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14 pages, 654 KB  
Article
Effects of Natural Fermentation Time on Chemical Composition, Antioxidant Activities, and Phenolic Profile of Cassava Root Flour
by Oluwaseun Peter Bamidele
Appl. Sci. 2025, 15(15), 8494; https://doi.org/10.3390/app15158494 - 31 Jul 2025
Viewed by 2740
Abstract
This study aimed to determine the impact of natural fermentation time on the chemical composition and antioxidant activities of cassava flour. Samples of flour were fermented for intervals of 12, 24, and 48 h and compared with the control (0 h). The results [...] Read more.
This study aimed to determine the impact of natural fermentation time on the chemical composition and antioxidant activities of cassava flour. Samples of flour were fermented for intervals of 12, 24, and 48 h and compared with the control (0 h). The results indicated clear differences in the chemical composition of these samples. The pH value was reduced, TTA increased, and TSS decreased. This is due to the action of lactic acid bacteria during fermentation. The TPC value also increased with fermentation time, achieving 2.95 mg GAE/g after 48 h, compared to 1.35 mg GAE/g initially. Antioxidant activities improved significantly; total antioxidant capacity surged from 23.50 µmol TE/g to 69.81 µmol TE/g over the 48 h fermentation period, based on ABTS, DPPH, and FRAP assays. Protein content also improved significantly, increasing from 1.82% to 3.10%, while the hydrogen cyanide content declined from 25.14 mg/100 g to 5.34 mg/100 g, signifying reduced nutritional risk. An increase in minerals was also noted, with calcium showing the highest concentration of 41.35 mg/100 g after 48 h of fermentation. These findings demonstrate the effectiveness of fermenting cassava flour by enhancing its chemical composition and antioxidant properties while lowering antinutrients, which improves its value in functional foods. Full article
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17 pages, 5004 KB  
Article
Local Emissions Drive Summer PM2.5 Pollution Under Adverse Meteorological Conditions: A Quantitative Case Study in Suzhou, Yangtze River Delta
by Minyan Wu, Ningning Cai, Jiong Fang, Ling Huang, Xurong Shi, Yezheng Wu, Li Li and Hongbing Qin
Atmosphere 2025, 16(7), 867; https://doi.org/10.3390/atmos16070867 - 16 Jul 2025
Cited by 1 | Viewed by 1260
Abstract
Accurately identifying the sources of fine particulate matter (PM2.5) pollution is crucial for pollution control and public health protection. Taking the PM2.5 pollution event that occurred in Suzhou in June 2023 as a typical case, this study analyzed the characteristics [...] Read more.
Accurately identifying the sources of fine particulate matter (PM2.5) pollution is crucial for pollution control and public health protection. Taking the PM2.5 pollution event that occurred in Suzhou in June 2023 as a typical case, this study analyzed the characteristics and components of PM2.5, and quantified the contributions of meteorological conditions, regional transport, and local emissions to the summertime PM2.5 surge in a typical Yangtze River Delta (YRD) city. Chemical composition analysis highlighted a sharp increase in nitrate ions (NO3, contributing up to 49% during peak pollution), with calcium ion (Ca2+) and sulfate ion (SO42−) concentrations rising to 2 times and 7.5 times those of clean periods, respectively. Results from the random forest model demonstrated that emission sources (74%) dominated this pollution episode, significantly surpassing the meteorological contribution (26%). The Weather Research and Forecasting model combined with the Community Multiscale Air Quality model (WRF–CMAQ) further revealed that local emissions contributed the most to PM2.5 concentrations in Suzhou (46.3%), while external transport primarily originated from upwind cities such as Shanghai and Jiaxing. The findings indicate synergistic effects from dust sources, industrial emissions, and mobile sources. Validation using electricity consumption and key enterprise emission data confirmed that intensive local industrial activities exacerbated PM2.5 accumulation. Recommendations include strengthening regulations on local industrial and mobile source emissions, and enhancing regional joint prevention and control mechanisms to mitigate cross-boundary transport impacts. Full article
(This article belongs to the Section Air Quality)
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34 pages, 2009 KB  
Review
The Multifaceted Role of Calcium Signaling in Regulated Necrosis
by Eric Perez-Rivera, Claudia Plasencia and Uris Ros
Biomolecules 2025, 15(6), 854; https://doi.org/10.3390/biom15060854 - 11 Jun 2025
Cited by 1 | Viewed by 4126
Abstract
Calcium is a versatile ion that regulates diverse intracellular processes, including cell death and survival, cytokine and chemokine production, lipid scrambling, and immune cell activation. In regulated necrosis, an early increase in cytosolic calcium is a hallmark of pathways such as pyroptosis, necroptosis, [...] Read more.
