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Keywords = axon pruning

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15 pages, 2573 KiB  
Article
Hysteresis in Neuron Models with Adapting Feedback Synapses
by Sebastian Thomas Lynch and Stephen Lynch
AppliedMath 2025, 5(2), 70; https://doi.org/10.3390/appliedmath5020070 - 13 Jun 2025
Viewed by 963
Abstract
Despite its significance, hysteresis remains underrepresented in mainstream models of plasticity. In this work, we propose a novel framework that explicitly models hysteresis in simple one- and two-neuron models. Our models capture key feedback-dependent phenomena such as bistability, multistability, periodicity, quasi-periodicity, and chaos, [...] Read more.
Despite its significance, hysteresis remains underrepresented in mainstream models of plasticity. In this work, we propose a novel framework that explicitly models hysteresis in simple one- and two-neuron models. Our models capture key feedback-dependent phenomena such as bistability, multistability, periodicity, quasi-periodicity, and chaos, offering a more accurate and general representation of neural adaptation. This opens the door to new insights in computational neuroscience and neuromorphic system design. Synaptic weights change in several contexts or mechanisms including, Bienenstock–Cooper–Munro (BCM) synaptic modification, where synaptic changes depend on the level of post-synaptic activity; homeostatic plasticity, where all of a neuron synapses simultaneously scale up or down to maintain stability; metaplasticity, or plasticity of plasticity; neuromodulation, where neurotransmitters influence synaptic weights; developmental processes, where synaptic connections are actively formed, pruned and refined; disease or injury; for example, neurological conditions can induce maladaptive synaptic changes; spike-time dependent plasticity (STDP), where changes depend on the precise timing of pre- and postsynaptic spikes; and structural plasticity, where changes in dendritic spines and axonal boutons can alter synaptic strength. The ability of synapses and neurons to change in response to activity is fundamental to learning, memory formation, and cognitive adaptation. This paper presents simple continuous and discrete neuro-modules with adapting feedback synapses which in turn are subject to feedback. The dynamics of continuous periodically driven Hopfield neural networks with adapting synapses have been investigated since the 1990s in terms of periodicity and chaotic behaviors. For the first time, one- and two-neuron models are considered as parameters are varied using a feedback mechanism which more accurately represents real-world simulation, as explained earlier. It is shown that these models are history dependent. A simple discrete two-neuron model with adapting feedback synapses is analyzed in terms of stability and bifurcation diagrams are plotted as parameters are increased and decreased. This work has the potential to improve learning algorithms, increase understanding of neural memory formation, and inform neuromorphic engineering research. Full article
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16 pages, 4313 KiB  
Article
Mimicking Axon Growth and Pruning by Photocatalytic Growth and Chemical Dissolution of Gold on Titanium Dioxide Patterns
by Fatemeh Abshari, Moritz Paulsen, Salih Veziroglu, Alexander Vahl and Martina Gerken
Molecules 2025, 30(1), 99; https://doi.org/10.3390/molecules30010099 - 30 Dec 2024
Viewed by 796
Abstract
Biological neural circuits are based on the interplay of excitatory and inhibitory events to achieve functionality. Axons form long-range information highways in neural circuits. Axon pruning, i.e., the removal of exuberant axonal connections, is essential in network remodeling. We propose the photocatalytic growth [...] Read more.
Biological neural circuits are based on the interplay of excitatory and inhibitory events to achieve functionality. Axons form long-range information highways in neural circuits. Axon pruning, i.e., the removal of exuberant axonal connections, is essential in network remodeling. We propose the photocatalytic growth and chemical dissolution of gold lines as a building block for neuromorphic computing mimicking axon growth and pruning. We predefine photocatalytic growth areas on a surface by structuring titanium dioxide (TiO2) patterns. Placing the samples in a gold chloride (HAuCl4) precursor solution, we achieve the controlled growth of gold microstructures along the edges of the indium tin oxide (ITO)/TiO2 patterns under ultraviolet (UV) illumination. A potassium iodide (KI) solution is employed to dissolve the gold microstructures. We introduce a real-time monitoring setup based on an optical transmission microscope. We successfully observe both the growth and dissolution processes. Additionally, scanning electron microscopy (SEM) analysis confirms the morphological changes before and after dissolution, with dissolution rates closely aligned to the growth rates. These findings demonstrate the potential of this approach to emulate dynamic biological processes, paving the way for future applications in adaptive neuromorphic systems. Full article
(This article belongs to the Special Issue Photocatalytic Materials and Photocatalytic Reactions)
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16 pages, 2596 KiB  
Article
Actin Isoform Composition and Binding Factors Fine-Tune Regulatory Impact of Mical Enzymes
by Jose L. Martin, Aaqil Khan and Elena E. Grintsevich
Int. J. Mol. Sci. 2023, 24(23), 16651; https://doi.org/10.3390/ijms242316651 - 23 Nov 2023
Cited by 1 | Viewed by 1549
Abstract
Mical family enzymes are unusual actin regulators that prime filaments (F-actin) for disassembly via the site-specific oxidation of M44/M47. Filamentous actin acts as a substrate of Mical enzymes, as well as an activator of their NADPH oxidase activity, which leads to hydrogen peroxide [...] Read more.
