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Keywords = anodontia

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18 pages, 2527 KiB  
Article
Performance Comparison of Genomic Best Linear Unbiased Prediction and Four Machine Learning Models for Estimating Genomic Breeding Values in Working Dogs
by Joseph A. Thorsrud, Katy M. Evans, Kyle C. Quigley, Krishnamoorthy Srikanth and Heather J. Huson
Animals 2025, 15(3), 408; https://doi.org/10.3390/ani15030408 - 2 Feb 2025
Viewed by 1608
Abstract
This study investigates the efficacy of various genomic prediction models—Genomic Best Linear Unbiased Prediction (GBLUP), Random Forest (RF), Support Vector Machine (SVM), Extreme Gradient Boosting (XGB), and Multilayer Perceptron (MLP)—in predicting genomic breeding values (gEBVs). The phenotypic data include three binary health traits [...] Read more.
This study investigates the efficacy of various genomic prediction models—Genomic Best Linear Unbiased Prediction (GBLUP), Random Forest (RF), Support Vector Machine (SVM), Extreme Gradient Boosting (XGB), and Multilayer Perceptron (MLP)—in predicting genomic breeding values (gEBVs). The phenotypic data include three binary health traits (anodontia, distichiasis, oral papillomatosis) and one behavioral trait (distraction) in a population of guide dogs. These traits impact the potential for success in guide dogs and are therefore routinely characterized but were chosen based on differences in heritability and case counts specifically to assess gEBV model performance. Utilizing a dataset from The Seeing Eye organization, which includes German Shepherds (n = 482), Golden Retrievers (n = 239), Labrador Retrievers (n = 1188), and Labrador and Golden Retriever crosses (n = 111), we assessed model performance within and across different breeds, trait heritability, case counts, and SNP marker densities. Our results indicate that no significant differences were found in model performance across varying heritabilities, case counts, or SNP densities, with all models performing similarly. Given its lack of need for parameter optimization, GBLUP was the most efficient model. Distichiasis showed the highest overall predictive performance, likely due to its higher heritability, while anodontia and distraction exhibited moderate accuracy, and oral papillomatosis had the lowest accuracy, correlating with its low heritability. These findings underscore that lower density SNP datasets can effectively construct gEBVs, suggesting that high-cost, high-density genotyping may not always be necessary. Additionally, the similar performance of all models indicates that simpler models like GBLUP, which requires less fine tuning, may be sufficient for genomic prediction in canine breeding programs. The research highlights the importance of standardized phenotypic assessments and carefully constructed reference populations to optimize the utility of genomic selection in canine breeding programs. Full article
(This article belongs to the Special Issue Animal–Computer Interaction: Advances and Opportunities)
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17 pages, 5069 KiB  
Article
Investigating the Influence of a Tooth Absence on Facial Bone Growth Using a Porcine Model
by Dominika Szkopek, Piotr Wychowański, Kamil Zaworski, Blanka Seklecka, Rafał Starzyński, Paweł Lipiński, Kateryna Pierzynowska, Stefan G. Pierzynowski, Janine Donaldson, Łukasz Paczewski and Jarosław Woliński
Int. J. Mol. Sci. 2024, 25(23), 12509; https://doi.org/10.3390/ijms252312509 - 21 Nov 2024
Viewed by 1180
Abstract
With the current state of knowledge regarding disorders of facial bone development, including anodontia, the development of a suitable animal model for preclinical studies is essential. The agenesis of dental buds occurs in about 25% of the human population. Prospects for treatment include [...] Read more.
With the current state of knowledge regarding disorders of facial bone development, including anodontia, the development of a suitable animal model for preclinical studies is essential. The agenesis of dental buds occurs in about 25% of the human population. Prospects for treatment include the use of growth factors, stem cells, and bioengineering. This study aimed to investigate the influence of a tooth absence on facial bone growth, develop a technique for the application of growth factors to the developing bone, and analyze the comparative effect of the application of selected active proteins on the growth of the maxilla and mandible. Piglets underwent germectomy, followed by computed tomography and X-ray; morphometric and histological analyses of the bones were performed, blood bone morphogenetic protein 2 and platelet-derived growth factor concentrations were determined, and the transcriptomic profile of the dentate ligament was analyzed using DNA microarrays. It was not possible to identify the most effective growth factor application algorithm for achieving normal jaw development. Normal mandibular bone structure and oral mucosa structure were observed in the germectomy groups with growth factor augmentation. The average height of the mandibular alveolar part in the area of the removed dental buds was significantly lower compared with that of the inoperable side, 3 months after surgery. However, no significant differences were found in the serum concentrations of BMP-2 and PDGF between groups. The animal model of bone development disorders (including anodontia) developed in the current study and the scheme for evaluating the efficacy and safety of the application of replacement therapy for craniofacial malformations are important in the development of the discipline and represent an important contribution to the introduction of treatment methods. Full article
(This article belongs to the Special Issue Using Model Organisms to Study Complex Human Diseases)
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14 pages, 2036 KiB  
Article
EDA Variants Are Responsible for Approximately 90% of Deciduous Tooth Agenesis
by Lanxin Su, Bichen Lin, Miao Yu, Yang Liu, Shichen Sun, Hailan Feng, Haochen Liu and Dong Han
Int. J. Mol. Sci. 2024, 25(19), 10451; https://doi.org/10.3390/ijms251910451 - 27 Sep 2024
Cited by 2 | Viewed by 1334
Abstract
Deciduous tooth agenesis is a severe craniofacial developmental defect because it affects masticatory function from infancy and may result in delayed growth and development. Here, we aimed to identify the crucial pathogenic genes and clinical features of patients with deciduous tooth agenesis. We [...] Read more.