Calcium is a versatile ion that regulates diverse intracellular processes, including cell death and survival, cytokine and chemokine production, lipid scrambling, and immune cell activation. In regulated necrosis, an early increase in cytosolic calcium is a hallmark of pathways such as pyroptosis, necroptosis, and ferroptosis, and resembles the calcium surge triggered by pore-forming toxins. The complexity of calcium signaling is orchestrated by specialized channels in various cellular compartments and calcium-binding proteins that respond to localized calcium concentrations. However, the coordination of this intricate code during regulated necrosis and its connections to other calcium-driven processes remains poorly understood. This review provides an overview of the molecular mechanisms of calcium signaling in regulated necrosis, analyzing parallels with pore-forming toxin-mediated membrane damage to uncover nodes that are shared by these seemingly independent pathways. We also discuss advanced techniques for studying calcium dynamics, with high precision, that can be applied to study regulated necrosis. Calcium signaling emerges as a central hub where necrotic cell death pathways converge, shaping the unique signatures of dying cells and influencing their communication with the immune system. This integrated perspective highlights the complex and multifaceted role of calcium in cells and its implications for fundamental cellular processes. Full article
(This article belongs to the Special Issue Necrotic Cell Death Mechanisms and Therapies)
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2048 KB  
Proceeding Paper
Polysaccharide-Based Composite Material for Improved Food Packaging
by Khushbakht Ali Khan, Khudija Khan, Muhammad Hassan Lakhesar, Muhammad Waqas, Tauseef Ahmed, Ali Turab Jafry, Asim Yaqub, Huma Ajab and Shahid Ali Khan
Mater. Proc. 2025, 23(1), 15; https://doi.org/10.3390/materproc2025023015 - 8 Jun 2025
Viewed by 371
Abstract
A gradual surge in the population on Earth has increased the demand for food. Various synthetic materials have been used for food packaging for a long time. These materials are contaminating our environment and disrupting human life and that of other species. This [...] Read more.
A gradual surge in the population on Earth has increased the demand for food. Various synthetic materials have been used for food packaging for a long time. These materials are contaminating our environment and disrupting human life and that of other species. This study was conducted to minimize the impact of the pollution caused by using plastics for conventional packaging. A green approach to synthesizing packaging material that prevents food contamination with improved mechanical properties was adopted. Firstly, extracts were obtained from grapes and tomatoes and dissolved into four different solvents, i.e., de-ionized water, dichloromethane, ethyl acetate, and n-hexane. Three different extract solutions were made in de-ionized water, varying the fraction of the extract and de-ionized water. The extracts were then tested for the presence of various phytochemicals. The solutions were then combined with cyclodextrin, starch, alginate, and polyvinyl alcohol, all of which are biodegradable, non-cytotoxic, and pocket-friendly. Calcium chloride was also added because it acts as a firming agent and a desiccant. This resulted in the formation of a total of six membranes with four different solvents. These membranes had varying degrees of biodegradability and antibacterial properties. Various phytochemicals, such as saponins, flavonoids, terpenoids, carotenoids, tannins, phenols, and steroids, were found in the fruit extracts. These phytochemicals act as anti-microbial and anti-fungal agents. Out of the six different membranes that were synthesized, the membrane with a 7:3 composition of crude extract to de-ionized water showed the best results for use as a packaging material, as it showed the best antibacterial properties and good reported biodegradability. The FTIR results for this membrane showed bands at around 3500 cm−1, indicating the presence of -OH and -NH functionality since these bands overlap and cannot be distinguished at this position. The shoulder band indicates the presence of carboxylic acid -OH. Integrating biopolymers with fruit extracts enhances the nutritional value of food and provides an eco-friendly and cost-effective approach to packaging material synthesis. The synthesized membranes are cost-effective as they contain fruit extracts from grapes and tomatoes; starch; and cyclodextrin. The extracts obtained from the fruits were inexpensive, as 300 mL of extract cost around 300 Rs. The synthesized membranes had functional advantages such as biodegradability and providing an enhanced shelf life to food products. Hence, they reduce the losses caused by food spoilage. Another driver of their cost effectiveness is that they can reduce waste disposal costs on the one hand and environmental pollution on the other hand. Full article
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6 pages, 148 KB  
Case Report
Shock and Awe: The Tactical Trade-Offs of Impella® Versus Intra-Aortic Balloon Pump in Takotsubo Cardiomyopathy
by Ajay Saraf and Amit Goyal
Reports 2025, 8(2), 43; https://doi.org/10.3390/reports8020043 - 2 Apr 2025
Viewed by 1387
Abstract
Background and Clinical Significance: Takotsubo cardiomyopathy (TCM), an acute stress-induced left ventricular dysfunction, stems from catecholaminergic surges leading to transient myocyte stunning, calcium overload, and microvascular dysregulation. Although most cases resolve spontaneously, roughly 10% deteriorate into fulminant cardiogenic shock, warranting mechanical circulatory support [...] Read more.
