Search Results (23)

Bats, as members of the order Chiroptera, are vital to ecosystems and serve as reservoirs for numerous microorganisms, some of which can cause zoonotic diseases. Human interactions with bats are increasing due to habitat alterations, making it essential to understand their microbiota, particularly potential pathogens. This study aimed to evaluate the excretion of zoonotic bacteria and protozoa in insectivorous bats from four caves in the provinces of Ragusa, Catania, and Syracuse (Sicily, Southern Italy) using molecular biology tests for zoonotic agents, including Bartonella henselae, Borrelia, Coxiella burnetii, Leptospira, Chlamydia, Rickettsia, Anaplasma, and Piroplasmids. From December 2020 to April 2023, urine, fecal swabs, ocular conjunctival swabs, and oropharyngeal swabs were collected from 149 bats of six species, along with guano samples from the caves. Bartonella henselae DNA was detected in 3 of the 149 tested bats, one ocular conjunctival swab and two oropharyngeal swabs. Chlamydia spp. DNA was detected in a sample of guano, in feces, ocular conjunctival and oropharyngeal swabs of a bat, and in four urine samples. Piroplasmid DNA was detected in 10 of 149 fecal swabs and in 5 of 16 bat ectoparasites. No samples were positive for Leptospira spp., Borrelia spp., Coxiella burnetii, Rickettsia spp., or Anaplasma spp. These findings underscore the importance of multiple sample types in assessing bats as reservoirs for zoonotic pathogens, particularly highlighting their role in transmitting pathogens through various body habitats, including saliva, urine, and ocular excretions. This study highlights the relevance of monitoring bat populations and studying their microbiota to enhance protections for both human and animal health. Full article

The ice stored in caves is a widespread yet neglected cryospheric component. The cold-adapted biodiversity of ice caves has received very little attention from research, despite the potential abundance of endemic troglobiotic and cryophilic species and their consequent sensitivity to the changing climate. In this study, we investigated the invertebrate diversity of two ice caves in Northeastern Italy (Bus delle Taccole and Caverna del Sieson, Veneto Region). During 2022 and 2023, we sampled, using pitfall traps, the invertebrates dwelling at different locations in each cave: the shaft base, an intermediate hall, and the cave bottom. At each cave location, we also collected ice samples, on which we measured the stable isotopes of oxygen and hydrogen (δ¹⁸O, δ²H), and monitored the air temperature with data-loggers. The two caves had different invertebrate communities, both dominated by a combination of troglobiotic and cryophilic taxa. Despite a low taxonomic richness, which was higher at Taccole (15 taxa) than at Sieson (11 taxa), both caves hosted rare/endemic species, four of which are not described yet. At each cave, the ice water isotopic signatures differed among cave locations, suggesting the ice had formed under different climatic conditions, and/or resulted from different frequencies of thawing/freezing events. The occurrence of summer melt at both caves suggests that these unique ecosystems will quickly disappear, along with their specialized and unique biodiversity. Full article

Lions (Panthera leo) play a crucial ecological role in shaping and maintaining fragile ecosystems within Africa. Conservation efforts should focus on genetic variability within wild populations when considering reintroduction attempts. We studied two groups of lions from two conservation sites located in Zambia and Zimbabwe to determine their genetic make-up, information that is usually unknown to the sites. In this study, we analysed 17 specimens for cytb and seven microsatellite markers to ascertain family relationships and genetic diversity previously obtained by observational studies. We then produced a standardised haplogroup phylogeny using all available entire mitogenomes, as well as calculating a revised molecular clock. The modern lion lineage diverged ~151 kya and was divided into two subspecies, both containing three distinct haplogroups. We confirm that Panthera leo persica is not a subspecies, but rather a haplogroup of the northern P.l. leo that exited Africa at least ~31 kya. The progenitor to all lions existed ~1.2 Mya, possibly in SE Africa, and later exited Africa and split into the two cave lion lineages ~175 kya. Species demography is correlated to major climactic events. We now have a detailed phylogeny of lion evolution and an idea of their conservation status given the threat of climate change. Full article