Mical family enzymes are unusual actin regulators that prime filaments (F-actin) for disassembly via the site-specific oxidation of M44/M47. Filamentous actin acts as a substrate of Mical enzymes, as well as an activator of their NADPH oxidase activity, which leads to hydrogen peroxide generation. Mical enzymes are required for cytokinesis, muscle and heart development, dendritic pruning, and axonal guidance, among other processes. Thus, it is critical to understand how this family of actin regulators functions in different cell types. Vertebrates express six actin isoforms in a cell-specific manner, but MICALs’ impact on their intrinsic properties has never been systematically investigated. Our data reveal the differences in the intrinsic dynamics of Mical-oxidized actin isoforms. Furthermore, our results connect the intrinsic dynamics of actin isoforms and their redox state with the patterns of hydrogen peroxide (H2O2) generation by MICALs. We documented that the differential properties of actin isoforms translate into the distinct patterns of hydrogen peroxide generation in Mical/NADPH-containing systems. Moreover, our results establish a conceptual link between actin stabilization by interacting factors and its ability to activate MICALs’ NADPH oxidase activity. Altogether, our results suggest that the regulatory impact of MICALs may differ depending on the isoform-related identities of local actin networks. Full article
(This article belongs to the Section Biochemistry)
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17 pages, 5756 KiB  
Article
Oligodendrocytes Prune Axons Containing α-Synuclein Aggregates In Vivo: Lewy Neurites as Precursors of Glial Cytoplasmic Inclusions in Multiple System Atrophy?
by Francesco De Nuccio, Marianna Kashyrina, Francesca Serinelli, Florent Laferrière, Dario Domenico Lofrumento, Francesca De Giorgi and François Ichas
Biomolecules 2023, 13(2), 269; https://doi.org/10.3390/biom13020269 - 1 Feb 2023
Cited by 9 | Viewed by 8855
Abstract
α-Synucleinopathies are spreading neurodegenerative disorders characterized by the intracellular accumulation of insoluble aggregates populated by α-Synuclein (α-Syn) fibrils. In Parkinson’s disease (PD) and dementia with Lewy bodies, intraneuronal α-Syn aggregates are referred to as Lewy bodies in the somata and as Lewy neurites [...] Read more.
α-Synucleinopathies are spreading neurodegenerative disorders characterized by the intracellular accumulation of insoluble aggregates populated by α-Synuclein (α-Syn) fibrils. In Parkinson’s disease (PD) and dementia with Lewy bodies, intraneuronal α-Syn aggregates are referred to as Lewy bodies in the somata and as Lewy neurites in the neuronal processes. In multiple system atrophy (MSA) α-Syn aggregates are also found within mature oligodendrocytes (OLs) where they form Glial Cytoplasmic Inclusions (GCIs). However, the origin of GCIs remains enigmatic: (i) mature OLs do not express α-Syn, precluding the seeding and the buildup of inclusions and (ii) the artificial overexpression of α-Syn in OLs of transgenic mice results in a burden of soluble phosphorylated α-Syn but fails to form α-Syn fibrils. In contrast, mass spectrometry of α-Syn fibrillar aggregates from MSA patients points to the neuronal origin of the proteins intimately associated with the fibrils within the GCIs. This suggests that GCIs are preassembled in neurons and only secondarily incorporated into OLs. Interestingly, we recently isolated a synthetic human α-Syn fibril strain (1B fibrils) capable of seeding a type of neuronal inclusion observed early and specifically during MSA. Our goal was thus to investigate whether the neuronal α-Syn pathology seeded by 1B fibrils could eventually be transmitted to OLs to form GCIs in vivo. After confirming that mature OLs did not express α-Syn to detectable levels in the adult mouse brain, a series of mice received unilateral intra-striatal injections of 1B fibrils. The resulting α-Syn pathology