Deciduous tooth agenesis is a severe craniofacial developmental defect because it affects masticatory function from infancy and may result in delayed growth and development. Here, we aimed to identify the crucial pathogenic genes and clinical features of patients with deciduous tooth agenesis. We recruited 84 patients with severe deciduous tooth agenesis. Whole-exome and Sanger sequencing were used to identify the causative variants. Phenotype–genotype correlation analysis was conducted. We identified 54 different variants in 8 genes in 84 patients, including EDA (73, 86.9%), PAX9 (2, 2.4%), LRP6 (2, 2.4%), MSX1 (2, 2.4%), BMP4 (1, 1.2%), WNT10A (1, 1.2%), PITX2 (1, 1.2%), and EDARADD (1, 1.2%). Variants in ectodysplasin A (EDA) accounted for 86.9% of patients with deciduous tooth agenesis. Patients with the EDA variants had an average of 15.4 missing deciduous teeth. Mandibular deciduous central incisors had the highest missing rate (100%), followed by maxillary deciduous lateral incisors (98.8%) and mandibular deciduous lateral incisors (97.7%). Our results indicated that EDA gene variants are major pathogenic factors for deciduous tooth agenesis, and EDA is specifically required for deciduous tooth development. The results provide guidance for clinical diagnosis and genetic counseling of deciduous tooth agenesis. Full article
(This article belongs to the Section Molecular Genetics and Genomics)
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15 pages, 16106 KiB  
Case Report
Personalized and Complex Esthetic Oral Rehabilitation in a Case of Non-Syndromic Oligodontia
by Silvia Izabella Pop, Ana Procopciuc, Mihai Mițariu, Loredana Mițariu and Radu Vasile Pop
J. Pers. Med. 2024, 14(4), 350; https://doi.org/10.3390/jpm14040350 - 27 Mar 2024
Viewed by 2287
Abstract
Dental agenesis is one of the most common developmental anomalies in humans and it is frequently associated with several other oral abnormalities. The present case describes non-familial agenesis of permanent teeth in a twenty-one-year-old boy with no apparent systemic abnormalities. The treatment included [...] Read more.
Dental agenesis is one of the most common developmental anomalies in humans and it is frequently associated with several other oral abnormalities. The present case describes non-familial agenesis of permanent teeth in a twenty-one-year-old boy with no apparent systemic abnormalities. The treatment included a personalized and interdisciplinary approach involving endodontics, orthodontics, implant-supported restorations and prosthetic treatments. The treatment plan was thoroughly elaborated using photographic analysis, study models, orthopantomogram, CBCT and cephalograms. Virtual smile design, diagnostic waxing and mock-ups previsualized the treatment objectives. The edentulous spaces were reconstructed by inserting dental implants and monolithic zirconia implant-supported restorations. The final results showed a highly esthetic and functional rehabilitation. Periodic check-ups have shown that the stability of the result is well maintained and that the implant-supported restorations are an optimal solution for patients with multiple anodontia. Full article
(This article belongs to the Section Disease Biomarker)
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19 pages, 3241 KiB  
Article
A Missense Mutation in the Collagen Triple Helix of EDA Is Associated with X-Linked Recessive Hypohidrotic Ectodermal Dysplasia in Fleckvieh Cattle
by Sina Reinartz, Christine Weiß, Maike Heppelmann, Marion Hewicker-Trautwein, Maren Hellige, Laure Willen, Karsten Feige, Pascal Schneider and Ottmar Distl
Genes 2024, 15(1), 8; https://doi.org/10.3390/genes15010008 - 20 Dec 2023
Cited by 1 | Viewed by 1841
Abstract
Mutations within the ectodysplasin A (EDA) gene have been associated with congenital hypotrichosis and anodontia (HAD/XHED) in humans, mice, dogs and cattle. We identified a three-generation family of Fleckvieh cattle with male calves exhibiting clinical and histopathological signs consistent with an X-linked recessive [...] Read more.