We here provide the first comprehensive analysis and discussion on prey consumed by the European cave salamanders of the genus Speleomantes. Our study stems from the need to shed light on the still unknown foraging behavior adopted by Speleomantes cave salamanders. Starting from the published datasets on gut contents from all Speleomantes species (including hybrids), we here discuss additional information (i.e., species ecology, lower taxonomic level), which were systematically omitted from those data sets. We analyzed a data set consisting of 17,630 records from 49 categories of consumed prey recognized from gut contents of 2060 adults and juveniles Speleomantes. Flying prey accounted for more than 58% of the prey items, while elongated crawling prey accounted for no more than 16% of the diet within a single population. Among the total recognized prey items, only three can be surely ascribed to the group of strictly-cave species (i.e., troglobites), meaning that European cave salamanders mostly forage in surface environment, and therefore represent one of the major drivers of allochthonous organic matter in subterranean environments. Some of the consumed prey seemed to be aquatic, allowing us to hypothesize whether Speleomantes are able to catch prey from a shallow body water. Furthermore, European cave salamanders possess the ability to prey upon taxa characterized by particular anti-predator defenses, while morphological constraints seem to be the most important limit to prey consumption. For each specific case, we provide insights and propose hypotheses concerning the foraging behavior that need to be tested to properly understand the foraging behavior of this cryptic salamanders. Full article

The cave systems of the Neretva River basin in the Dinaric Karst are home to Congeria kusceri, one of the very few known examples of stygobiotic bivalve mollusks, which displays several unique life history traits and adaptations that allowed its adaptation to the subterranean environment. This endemic species is undergoing rapid decline, most likely linked with habitat degradation, which might seriously threaten its survival in the next few decades. Unfortunately, the urgent need for effective conservation efforts is hampered by the lack of effective regulations aimed at preserving remnant populations as well as by our limited knowledge of the biology of this species. Although the precise factors underlying the disappearance of C. kusceri from its type locations are not entirely clear, the alteration of seasonal changes in water temperatures and alkalinity is most likely involved, as these are the main drivers of shell growth, spawning, and the onset and progression of the new gametogenic cycle. While these aspects have so far only been studied using morphological and physiological observations, future conservation efforts would certainly benefit from an integrated multidisciplinary approach. Here, using RNA-sequencing, we provide an overview of the modulation of gene expression recorded in five key tissues (the mantle, gonads, gills, adductor muscle, and digestive gland) between early June and late September. We highlight the presence of markedly tissue-specific responses, with the most dramatic changes affecting the gonads, mantle, and gills. We further identified a drastic switch in the use of energy budgets between the two periods, with evidence of ongoing shell growth and high metabolic activity in the mantle and gills at the early time point, followed by a massive redirection of all available energy to the gonads for the generation of new gamete primordia in early autumn. Full article

Previously described from only fragments of exoskeleton and juvenile specimens, the cave spider genus Troglodiplura (Araneae: Anamidae), endemic to the Nullarbor Plain, is the only troglomorphic member of the infraorder Mygalomorphae recorded from Australia. We investigated the distribution of Troglodiplura in South Australia, collecting and observing the first (intact) mature specimens, widening the number of caves it has been recorded in, and documenting threats to conservation. Phylogenetic analyses support the placement of Troglodiplura as an independent lineage within the subfamily Anaminae (the ‘Troglodiplura group’) and provide unequivocal evidence that populations from apparently isolated cave systems are conspecifics of T. beirutpakbarai Harvey & Rix, 2020, with extremely low or negligible inter-population mitochondrial divergences. This is intriguing evidence for recent or contemporary subterranean dispersal of these large, troglomorphic spiders. Observations of adults and juvenile spiders taken in the natural cave environment, and supported by observations in captivity, revealed the use of crevices within caves as shelters, but no evidence of silk use for burrow construction, contrasting with the typical burrowing behaviours seen in other Anamidae. We identify a range of threats posed to the species and to the fragile cave ecosystem, and provide recommendations for further research to better define the distribution of vulnerable taxa within caves and identify actions needed to protect them. Full article

Pristine environments, such as caves, are unique habitats that are isolated from human activity and are exposed to extreme environmental conditions. These environments are rich sources of microbial diversity, and the microorganisms that thrive in these conditions have developed unique survival skills. One such skill is the biosynthesis of secondary metabolites with potential bioactivities, which provide the organisms with a competitive advantage in these extreme environments. The isolation and characterization of microbial strains from the surfaces of pristine cave environments are important for exploring the biotechnological potential of these organisms. These studies can reveal new products with antibacterial, antifungal, anti-inflammatory, antioxidant, and anticancer activities, among others. In addition, the identification of specific compounds responsible for these biological activities can contribute to the development of new drugs and products for sustainable biotechnological applications. Recent developments in genomics, bioinformatics, chemoinformatics, metabolic engineering, and synthetic biology have opened new possibilities for drug discovery, making the exploration of bacterial secondary metabolites more promising. In recent years, several bacteria with bioactive potential have been described, and several compounds with bioactivity have been identified. These findings are essential for the development of new drugs and products for the benefit of society. This paper discusses the potential of microorganisms found in pristine cave surfaces as a source of new metabolites with bioactivity that could have sustainable biotechnological applications. The authors suggest that more research should be conducted in these environments to better understand the microorganisms and the biosynthesis of these metabolites and to identify new compounds and metabolic pathways that could be of interest for the development of new drugs and products. The aim is to highlight the importance of these habitats as a potential source of new bioactive compounds that could be used for sustainable biotechnological applications. Full article