Background and Clinical Significance: Takotsubo cardiomyopathy (TCM), an acute stress-induced left ventricular dysfunction, stems from catecholaminergic surges leading to transient myocyte stunning, calcium overload, and microvascular dysregulation. Although most cases resolve spontaneously, roughly 10% deteriorate into fulminant cardiogenic shock, warranting mechanical circulatory support (MCS). Impella® provides direct transvalvular LV unloading but carries elevated risks of hemolysis, vascular compromise, and thrombogenicity. Conversely, the intra-aortic balloon pump (IABP) enhances diastolic coronary perfusion and marginally reduces afterload via counterpulsation, albeit with less potent LV decompression. Optimal MCS selection in TCM-associated shock therefore hinges on balancing hemodynamic benefits against procedural morbidity. Case Presentation: A 72-year-old female with coronary artery disease, paroxysmal atrial fibrillation (status post–left atrial appendage occlusion), and stage 3 chronic kidney disease presented with anterior ST-segment elevations (V2–V4) and troponin I >1000 ng/L, progressing rapidly to cardiogenic shock and respiratory failure. Coronary angiography revealed mild luminal irregularities, while echocardiography demonstrated severely reduced ejection fraction (5–10%) with characteristic apical ballooning. Refractory elevations in pulmonary capillary wedge pressure, despite escalating inotropes and vasopressors, prompted IABP insertion for partial LV offloading. Over one week, her ejection fraction improved to 35%, facilitating weaning from pressor support, extubation, and discharge on guideline-directed medical therapy. Conclusions: In TCM complicated by shock, meticulous MCS selection is paramount. Although Impella confers more robust unloading, heightened device-related complications may be unjustified in a largely reversible disease. IABP can sufficiently stabilize hemodynamics, enable myocardial recovery, and mitigate morbidity, underscoring the importance of individualized decision-making in TCM-related shock. Importantly, no trial has shown that MCS confers a proven long-term mortality benefit beyond initial hemodynamic rescue. Full article
(This article belongs to the Section Cardiology/Cardiovascular Medicine)
20 pages, 7893 KB  
Article
Simulation of Control Process of Fluid Boundary Layer on Deposition of Travertine Particles in Huanglong Landscape Water Based on Computational Fluid Dynamics Software (CFD)
by Xinze Liu, Wenhao Gao, Yang Zuo, Dong Sun, Weizhen Zhang, Zhipeng Zhang, Shupu Liu, Jianxing Dong, Shikuan Wang, Hao Xu, Hongwei Chen and Mengyu Xu
Water 2025, 17(5), 638; https://doi.org/10.3390/w17050638 - 22 Feb 2025
Cited by 2 | Viewed by 1070
Abstract
This research explores the distribution, transport, and deposition of calcium carbonate particles in the colorful pools of the Huanglong area under varying hydrodynamic conditions. The study employs Particle Image Velocimetry (PIV) for real-time measurements of flow field velocity and computational fluid dynamics (CFD) [...] Read more.