was visualized using phospho-S129 α-Syn immunoreactivity (pSyn). We found that even though 1B fibrils were injected unilaterally, many pSyn-positive neuronal somas were present in layer V of the contralateral perirhinal cortex after 6 weeks. This suggested a fast retrograde spread of the pathology along the axons of crossing cortico-striatal neurons. We thus scrutinized the posterior limb of the anterior commissure, i.e., the myelinated interhemispheric tract containing the axons of these neurons: we indeed observed numerous pSyn-positive linear Lewy Neurites oriented parallel to the commissural axis, corresponding to axonal segments filled with aggregated α-Syn, with no obvious signs of OL α-Syn pathology at this stage. After 6 months however, the commissural Lewy neurites were no longer parallel but fragmented, curled up, sometimes squeezed in-between two consecutive OLs in interfascicular strands, or even engulfed inside OL perikarya, thus forming GCIs. We conclude that the 1B fibril strain can rapidly induce an α-Syn pathology typical of MSA in mice, in which the appearance of GCIs results from the pruning of diseased axonal segments containing aggregated α-Syn. Full article
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17 pages, 2286 KiB  
Article
Role of Caspases and Gasdermin A during HSV-1 Infection in Mice
by Lupeng Li, Stephen B. Kovacs, Ine Jørgensen, Heather N. Larson, Helen M. Lazear and Edward A. Miao
Viruses 2022, 14(9), 2034; https://doi.org/10.3390/v14092034 - 13 Sep 2022
Cited by 8 | Viewed by 3597
Abstract
Herpes simplex virus type 1 (HSV-1) infection can manifest locally as mucocutaneous lesions or keratitis and can also spread to the central nervous system to cause encephalitis. HSV-1 establishes a lifelong latent infection and neither cure nor vaccine is currently available. The innate [...] Read more.
Herpes simplex virus type 1 (HSV-1) infection can manifest locally as mucocutaneous lesions or keratitis and can also spread to the central nervous system to cause encephalitis. HSV-1 establishes a lifelong latent infection and neither cure nor vaccine is currently available. The innate immune response is the first line of defense against infection. Caspases and gasdermins are important components of innate immunity. Caspases are a family of cysteine proteases, most of which mediate regulated cell death. Gasdermins are a family of pore-forming proteins that trigger lytic cell death. To determine whether caspases or gasdermins contribute to innate immune defenses against HSV-1, we screened mice deficient in specific cell death genes. Our results indicate a modest role for caspase-6 in defense against HSV-1. Further, Asc–/–Casp1/11–/– mice also had a modest increased susceptibility to HSV-1 infection. Caspase-7, -8, and -14 did not have a notable role in controlling HSV-1 infection. We generated Gsdma1-Gsdma2-Gsdma3 triple knockout mice, which also had normal susceptibility to HSV-1. We confirmed that the previously published importance of RIPK3 during systemic HSV-1 infection also holds true during skin infection. Overall, our data highlight that as a successful pathogen, HSV-1 has multiple ways to evade host innate immune responses. Full article
(This article belongs to the Special Issue Signaling Pathways in Viral Infection and Antiviral Immunity)
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15 pages, 892 KiB  
Review
Modelling and Refining Neuronal Circuits with Guidance Cues: Involvement of Semaphorins
by Greta Limoni
Int. J. Mol. Sci. 2021, 22(11), 6111; https://doi.org/10.3390/ijms22116111 - 6 Jun 2021
Cited by 14 | Viewed by 5424
Abstract
The establishment of neuronal circuits requires neurons to develop and maintain appropriate connections with cellular partners in and out the central nervous system. These phenomena include elaboration of dendritic arborization and formation of synaptic contacts, initially made in excess. Subsequently, refinement occurs, and [...] Read more.