The trophic niche of a species is one of the fundamental traits of species biology. The ideal trophic niche of a species is realized in the absence of interspecific competition, targeting the most profitable and easy-to-handle food resources. However, when a competitor is present, species adopt different strategies to reduce competition and promote coexistence. In this study, we assessed the potential mechanisms that allow the coexistence of two generalist salamanders: the Italian cave salamander (Speleomantes italicus) and the fire salamander (Salamandra salamandra). We surveyed, in April 2021, a forested area of Emilia-Romagna (Italy) during rainy nights. Analyzing the stomach contents of the captured individuals, we obtained information on the trophic niche of these two sympatric populations. Comparing our results with those of previous studies, we found that the two species did not modify their trophic niche, but that alternative mechanisms allowed their coexistence. Specifically, different prey preferences and predator metabolisms were likely the major factors allowing reduced competition between these two generalist predators. Full article

This research provides bihourly temperature and relative humidity data from ten measuring locations in eight caves from one of the largest contiguous arid karst areas in the world, the Nullarbor Plain in south Australia. The current data span the period from November 2019 to March 2021, and represent the first continuous published monitoring of the subterranean features in this area. The data were recorded using ten TGP-4500 Tinytag Plus 2 self-contained temperature (resolution ±0.01 °C or better with a reading range from −25 °C to +85 °C) and relative humidity (resolution ±3.0% or better with a reading range from 0% to 100%) data loggers and are available in the form of a spreadsheet. The text also describes reported (but only occasional) visits to the caves, so that the data for those particular days and/or hours can be treated as anthropogenically influenced. The data have great potential to provide insight into underground karst processes, air mass movements, hydrogeology, speleothems and (palaeo)climate, current climatic changes, and biology. Full article

Decapod crustaceans are important components of the fauna of marine caves worldwide, yet information on their ecology is still scarce. Mediterranean marine caves are perhaps the best known of the world and may offer paradigms to the students of marine cave decapods from other geographic regions. This review summarizes and updates the existing knowledge about the decapod fauna of Mediterranean marine caves on the basis of a dataset of 76 species from 133 caves in 13 Mediterranean countries. Most species were found occasionally, while 15 species were comparatively frequent (found in at least seven caves). They comprise cryptobiotic and bathyphilic species that only secondarily colonize caves (secondary stygobiosis). Little is known about the population biology of cave decapods, and quantitative data are virtually lacking. The knowledge on Mediterranean marine cave decapods is far from being complete. Future research should focus on filling regional gaps and on the decapod ecological role: getting out at night to feed and resting in caves during daytime, decapods may import organic matter to the cave ecosystem. Some decapod species occurring in caves are protected by law. Ecological interest and the need for conservation initiatives combine to claim for intensifying research on the decapod fauna of the Mediterranean Sea caves. Full article

The Towakkalak System located in the Maros karst of South Sulawesi is currently the richest of Southeast Asia in obligate subterranean species. It comprises several caves and shafts that give access to the subterranean Towakkalak river as well as many unconnected fossil caves, stream sinks, and springs located within its footprint. The total length of the caves linked to the active system is 24,319 m and comprises two of the longest caves of Indonesia, Gua Salukkan Kallang and Gua Tanette. Studies of its fauna began in 1985. There are 10 stygobionts and 26 troglobionts that are known from the system. The smaller adjacent system of Saripa has 6 stygobionts and 18 troglobionts, of which 1 and 3, respectively, are absent from Towakkalak. Like all tropical cave inventories, our dataset has limits due to identification uncertainties, gaps in habitat (waters, guano) and taxonomic coverage (micro-crustaceans, mites), sampling methods (pitfall trapping, Karaman–Chappuis), and problems of ecological assignment. A number of additional species are therefore expected to be found in the future. The Towakkalak and Saripa cave systems are included in the Bantimurung-Bulusaraung National Park and are under efficient protection, but parts of the Maros karst outside the park are under serious threat, mainly from quarrying. Full article