This research explores the distribution, transport, and deposition of calcium carbonate particles in the colorful pools of the Huanglong area under varying hydrodynamic conditions. The study employs Particle Image Velocimetry (PIV) for real-time measurements of flow field velocity and computational fluid dynamics (CFD) simulations to analyze particle behavior. The findings reveal that under horizontal flow conditions, the peak concentration of calcium carbonate escalated to 1.06%, representing a 6% surge compared to the inlet concentration. Significantly, particle aggregation and settling were predominantly noted at the bottom right of the flow channel, where the flow boundary layer is most pronounced. In the context of inclined surfaces equipped with a baffle, a substantial rise in calcium carbonate concentrations was detected at the channel’s bottom right and behind the baffle, particularly in regions characterized by reduced flow velocities. These low-velocity areas, along with the interaction of the boundary layer and low-speed vortices, led to a decrease in particle velocities, thereby enhancing deposition. The highest concentrations of calcium carbonate particles were found in regions characterized by thicker boundary layers, particularly in locations before and after the baffle. Using the Discrete Phase Model (DPM 22), the study tracked the trajectories of 2424 particles, of which 2415 exited the computational channel and nine underwent deposition. The overall deposition rate was measured at 0.371%, with calcium carbonate deposition rates ranging from 4.06 mm/a to 81.7 mm/a, closely matching field observations. These findings provide valuable insights into the dynamics of particle transport in aquatic environments and elucidate the factors influencing sedimentation processes. Full article
(This article belongs to the Special Issue Hydrodynamic Science Experiments and Simulations)
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16 pages, 4966 KB  
Article
Polyetheretherketone Double Functionalization with Bioactive Peptides Improves Human Osteoblast Response
by Leonardo Cassari, Cristian Balducci, Grazia M. L. Messina, Giovanna Iucci, Chiara Battocchio, Federica Bertelà, Giovanni Lucchetta, Trevor Coward, Lucy Di Silvio, Giovanni Marletta, Annj Zamuner, Paola Brun and Monica Dettin
Biomimetics 2024, 9(12), 767; https://doi.org/10.3390/biomimetics9120767 - 17 Dec 2024
Cited by 3 | Viewed by 1552
Abstract
In recent years, the demand for orthopedic implants has surged due to increased life expectancy, necessitating the need for materials that better mimic the biomechanical properties of human bone. Traditional metal implants, despite their mechanical superiority and biocompatibility, often face challenges such as [...] Read more.
In recent years, the demand for orthopedic implants has surged due to increased life expectancy, necessitating the need for materials that better mimic the biomechanical properties of human bone. Traditional metal implants, despite their mechanical superiority and biocompatibility, often face challenges such as mismatched elastic modulus and ion release, leading to complications and implant failures. Polyetheretherketone (PEEK), a semi-crystalline polymer with an aromatic backbone, presents a promising alternative due to its adjustable elastic modulus and compatibility with bone tissue. This study explores the functionalization of sandblasted 3D-printed PEEK disks with the bioactive peptides Aoa-GBMP1α and Aoa-EAK to enhance human osteoblast response. Aoa-GBMP1α reproduces 48–69 trait of Bone Morphogenetic Protein 2 (BMP-2), whereas Aoa-EAK is a self-assembling peptide mimicking extracellular matrix (ECM) fibrous structure. Superficial characterization included X-ray photoelectron spectroscopy (XPS), white light interferometer analysis, static water contact angle (S-WCA), and force spectroscopy (AFM-FS). Biological assays demonstrated a significant increase in human osteoblast (HOB) proliferation, calcium deposition, and expression of osteogenic genes (RUNX2, SPP1, and VTN) on functionalized PEEK compared to non-functionalized controls. The findings suggest that dual peptide-functionalized PEEK holds significant potential for advancing orthopedic implant technology. Full article
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11 pages, 1083 KB  
Article
Energy Balance and Dietary Intake in Young Rugby Players during a Pre-Season Micro-Cycle: A Cluster Analysis
by Maher Souabni, Giovanna C Del Sordo, Freddy Maso, Paul Peyrel, Clément Maviel, Fabrice Vercruyssen, Pascale Duché and Oussama Saidi
Nutrients 2024, 16(17), 2863; https://doi.org/10.3390/nu16172863 - 27 Aug 2024
Cited by 2 | Viewed by 2608
Abstract
Rugby players must develop excellent levels of conditioning during adolescence. However, this pivotal period of life is also characterized by a surge in biological growth, which further increases the energy and nutritional requirements of this population. This study examined within-individual differences in energy [...] Read more.