Mutations within the ectodysplasin A (EDA) gene have been associated with congenital hypotrichosis and anodontia (HAD/XHED) in humans, mice, dogs and cattle. We identified a three-generation family of Fleckvieh cattle with male calves exhibiting clinical and histopathological signs consistent with an X-linked recessive HAD (XHED). Whole genome and Sanger sequencing of cDNA showed a perfect association of the missense mutation g.85716041G>A (ss2019497443, rs1114816375) within the EDA gene with all three cases following an X-linked recessive inheritance, but normal EDAR and EDARADD. This mutation causes an exchange of glycine (G) with arginine (R) at amino acid position 227 (p.227G>R) in the second collagen triple helix repeat domain of EDA. The EDA variant was associated with a significant reduction and underdevelopment of hair follicles along with a reduced outgrowth of hairs, a complete loss of seromucous nasolabial and mucous tracheal and bronchial glands and a malformation of and reduction in number of teeth. Thermostability of EDA G227R was reduced, consistent with a relatively mild hair and tooth phenotype. However, incisors and canines were more severely affected in one of the calves, which correlated with the presence of a homozygous missense mutation of RNF111 (g.51306765T>G), a putative candidate gene possibly associated with tooth number in EDA-deficient Fleckvieh calves. Full article
(This article belongs to the Special Issue Genomic View of Cattle Breeding and Domestication)
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12 pages, 716 KiB  
Systematic Review
Gaucher: A Systematic Review on Oral and Radiological Aspects
by Giuseppe Minervini, Rocco Franco, Maria Maddalena Marrapodi, Vini Mehta, Luca Fiorillo, Almir Badnjević, Gabriele Cervino and Marco Cicciù
Medicina 2023, 59(4), 670; https://doi.org/10.3390/medicina59040670 - 28 Mar 2023
Cited by 10 | Viewed by 3570
Abstract
Background and Objectives: Gaucher disease (GD) is a lysosomal storage disorder with the genetic autosomal recessive transmission. Bone involvement is a prevalent finding in Gaucher disease. It causes deformity and limits daily activities and the quality of life. In 75% of patients, [...] Read more.
Background and Objectives: Gaucher disease (GD) is a lysosomal storage disorder with the genetic autosomal recessive transmission. Bone involvement is a prevalent finding in Gaucher disease. It causes deformity and limits daily activities and the quality of life. In 75% of patients, there is bone involvement. This review aims to evaluate the principal findings in the jaw by a Cone-beam computed tomography (CBTC) and X-ray orthopantomography; Materials and Methods: PubMed, Web of Science, Lilacs and Scopus were systematically searched until 31 December 2022. In addition, a manual search was performed using the bibliography of selected articles and a Google Scholar search. Clinical studies were selected that considered principal radiographic findings in radiography in a group of patients affected by GD. Results: Out of 5079 papers, four studies were included. The main findings are generalized rarefaction and enlarged narrow space, anodontia. Conclusions: The exact mechanism of bone manifestation is probably due to the infiltration of Gaucher cells in the bone marrow and, consequently, the destruction of bone architecture. All long bones are a potential means of skeletal manifestation. The jaw is more affected than the maxilla, and the principal features are cortical thinning, osteosclerosis, pseudocystic lesions, mental demineralization, flattening in the head of the condyle, effacement of anatomical structures, thickening of maxillary sinus mucosa. The dentist plays a crucial role in diagnosing and treating these patients. Sometimes the diagnosis can be made by a simple panoramic radiograph. All long bones are affected, and the mandible is particularly involved. Full article
(This article belongs to the Special Issue Dentistry: A Multidisciplinary Approach)
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11 pages, 2085 KiB  
Case Report
Complete Pseudo-Anodontia in an Adult Woman with Pseudo-Hypoparathyroidism Type 1a: A New Additional Nonclassical Feature?
by Salvatore Sciacchitano, Gian Paolo De Francesco, Maria Piane, Camilla Savio, Claudia De Vitis, Simona Petrucci, Valentina Salvati, Marina Goldoni, Marco Fabiani, Alvaro Mesoraca, Caterina Micolonghi, Barbara Torres, Annalisa Piccinetti, Roberto Pippi and Rita Mancini
Diagnostics 2022, 12(12), 2997; https://doi.org/10.3390/diagnostics12122997 - 30 Nov 2022
Cited by 3 | Viewed by 3943
Abstract
Pseudo-anodontia consists in the clinical, not radiographic, absence of teeth, due to failure in their eruption. It has been reported as part of an extremely rare syndrome, named GAPO syndrome. Pseudo-hypoparathyroidism type 1a (PHPT-1a) is a rare condition, characterized by resistance to the [...] Read more.
