health status and the economic value of the mollusk. Both techniques resulted in satisfactory spatial resolution, and no motion artifacts were reported, thus enabling the authors to faithfully visualize in vivo the damage caused by the parasite. Full article
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20 pages, 1017 KB  
Review
Information Theory Opens New Dimensions in Experimental Studies of Animal Behaviour and Communication
by Zhanna Reznikova
Animals 2023, 13(7), 1174; https://doi.org/10.3390/ani13071174 - 26 Mar 2023
Cited by 4 | Viewed by 5246
Abstract
Over the last 40–50 years, ethology has become increasingly quantitative and computational. However, when analysing animal behavioural sequences, researchers often need help finding an adequate model to assess certain characteristics of these sequences while using a relatively small number of parameters. In this [...] Read more.
Over the last 40–50 years, ethology has become increasingly quantitative and computational. However, when analysing animal behavioural sequences, researchers often need help finding an adequate model to assess certain characteristics of these sequences while using a relatively small number of parameters. In this review, I demonstrate that the information theory approaches based on Shannon entropy and Kolmogorov complexity can furnish effective tools to analyse and compare animal natural behaviours. In addition to a comparative analysis of stereotypic behavioural sequences, information theory can provide ideas for particular experiments on sophisticated animal communications. In particular, it has made it possible to discover the existence of a developed symbolic “language” in leader-scouting ant species based on the ability of these ants to transfer abstract information about remote events. Full article
(This article belongs to the Special Issue Recent Advances in Animal Cognition and Ethology)
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18 pages, 4355 KB  
Article
A Non-Invasive Millimetre-Wave Radar Sensor for Automated Behavioural Tracking in Precision Farming—Application to Sheep Husbandry
by Alexandre Dore, Cristian Pasquaretta, Dominique Henry, Edmond Ricard, Jean-François Bompa, Mathieu Bonneau, Alain Boissy, Dominique Hazard, Mathieu Lihoreau and Hervé Aubert
Sensors 2021, 21(23), 8140; https://doi.org/10.3390/s21238140 - 6 Dec 2021
Cited by 5 | Viewed by 4211
Abstract
The automated quantification of the behaviour of freely moving animals is increasingly needed in applied ethology. State-of-the-art approaches often require tags to identify animals, high computational power for data collection and processing, and are sensitive to environmental conditions, which limits their large-scale utilization, [...] Read more.
The automated quantification of the behaviour of freely moving animals is increasingly needed in applied ethology. State-of-the-art approaches often require tags to identify animals, high computational power for data collection and processing, and are sensitive to environmental conditions, which limits their large-scale utilization, for instance in genetic selection programs of animal breeding. Here we introduce a new automated tracking system based on millimetre-wave radars for real time robust and high precision monitoring of untagged animals. In contrast to conventional video tracking systems, radar tracking requires low processing power, is independent on light variations and has more accurate estimations of animal positions due to a lower misdetection rate. To validate our approach, we monitored the movements of 58 sheep in a standard indoor behavioural test used for assessing social motivation. We derived new estimators from the radar data that can be used to improve the behavioural phenotyping of the sheep. We then showed how radars can be used for movement tracking at larger spatial scales, in the field, by adjusting operating frequency and radiated electromagnetic power. Millimetre-wave radars thus hold considerable promises precision farming through high-throughput recording of the behaviour of untagged animals in different types of environments. Full article
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21 pages, 2051 KB  
Article
Prediction of Tail Biting Events in Finisher Pigs from Automatically Recorded Sensor Data
by Mona Lilian Vestbjerg Larsen, Lene Juul Pedersen and Dan Børge Jensen
Animals 2019, 9(7), 458; https://doi.org/10.3390/ani9070458 - 19 Jul 2019
Cited by 26 | Viewed by 6048
Abstract
Tail biting in pigs is an animal welfare problem, and tail biting should be prevented from developing into tail damage. One strategy could be to predict events of tail biting so that the farmer can make timely interventions in specific pens. In the [...] Read more.
Tail biting in pigs is an animal welfare problem, and tail biting should be prevented from developing into tail damage. One strategy could be to predict events of tail biting so that the farmer can make timely interventions in specific pens. In the current investigation, sensor data on water usage (water flow and activation frequency) and pen temperature (above solid and slatted floor) were included in the development of a prediction algorithm for tail biting. Steps in the development included modelling of data sources with dynamic linear models, optimisation and training of artificial neural networks and combining predictions of the single data sources with a Bayesian ensemble strategy. Lastly, the Bayesian ensemble combination was tested on a separate batch of finisher pigs in a real-life setting. The final prediction algorithm had an AUC > 0.80, and thus it does seem possible to predict events of tail biting from already available sensor data. However, around 30% of the no-event days were false alarms, and more event-specific predictors are needed. Thus, it was suggested that farmers could use the alarms to point out pens that need greater attention. Full article
(This article belongs to the Special Issue Tail Biting in Pigs―Aetiology, Risk Factors and Solutions)
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21 pages, 5127 KB  
Article
Conceptual Approach for Positioning of Fish Guidance Structures Using CFD and Expert Knowledge
by Linus Feigenwinter, David F. Vetsch, Stephan Kammerer, Carl Robert Kriewitz and Robert M. Boes
Sustainability 2019, 11(6), 1646; https://doi.org/10.3390/su11061646 - 19 Mar 2019
Cited by 15 | Viewed by 5477
Abstract
The longitudinal connectivity of many rivers is interrupted by man-made barriers preventing the up- and downstream migration of fishes. For example, dams, weirs, and hydropower plants (HPP) are insuperable obstructions for upstream migration if no special measures like fish passes are put into [...] Read more.
The longitudinal connectivity of many rivers is interrupted by man-made barriers preventing the up- and downstream migration of fishes. For example, dams, weirs, and hydropower plants (HPP) are insuperable obstructions for upstream migration if no special measures like fish passes are put into effect. While upstream fishways have been implemented successfully and are still being optimized, the focus of current research is more and more on effective fish protection and guiding devices for downstream migration. According to current knowledge fish guidance structures (FGS) have a high potential in supporting the downstream migration by leading fishes to a bypass as an alternative to turbine passage. This work presents a structured and straightforward approach for the evaluation of potential locations of FGS combining traditional dimensioning principles with computational fluid dynamics (CFD) and novel findings from etho-hydraulic research. The approach is based on three key aspects: fish fauna, structural conditions, and hydraulic conditions, and includes three assessment criteria, which are used in an iterative process to define potential FGS locations. The hydraulic conditions can be investigated by means of hydrodynamic 3D simulations and evaluated at cross sections of potential FGS positions. Considering fundamentals of fish biology and ethology allows for rating of the flow conditions and thus for a suitability assessment of various locations. The advantage of the proposed procedure is the possibility to assess FGS configurations without implementing the FGS in the numerical model, thus limiting the computational expense. Furthermore, the implementation of various operation conditions is straightforward. The conceptual approach is illustrated and discussed by means of a case study. Full article
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