Rugby players must develop excellent levels of conditioning during adolescence. However, this pivotal period of life is also characterized by a surge in biological growth, which further increases the energy and nutritional requirements of this population. This study examined within-individual differences in energy intake (EI) and energy balance (EB) of 46 young rugby players during a pre-season micro-cycle. Two clusters were identified with significantly different characteristics and EB states, suggesting that young rugby players adjust their EI to match their body composition goals. The first cluster is characterized by players with a low body fat% (12.87 ± 2.53). They had a positive EB (330 ± 517 kcal), suggesting a goal of increasing muscle mass. Conversely, the second cluster is characterized by a higher body fat% (23.1 ± 1.6, p < 0.005) and reported a negative, lower EB (−683 ± 425 kcal, p < 0.005), suggesting a goal focused on reducing fat mass. Although our study provides more optimistic results than previous ones regarding the high risk of inadequate EI in young rugby players, we emphasize the importance of rigorous nutritional support, especially for players aiming to lose weight, to avoid severe caloric restriction, as well as the downstream effects of such practices on their nutritional status, given the higher risk of macro- (e.g., CHO < 6 g/kg/d) and micronutrient (e.g., iron < 11 mg/d, calcium < 1300 mg/d, vitamin D < 5 mg/d) deficiencies. Full article
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15 pages, 3726 KB  
Article
Advancements in Heavy Metal Stabilization: A Comparative Study on Zinc Immobilization in Glass-Portland Cement Binders
by Abdelhadi Bouchikhi, Amine el Mahdi Safhi, Walid Maherzi, Yannick Mamindy-Pajany, Wolfgang Kunther, Mahfoud Benzerzour and Nor-Edine Abriak
Materials 2024, 17(12), 2867; https://doi.org/10.3390/ma17122867 - 12 Jun 2024
Cited by 1 | Viewed by 1893
Abstract
Recent literature has exhibited a growing interest in the utilization of ground glass powder (GP) as a supplementary cementitious material (SCM). Yet, the application of SCMs in stabilizing heavy metallic and metalloid elements remains underexplored. This research zeroes in on zinc stabilization using [...] Read more.
Recent literature has exhibited a growing interest in the utilization of ground glass powder (GP) as a supplementary cementitious material (SCM). Yet, the application of SCMs in stabilizing heavy metallic and metalloid elements remains underexplored. This research zeroes in on zinc stabilization using a binder amalgam of GP and ordinary Portland cement (OPC). This study juxtaposes the stability of zinc in a recomposed binder consisting of 30% GP and 70% OPC (denoted as 30GP-M) against a reference binder of 100% CEM I 52.5 N (labeled reference mortar, RM) across curing intervals of 1, 28, and 90 days. Remarkably, the findings indicate a heightened kinetic immobilization of Zn at 90 days in the presence of GP—surging up to 40% in contrast to RM. Advanced microstructural analyses delineate the stabilization locales for Zn, including on the periphery of hydrated C3S particles (Zn–C3S), within GP-reactive sites (Si*–O–Zn), and amid C–S–H gel structures, i.e., (C/Zn)–S–H. A matrix with 30% GP bolsters the hydration process of C3S vis-à-vis the RM matrix. Probing deeper, the microstructural characterization underscores GP’s prowess in Zn immobilization, particularly at the interaction zone with the paste. In the Zn milieu, it was discerning a transmutation—some products born from the GP–Portlandite reaction morph into GP–calcium–zincate. Full article
(This article belongs to the Special Issue Functional Cement-Based Composites for Civil Engineering (Volume II))
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22 pages, 2854 KB  
Article
Pollinator Diversity and Phenological Interplay: Exploring Mineral, Hormonal, Sugar, and Vitamin Contents in Vitis vinifera L. cv Bozcaada Çavuşu
by Ozkan Kaya, Hava Delavar, Fadime Ates, Muge Sahin, Nurhan Keskin, Turhan Yilmaz, Metin Turan and Harlene Hatterman-Valenti
Plants 2024, 13(12), 1612; https://doi.org/10.3390/plants13121612 - 11 Jun 2024
Cited by 1 | Viewed by 1913
Abstract
Unraveling the intricate physiological and biochemical intricacies associated with female dominance in grape berries across diverse developmental stages is imperative for optimizing grape production and ensuring the attainment of high-quality yields. This study conducted a thorough analysis of grape berries across phenological stages [...] Read more.