The new entomopathogenic fungus Ophiocordyceps pingbianensis, collected from Southeast China, was described by mitogenomic, morphological, and phylogenetic evidence. The systematic position of O. pingbianensis was determined by phylogenetic analyses based on six nuclear gene (ITS, tef1-α, nrSSU, nrLSU, rpb1 and rpb2) and 14 mitochondrial protein-coding gene (PCGs) (cox1, cox2, cox3, atp6, atp8, atp9, cob, nad1, nad2, nad3, nad4, nad5, nad6 and nad4L) data. Phylogenetic analyses reveal that O. pingbianensis was belonged to the Hirsutella nodulosa clade in the genus Ophiocordyceps of Ophiocordycipiaceae. This fungus exhibits distinctive characteristics which differed from other related Ophiocordyceps species with slender and geminate stromata, monophialidic conidiogenous cells with an inflated awl-shaped base, a twisty and warty phialide neck and a fusiform or oval conidia, as well as being found on a tiger beetle of Coleoptera buried in moss at the cave. The complete mitochondrial genome of O. pingbianensis was a circular DNA molecule 80,359 bp in length, containing 15 PCGs, 24 open reading frames genes (ORFs), 25 transfer RNA genes (tRNAs) and 27 introns. Ophiocordyceps pingbianensis, containing 27 introns, has the second largest mitogenome in Ophiocordycipiaceae and was next to O. sinensis. To our knowledge, this is the first report of the mitogenome from a new entomopathogenic fungus, and thus provides an important foundation for future studies on taxonomy, genetics and evolutionary biology of Ophiocordycipiaceae. Full article

Speleomantes are the only plethodontid salamanders present in Europe. Multiple studies have been performed to investigate the trophic niche of the eight Speleomantes species, but none of these studies included hybrid populations. For the first time, we studied the trophic niche of five Speleomantes hybrid populations. Each population was surveyed twice in 2020, and stomach flushing was performed on each captured salamander; stomach flushing is a harmless technique that allows stomach contents to be inspected. We also assessed the potential divergence in size and body condition between natural and introduced hybrids, and their parental species. Previously collected data on Speleomantes were included to increase the robustness of these analyses. In only 33 out of 134 sampled hybrid Speleomantes we recognized 81 items belonging to 11 prey categories. The frequency of empty stomachs was higher in females and individuals from natural hybrid populations, whereas the largest number of prey was consumed by males. We compared the total length and body condition of 685 adult salamanders belonging to three types of hybrids and three parental (sub)species. Three group of salamanders (one hybrid and two parental species) showed significantly larger size, whereas no difference in body condition was observed. This study provided novel ecological information on Speleomantes hybrid populations. We also provided insights into the potential divergence between hybrids and parental species in terms of size and body condition. We discuss our findings, and formulate several hypotheses that should be tested in the future. Full article

We present 52 new geographic location records for the peracarid crustacean Antromysis cenotensis Creaser, 1936, endemic in cenotes of the Yucatan Peninsula, Mexico. This species is currently considered threatened and, therefore, is protected by Mexican law. These results arise from several expeditions carried out between 2017 and 2020 in 75 locations within the cenote-ring, the interior, and coastal plains of the peninsula. A comprehensive literature review provided 84 geographic location records since the species was described in 1936. A map with 136 geographic location records that better describe the current species distribution is also included. With this information, plus some notes on the ecology of the species, a comprehensive literature and data review, and a brief analysis regarding the possible factors associated with the confirmed absence of the species in some locations in the state of Yucatan, we provide a brief and condensed summary of the actual knowledge on this particular species. The data in Darwin Core format can be retrieved in Zenodo. Full article

A key challenge in contemporary biology is connecting genotypic variation to phenotypic diversity. Quantitative genetics provides a powerful technique for identifying regions of the genome that covary with phenotypic variation. Here, we present a quantitative trait loci (QTL) analysis of a natural freshwater fish system, Astyanax mexicanus, that harbors two morphs corresponding to a cave and surface fish. Following their divergence ~500 Kya, cavefish have adapted to the extreme pressures of the subterranean biome. As a consequence, cavefish have lost numerous features, but evolved gains for a variety of constructive features including behavior. Prior work found that sensory tissues (neuromasts) present in the “eye orbit” region of the skull associate with sensitivity to vibrations in water. This augmented sensation is believed to facilitate foraging behavior in the complete darkness of a cave, and may impact on evolved lateral swimming preference. To this point, however, it has remained unclear how morphological variation integrates with behavioral variation through heritable factors. Using a QTL approach, we discovered the genetic architecture of neuromasts present in the eye orbit region, demonstrating that this feature is under genetic control. Interestingly, linked loci were asymmetric–signals were detected using only data collected from the right, but not left, side of the face. This finding may explain enhanced sensitivity and/or feedback of water movements mediating a lateral swimming preference. The locus we discovered based on neuromast position maps near established QTL for eye size and a facial bone morphology, raising the intriguing possibility that eye loss, sensory expansion, and the cranial skeleton may be integrated for evolving adaptive behaviors. Thus, this work will further our understanding of the functional consequence of key loci that influence the evolutionary origin of changes impacting morphology, behavior, and adaptation. Full article