The establishment of neuronal circuits requires neurons to develop and maintain appropriate connections with cellular partners in and out the central nervous system. These phenomena include elaboration of dendritic arborization and formation of synaptic contacts, initially made in excess. Subsequently, refinement occurs, and pruning takes places both at axonal and synaptic level, defining a homeostatic balance maintained throughout the lifespan. All these events require genetic regulations which happens cell-autonomously and are strongly influenced by environmental factors. This review aims to discuss the involvement of guidance cues from the Semaphorin family. Full article
(This article belongs to the Special Issue Neuron and Brain Maturation)
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11 pages, 1546 KiB  
Review
Involvement of Bcl-xL in Neuronal Function and Development
by Julie Bas, Trang Nguyen and Germain Gillet
Int. J. Mol. Sci. 2021, 22(6), 3202; https://doi.org/10.3390/ijms22063202 - 21 Mar 2021
Cited by 15 | Viewed by 4571
Abstract
The B-cell lymphoma (Bcl-2) family of proteins are mainly known for their role in the regulation of apoptosis by preventing pore formation at the mitochondrial outer membrane and subsequent caspase activation. However, Bcl-2 proteins also have non-canonical functions, independent of apoptosis. Indeed, the [...] Read more.
The B-cell lymphoma (Bcl-2) family of proteins are mainly known for their role in the regulation of apoptosis by preventing pore formation at the mitochondrial outer membrane and subsequent caspase activation. However, Bcl-2 proteins also have non-canonical functions, independent of apoptosis. Indeed, the cell death machinery, including Bcl-2 homologs, was reported to be essential for the central nervous system (CNS), notably with respect to synaptic transmission and axon pruning. Here we focused on Bcl-xL, a close Bcl-2 homolog, which plays a major role in neuronal development, as bclx knock out mice prematurely die at embryonic day 13.5, showing massive apoptosis in the CNS. In addition, we present evidence that Bcl-xL fosters ATP generation by the mitochondria to fuel high energy needs by neurons, and its contribution to synaptic transmission. We discuss how Bcl-xL might control local and transient activation of caspases in neurons without causing cell death. Consistently, Bcl-xL may contribute to morphological changes, such as sprouting and retractation of axon branches, in the context of CNS plasticity. Regarding degenerative diseases and aging, a better understanding of the numerous roles of the cell death machinery in neurons may have future clinical implications. Full article
(This article belongs to the Special Issue Advances in Bcl-xL Research 2.0)
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17 pages, 1183 KiB  
Review
Microglial Pruning: Relevance for Synaptic Dysfunction in Multiple Sclerosis and Related Experimental Models
by Maria Concetta Geloso and Nadia D’Ambrosi
Cells 2021, 10(3), 686; https://doi.org/10.3390/cells10030686 - 20 Mar 2021
Cited by 51 | Viewed by 8720
Abstract
Microglia, besides being able to react rapidly to a wide range of environmental changes, are also involved in shaping neuronal wiring. Indeed, they actively participate in the modulation of neuronal function by regulating the elimination (or “pruning”) of weaker synapses in both physiologic [...] Read more.
Microglia, besides being able to react rapidly to a wide range of environmental changes, are also involved in shaping neuronal wiring. Indeed, they actively participate in the modulation of neuronal function by regulating the elimination (or “pruning”) of weaker synapses in both physiologic and pathologic processes. Mounting evidence supports their crucial role in early synaptic loss, which is emerging as a hallmark of several neurodegenerative diseases, including multiple sclerosis (MS) and its preclinical models. MS is an inflammatory, immune-mediated pathology of the white matter in which demyelinating lesions may cause secondary neuronal death. Nevertheless, primitive grey matter (GM) damage is emerging as an important contributor to patients’ long-term disability, since it has been associated with early and progressive cognitive decline (CD), which seriously worsens the quality of life of MS patients. Widespread synapse loss even in the absence of demyelination, axon degeneration and neuronal death has been demonstrated in different GM structures, thus raising the possibility that synaptic dysfunction could be an early and possibly independent event in the neurodegenerative process associated with MS. This review provides an overview of microglial-dependent synapse elimination in the neuroinflammatory process that underlies MS and its experimental models. Full article
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13 pages, 3159 KiB  
Article
Changes in Striatal Medium Spiny Neuron Morphology Resulting from Dopamine Depletion Are Reversible
by Victoria Sofie Witzig, Daniel Komnig and Björn H. Falkenburger
Cells 2020, 9(11), 2441; https://doi.org/10.3390/cells9112441 - 9 Nov 2020
Cited by 16 | Viewed by 5155
Abstract
The classical motor symptoms of Parkinson’s disease (PD) are caused by degeneration of dopaminergic neurons in the substantia nigra, which is followed by secondary dendritic pruning and spine loss at striatal medium spiny neurons (MSN). We hypothesize that these morphological changes at MSN [...] Read more.