Unraveling the intricate physiological and biochemical intricacies associated with female dominance in grape berries across diverse developmental stages is imperative for optimizing grape production and ensuring the attainment of high-quality yields. This study conducted a thorough analysis of grape berries across phenological stages (BBCH-79, BBCH-81, BBCH-89) and cultivars. At BBCH-89, Bozcaada Çavuşu*Vasilâki demonstrated the highest berry weight and total soluble solids (TSS) levels, emphasizing its enological potential. Acidity peaked at BBCH-79 (28.16) and declined at BBCH-89 (6.11), signaling a shift towards lower acidity in later stages. Bozcaada Çavuşu*Vasilâki consistently showed the highest maturity index (MI). Mineral content variations were observed across nitrogen (N), calcium (Ca), potassium (K), phosphorus (P), magnesium (Mg), sulfur (S), iron (Fe), manganese (Mn), boron (B), zinc (Zn), and copper (Cu), with Bozcaada Çavuşu*Vasilâki often having the highest concentrations, particularly in potassium, calcium, and boron. Hormonal analysis revealed a significant surge in concentrations at BBCH-89, with Bozcaada Çavuşu*Vasilâki standing out. Notably, Indole-3-acetic acid (IAA) concentrations increased by 106%, and abscisic acid (ABA) levels peaked at BBCH-79 with a 38% increase in Bozcaada Çavuşu*Kuntra. Sugar content analysis showed variations in fructose, glucose, sucrose, rhamnose, xylose, galactose, and arabinose levels across sampling times and cultivars. Bozcaada Çavuşu*Vasilâki consistently exhibited higher sugar levels, especially at BBCH-81 and BBCH-89. Vitamin concentrations varied temporally and among cultivars, with BBCH-89 displaying the highest vitamin A concentration (6.24 mg/100 g FW), and Bozcaada Çavuşu*Vasilâki often exhibiting maximum values for vitamin B1, B2, B6, and C. Further research and targeted cultivation practices focusing on the unique attributes of Bozcaada Çavuşu*Vasilâki could enhance grape production efficiency, emphasizing its potential contribution to achieving consistently high-quality yields across various phenological stages. Full article
(This article belongs to the Special Issue Plant Reproduction and Embryonic Development)
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26 pages, 1571 KB  
Review
Optogenetics in Alzheimer’s Disease: Focus on Astrocytes
by Elena Mitroshina, Elizaveta Kalinina and Maria Vedunova
Antioxidants 2023, 12(10), 1856; https://doi.org/10.3390/antiox12101856 - 13 Oct 2023
Cited by 7 | Viewed by 4951
Abstract
Alzheimer’s disease (AD) is the most common form of dementia, resulting in disability and mortality. The global incidence of AD is consistently surging. Although numerous therapeutic agents with promising potential have been developed, none have successfully treated AD to date. Consequently, the pursuit [...] Read more.
Alzheimer’s disease (AD) is the most common form of dementia, resulting in disability and mortality. The global incidence of AD is consistently surging. Although numerous therapeutic agents with promising potential have been developed, none have successfully treated AD to date. Consequently, the pursuit of novel methodologies to address neurodegenerative processes in AD remains a paramount endeavor. A particularly promising avenue in this search is optogenetics, enabling the manipulation of neuronal activity. In recent years, research attention has pivoted from neurons to glial cells. This review aims to consider the potential of the optogenetic correction of astrocyte metabolism as a promising strategy for correcting AD-related disorders. The initial segment of the review centers on the role of astrocytes in the genesis of neurodegeneration. Astrocytes have been implicated in several pathological processes associated with AD, encompassing the clearance of β-amyloid, neuroinflammation, excitotoxicity, oxidative stress, and lipid metabolism (along with a critical role in apolipoprotein E function). The effect of astrocyte–neuronal interactions will also be scrutinized. Furthermore, the review delves into a number of studies indicating that changes in cellular calcium (Ca2+) signaling are one of the causes of neurodegeneration. The review’s latter section presents insights into the application of various optogenetic tools to manipulate astrocytic function as a means to counteract neurodegenerative changes. Full article
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23 pages, 10509 KB  
Article
Transcriptomic Analysis of the Response of Susceptible and Resistant Bitter Melon (Momordica charantia L.) to Powdery Mildew Infection Revealing Complex Resistance via Multiple Signaling Pathways
by Xuanyu Chen, Kaixi Zou, Xuzhen Li, Feifan Chen, Yuyu Cheng, Shanming Li, Libo Tian and Sang Shang
Int. J. Mol. Sci. 2023, 24(18), 14262; https://doi.org/10.3390/ijms241814262 - 19 Sep 2023
Cited by 5 | Viewed by 2871
Abstract
The challenge of mitigating the decline in both yield and fruit quality due to the intrusion of powdery mildew (PM) fungus looms as a pivotal concern in the domain of bitter melon cultivation. Yet, the intricate mechanisms that underlie resistance against this pathogen [...] Read more.