Pseudo-anodontia consists in the clinical, not radiographic, absence of teeth, due to failure in their eruption. It has been reported as part of an extremely rare syndrome, named GAPO syndrome. Pseudo-hypoparathyroidism type 1a (PHPT-1a) is a rare condition, characterized by resistance to the parathyroid hormone (PTH), as well as to many other hormones, and resulting in hypocalcemia, hyperphosphatemia, and elevated PTH. We report here the case of a 32-year-old woman with a long-standing history of non-treated hypocalcemia, in the context of an undiagnosed PHPT-1a. She had an intellectual disability, showed clinical features of the Albright hereditary osteodystrophy (AHO) and presented signs of multiple hormone resistances. She received treatment for seizures since the age of six. Examination of her mouth revealed a complete absence of teeth. Treatment of hypocalcemia and hormone deficiencies were started only at 29 years of age. Genetic testing demonstrated the presence of a frameshift variant in the GNAS gene in the proband as well as in her mother. A Single Nucleotide Polymorphism (SNP) array analysis failed to demonstrate pathogenic copy number variants (CNVs) but showed several regions with loss of heterozygosity (LOHs) for a final percentage of 1.75%, compatible with a fifth degree of relationship. Clinical exome sequencing (CES) ruled out any damaging variants in all the teeth agenesis-related genes. In conclusion, although we performed an extensive genetic analysis in search of possible additional gene alterations that could explain the presence of the peculiar phenotypic characteristics observed in our patient, we could not find any additional genetic defects. Our results suggest that the association of genetically confirmed PHPT-1a and complete pseudo-anodontia associated with persistent patchy alopecia areata is a new additional nonclassical feature related to the GNAS pathogenic variant. Full article
(This article belongs to the Special Issue Diagnosis of Dental Diseases)
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11 pages, 2620 KiB  
Article
Primary Teeth Supported Fixed Prosthesis—A Predictable Treatment Alternative
by Sarit Naishlos, Liat Chaushu, Oded Ghelfan, Joseph Nissan, Benjamin Peretz, Tal Ratson, Gil Ben-Izhack, Moshe Davidovich and Sigalit Blumer
Children 2022, 9(6), 804; https://doi.org/10.3390/children9060804 - 30 May 2022
Viewed by 3673
Abstract
Background: Individuals with tooth agenesis often present a significant clinical challenge for dental practitioners. This retrospective study evaluated clinical and radiological long-term functional and esthetic outcomes following restoration using primary teeth to support fixed all-ceramic prosthesis in patients with teeth agenesis. Methods: Patients [...] Read more.
Background: Individuals with tooth agenesis often present a significant clinical challenge for dental practitioners. This retrospective study evaluated clinical and radiological long-term functional and esthetic outcomes following restoration using primary teeth to support fixed all-ceramic prosthesis in patients with teeth agenesis. Methods: Patients with teeth agenesis and at least one year follow-up were included. Examinations included panoramic X-ray, clinical examination and family history records. Only primary teeth without permanent teeth underneath were chosen. All ceramic fixed restorations were used. All data were collected from patient files. Outcome parameters included: restoration parameters (restoration survival, restoration fractures, restoration detachment, restoration replacement, and secondary caries), plaque index, and gingival index. Results: The study included 58 porcelain restorations inserted in 25 individuals; mean age 12 ± 2.1 years (range 10–19 years); mean number of missing teeth 12.3 ± 9 (range 6–12). Mean follow-up 48 ± 6 months (range 12–60 months). All restorations survived up to last follow-up, rendering a survival rate of 100%. Restorations outcome—porcelain chipping (9%), detachment (2%), no restoration replacement nor secondary caries, mean gingival index—0.7 ± 0.5 and mean plaque index—0.9 ± 0.3. Conclusions: In tooth agenesis, restoration using primary teeth to support fixed all-ceramic prosthesis is a viable treatment alternative. Full article
(This article belongs to the Special Issue Pediatric Oral Health)
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12 pages, 7639 KiB  
Article
X-Linked Hypohidrotic Ectodermal Dysplasia in Crossbred Beef Cattle Due to a Large Deletion in EDA
by Donal O’Toole, Irene M. Häfliger, Fabienne Leuthard, Brant Schumaker, Lynn Steadman, Brian Murphy, Cord Drögemüller and Tosso Leeb
Animals 2021, 11(3), 657; https://doi.org/10.3390/ani11030657 - 2 Mar 2021
Cited by 7 | Viewed by 4229
Abstract
X-linked hypohidrotic ectodermal dysplasia-1 (ECTD1) in people results in a spectrum of abnormalities, most importantly hypotrichosis, anodontia/oligodontia, and absent or defective ectodermally derived glands. Five Red Angus-Simmental calves born over a 6-year period demonstrated severe hypotrichosis and were diagnosed as affected with ECTD1-like [...] Read more.