The classical motor symptoms of Parkinson’s disease (PD) are caused by degeneration of dopaminergic neurons in the substantia nigra, which is followed by secondary dendritic pruning and spine loss at striatal medium spiny neurons (MSN). We hypothesize that these morphological changes at MSN underlie at least in part long-term motor complications in PD patients. In order to define the potential benefits and limitations of dopamine substitution, we tested in a mouse model whether dendritic pruning and spine loss can be reversible when dopaminergic axon terminals regenerate. In order to induce degeneration of nigrostriatal dopaminergic neurons we used the toxicity of 1-methyl-4-phenyl-1,2,3,6-tetrahydropyridine (MPTP) in C57BL/6J mice; 30 mg/kg MPTP was applied i.p. on five consecutive days. In order to assess the consequences of dopamine depletion, mice were analyzed 21 days after the last injection. In order to test reversibility of MSN changes we exploited the property of this model that striatal axon terminals regenerate by sprouting within 90 days and analyzed a second cohort 90 days after MPTP. Degeneration of dopaminergic neurons was confirmed by counting TH-positive neurons in the substantia nigra and by analyzing striatal catecholamines. Striatal catecholamine recovered 90 days after MPTP. MSN morphology was visualized by Golgi staining and quantified as total dendritic length, number of dendritic branch points, and density of dendritic spines. All morphological parameters of striatal MSN were reduced 21 days after MPTP. Statistical analysis indicated that dendritic pruning and the reduction of spine density represent two distinct responses to dopamine depletion. Ninety days after MPTP, all morphological changes recovered. Our findings demonstrate that morphological changes in striatal MSN resulting from dopamine depletion are reversible. They suggest that under optimal conditions, symptomatic dopaminergic therapy might be able to prevent maladaptive plasticity and long-term motor complications in PD patients. Full article
(This article belongs to the Collection Molecular and Cellular Mechanisms of Parkinson's Disease)
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19 pages, 2336 KiB  
Article
Loss of Non-Apoptotic Role of Caspase-3 in the PINK1 Mouse Model of Parkinson’s Disease
by Paola Imbriani, Annalisa Tassone, Maria Meringolo, Giulia Ponterio, Graziella Madeo, Antonio Pisani, Paola Bonsi and Giuseppina Martella
Int. J. Mol. Sci. 2019, 20(14), 3407; https://doi.org/10.3390/ijms20143407 - 11 Jul 2019
Cited by 22 | Viewed by 4534
Abstract
Caspases are a family of conserved cysteine proteases that play key roles in multiple cellular processes, including programmed cell death and inflammation. Recent evidence shows that caspases are also involved in crucial non-apoptotic functions, such as dendrite development, axon pruning, and synaptic plasticity [...] Read more.
Caspases are a family of conserved cysteine proteases that play key roles in multiple cellular processes, including programmed cell death and inflammation. Recent evidence shows that caspases are also involved in crucial non-apoptotic functions, such as dendrite development, axon pruning, and synaptic plasticity mechanisms underlying learning and memory processes. The activated form of caspase-3, which is known to trigger widespread damage and degeneration, can also modulate synaptic function in the adult brain. Thus, in the present study, we tested the hypothesis that caspase-3 modulates synaptic plasticity at corticostriatal synapses in the phosphatase and tensin homolog (PTEN) induced kinase 1 (PINK1) mouse model of Parkinson’s disease (PD). Loss of PINK1 has been previously associated with an impairment of corticostriatal long-term depression (LTD), rescued by amphetamine-induced dopamine release. Here, we show that caspase-3 activity, measured after LTD induction, is significantly decreased in the PINK1 knockout model compared with wild-type mice. Accordingly, pretreatment of striatal slices with the caspase-3 activator α-(Trichloromethyl)-4-pyridineethanol (PETCM) rescues a physiological LTD in PINK1 knockout mice. Furthermore, the inhibition of caspase-3 prevents the amphetamine-induced rescue of LTD in the same model. Our data support a hormesis-based double role of caspase-3; when massively activated, it induces apoptosis, while at lower level of activation, it modulates physiological phenomena, like the expression of corticostriatal LTD. Exploring the non-apoptotic activation of caspase-3 may contribute to clarify the mechanisms involved in synaptic failure in PD, as well as in view of new potential pharmacological targets. Full article
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