The challenge of mitigating the decline in both yield and fruit quality due to the intrusion of powdery mildew (PM) fungus looms as a pivotal concern in the domain of bitter melon cultivation. Yet, the intricate mechanisms that underlie resistance against this pathogen remain inscrutable for the vast majority of bitter melon variants. In this inquiry, we delve deeply into the intricate spectrum of physiological variations and transcriptomic fluctuations intrinsic to the PM-resistant strain identified as ‘04-17-4’ (R), drawing a sharp contrast with the PM-susceptible counterpart, designated as ‘25-15’ (S), throughout the encounter with the pathogenic agent Podosphaera xanthii. In the face of the challenge presented by P. xanthii, the robust cultivar displays an extraordinary capacity to prolong the initiation of the pathogen’s primary growth stage. The comprehensive exploration culminates in the discernment of 6635 and 6954 differentially expressed genes (DEGs) in R and S strains, respectively. Clarification through the lens of enrichment analyses reveals a prevalence of enriched DEGs in pathways interconnected with phenylpropanoid biosynthesis, the interaction of plants with pathogens, and the signaling of plant hormones. Significantly, in the scope of the R variant, DEGs implicated in the pathways of plant-pathogen interaction phenylpropanoid biosynthesis, encompassing components such as calcium-binding proteins, calmodulin, and phenylalanine ammonia-lyase, conspicuously exhibit an escalated tendency upon the encounter with P. xanthii infection. Simultaneously, the genes governing the synthesis and transduction of SA undergo a marked surge in activation, while their counterparts in the JA signaling pathway experience inhibition following infection. These observations underscore the pivotal role played by SA/JA signaling cascades in choreographing the mechanism of resistance against P. xanthii in the R variant. Moreover, the recognition of 40 P. xanthii-inducible genes, encompassing elements such as pathogenesis-related proteins, calmodulin, WRKY transcription factors, and Downy mildew resistant 6, assumes pronounced significance as they emerge as pivotal contenders in the domain of disease control. The zenith of this study harmonizes multiple analytical paradigms, thus capturing latent molecular participants and yielding seminal resources crucial for the advancement of PM-resistant bitter melon cultivars. Full article
(This article belongs to the Section Molecular Plant Sciences)
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17 pages, 2008 KB  
Review
Calcium, Phosphorus and Magnesium Abnormalities Associated with COVID-19 Infection, and Beyond
by Lucreția Anghel, Corina Manole, Aurel Nechita, Alin Laurențiu Tatu, Bogdan Ioan Ștefănescu, Luiza Nechita, Camelia Bușilă, Pușica Zainea, Liliana Baroiu and Carmina Liana Mușat
Biomedicines 2023, 11(9), 2362; https://doi.org/10.3390/biomedicines11092362 - 23 Aug 2023
Cited by 11 | Viewed by 6543
Abstract
The coronavirus disease (COVID-19) pandemic caused by the novel coronavirus SARS-CoV-2 has had a profound impact on global health, leading to a surge in research to better understand the pathophysiology of the disease. Among the various aspects under investigation, disruptions in mineral homeostasis [...] Read more.
The coronavirus disease (COVID-19) pandemic caused by the novel coronavirus SARS-CoV-2 has had a profound impact on global health, leading to a surge in research to better understand the pathophysiology of the disease. Among the various aspects under investigation, disruptions in mineral homeostasis have emerged as a critical area of interest. This review aims to provide an overview of the current evidence linking calcium, phosphorus and magnesium abnormalities with COVID-19 infection and explores the potential implications beyond the acute phase of the disease. Beyond the acute phase of COVID-19, evidence suggests a potential impact of these mineral abnormalities on long-term health outcomes. Persistent alterations in calcium, phosphorus and magnesium levels have been linked to increased cardiovascular risk, skeletal complications and metabolic disorders, warranting continuous monitoring and management in post-COVID-19 patients. Full article
(This article belongs to the Section Microbiology in Human Health and Disease)
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15 pages, 4153 KB  
Article
Comparative Transcriptome Analyses of Leg Muscle during Early Growth between Geese (Anser cygnoides) Breeds Differing in Body Size Characteristics
by Jun Tang, Hongjia Ouyang, Xiaomei Chen, Danli Jiang, Yunbo Tian, Yunmao Huang and Xu Shen
Genes 2023, 14(5), 1048; https://doi.org/10.3390/genes14051048 - 7 May 2023
Cited by 14 | Viewed by 2669
Abstract
Goose is an important poultry commonly raised for meat. The early growth performance of geese significantly influences their market weight and slaughter weight, affecting the poultry industry’s economic benefits. To identify the growth surge between the Shitou goose and the Wuzong goose, we [...] Read more.