X-linked hypohidrotic ectodermal dysplasia-1 (ECTD1) in people results in a spectrum of abnormalities, most importantly hypotrichosis, anodontia/oligodontia, and absent or defective ectodermally derived glands. Five Red Angus-Simmental calves born over a 6-year period demonstrated severe hypotrichosis and were diagnosed as affected with ECTD1-like syndrome. Two died of severe pneumonia within a week of birth. The skin of three affected calves revealed a predominance of histologically unremarkable small-caliber hair follicles. Larger follicles (>50 µm) containing medullated hairs (including guard and tactile hairs) were largely restricted to the muzzle, chin, tail, eyelids, tragus and distal portions of the limbs and tail. The mean histological density of hair follicles in flank skin of two affected calves was slightly greater than that in two unaffected calves. One affected calf was examined postmortem at 10 days of age to better characterize systemic lesions. Nasolabial, intranasal and tracheobronchial mucosal glands were absent, whereas olfactory glands were unaffected. Mandibular incisor teeth were absent. Premolar teeth were unerupted and widely spaced. Other than oligodontia, histological changes in teeth were modest, featuring multifocal disorganization of ameloblasts, new bone formation in dental alveoli, and small aggregates of osteodentin and cementum at the margins of the enamel organ. A 52,780 base pair deletion spanning six out of eight coding exons of EDA and all of AWAT2 was identified. Partial deletion of the EDA gene is the presumed basis for the reported X-chromosomal recessive inherited genodermatosis. Full article
(This article belongs to the Special Issue Congenital Malformation in Domestic Animals)
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18 pages, 8295 KiB  
Article
Antxr1, Which is a Target of Runx2, Regulates Chondrocyte Proliferation and Apoptosis
by Qing Jiang, Xin Qin, Carolina Andrea Yoshida, Hisato Komori, Kei Yamana, Shinsuke Ohba, Hironori Hojo, Brad St. Croix, Viviane K. S. Kawata-Matsuura and Toshihisa Komori
Int. J. Mol. Sci. 2020, 21(7), 2425; https://doi.org/10.3390/ijms21072425 - 31 Mar 2020
Cited by 16 | Viewed by 4112
Abstract
Antxr1/Tem8 is highly expressed in tumor endothelial cells and is a receptor for anthrax toxin. Mutation of Antxr1 causes GAPO syndrome, which is characterized by growth retardation, alopecia, pseudo-anodontia, and optic atrophy. However, the mechanism underlying the growth retardation remains to be clarified. [...] Read more.
Antxr1/Tem8 is highly expressed in tumor endothelial cells and is a receptor for anthrax toxin. Mutation of Antxr1 causes GAPO syndrome, which is characterized by growth retardation, alopecia, pseudo-anodontia, and optic atrophy. However, the mechanism underlying the growth retardation remains to be clarified. Runx2 is essential for osteoblast differentiation and chondrocyte maturation and regulates chondrocyte proliferation through Ihh induction. In the search of Runx2 target genes in chondrocytes, we found that Antxr1 expression is upregulated by Runx2. Antxr1 was highly expressed in cartilaginous tissues and was directly regulated by Runx2. In skeletal development, the process of endochondral ossification proceeded similarly in wild-type and Antxr1–/– mice. However, the limbs of Antxr1–/– mice were shorter than those of wild-type mice from embryonic day 16.5 due to the reduced chondrocyte proliferation. Chondrocyte-specific Antxr1 transgenic mice exhibited shortened limbs, although the process of endochondral ossification proceeded as in wild-type mice. BrdU-uptake and apoptosis were both increased in chondrocytes, and the apoptosis-high regions were mineralized. These findings indicated that Antxr1, of which the expression is regulated by Runx2, plays an important role in chondrocyte proliferation and that overexpression of Antxr1 causes chondrocyte apoptosis accompanied by matrix mineralization. Full article
(This article belongs to the Special Issue Molecular Processes in Chondrocyte Biology)
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