Goose is an important poultry commonly raised for meat. The early growth performance of geese significantly influences their market weight and slaughter weight, affecting the poultry industry’s economic benefits. To identify the growth surge between the Shitou goose and the Wuzong goose, we collected the early growth body traits from 0 to 12 weeks. In addition, we investigated the transcriptomic changes in leg muscles at the high growth speed period to reveal the difference between the two geese breeds. We also estimated the growth curve parameters under three models, including the logistic, von Bertalanffy, and Gompertz models. The results showed that except for body length and keel length, the best-fitting model between the body weight and body size of the Shitou and Wuzong was the logistic model. The growth turning points of Shitou and Wuzong were 5.954 and 4.944 weeks, respectively, and the turning point of their body weight was 1459.01 g and 478.54 g, respectively. Growth surge occurred at 2–9 weeks in Shitou goose and at 1–7 weeks in Wuzong goose. The body size traits of the Shitou goose and Wuzong goose showed a trend of rapid growth in the early stage and slow growth in the later stage, and the Shitou goose growth was higher than the Wuzong goose. For transcriptome sequencing, a total of 87 differentially expressed genes (DEGs) were identified with a fold change ≥ 2 and a false discovery rate < 0.05. Many DEGs have a potential function for growth, such as CXCL12, SSTR4, FABP5, SLC2A1, MYLK4, and EIF4E3. KEGG pathway analysis identified that some DEGs were significantly enriched in the calcium signaling pathway, which may promote muscle growth. The gene–gene interaction network of DEGs was mainly related to the transmission of cell signals and substances, hematological system development, and functions. This study can provide theoretical guidance for the production and breeding management of the Shitou goose and Wuzong goose and help reveal the genetic mechanisms underlying diverse body sizes between two goose breeds. Full article
(This article belongs to the Special Issue Poultry Breeding: Genetics and Genomics)
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Review
Analytical Methods for Oxalate Quantification: The Ubiquitous Organic Anion
by Bryan Misiewicz, Donald Mencer, William Terzaghi and Adam L. VanWert
Molecules 2023, 28(7), 3206; https://doi.org/10.3390/molecules28073206 - 4 Apr 2023
Cited by 14 | Viewed by 9366
Abstract
Oxalate is a divalent organic anion that affects many biological and commercial processes. It is derived from plant sources, such as spinach, rhubarb, tea, cacao, nuts, and beans, and therefore is commonly found in raw or processed food products. Oxalate can also be [...] Read more.
Oxalate is a divalent organic anion that affects many biological and commercial processes. It is derived from plant sources, such as spinach, rhubarb, tea, cacao, nuts, and beans, and therefore is commonly found in raw or processed food products. Oxalate can also be made endogenously by humans and other mammals as a byproduct of hepatic enzymatic reactions. It is theorized that plants use oxalate to store calcium and protect against herbivory. Clinically, oxalate is best known to be a major component of kidney stones, which commonly contain calcium oxalate crystals. Oxalate can induce an inflammatory response that decreases the immune system’s ability to remove renal crystals. When formulated with platinum as oxaliplatin (an anticancer drug), oxalate has been proposed to cause neurotoxicity and nerve pain. There are many sectors of industry that are hampered by oxalate, and others that depend on it. For example, calcium oxalate is troublesome in the pulp industry and the alumina industry as it deposits on machinery. On the other hand, oxalate is a common active component of rust removal and cleaning products. Due to its ubiquity, there is interest in developing efficient methods to quantify oxalate. Over the past four decades, many diverse methods have been reported. These approaches include electrochemical detection, liquid chromatography or gas chromatography coupled with mass spectrometry, enzymatic degradation of oxalate with oxalate oxidase and detection of hydrogen peroxide produced, and indicator displacement-based methods employing fluorescent or UV light-absorbing compounds. Enhancements in sensitivity have been reported for both electrochemical and mass-spectrometry-based methods as recently as this year. Indicator-based methods have realized a surge in interest that continues to date. The diversity of these approaches, in terms of instrumentation, sample preparation, and sensitivity, has made it clear that no single method will work best for every purpose. This review describes the strengths and limitations of each method, and may serve as a reference for investigators to decide which approach is most suitable for their work. Full article
(This article belongs to the Section Analytical Chemistry)
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