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Keywords = SFTA2

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19 pages, 3260 KiB  
Article
Binary and Multi-Class Malware Threads Classification
by Ismail Taha Ahmed, Norziana Jamil, Marina Md. Din and Baraa Tareq Hammad
Appl. Sci. 2022, 12(24), 12528; https://doi.org/10.3390/app122412528 - 7 Dec 2022
Cited by 13 | Viewed by 2806
Abstract
The security of a computer system can be harmed by specific applications, such as malware. Malware comprises unwanted, dangerous enemies that aim to compromise the security and generate significant loss. Consequently, Malware Detection (MD) and Malware Classification (MC) has emerged as a key [...] Read more.
The security of a computer system can be harmed by specific applications, such as malware. Malware comprises unwanted, dangerous enemies that aim to compromise the security and generate significant loss. Consequently, Malware Detection (MD) and Malware Classification (MC) has emerged as a key issue for the cybersecurity society. MD only involves locating malware without determining what kind of malware it is, but MC comprises assigning a class of malware to a particular sample. Recently, a few techniques for analyzing malware quickly have been put out. However, there remain numerous difficulties, such as the low classification accuracy of samples from related malware families, the computational complexity, and consumption of resources. These difficulties make detecting and classifying malware very challenging. Therefore, in this paper, we proposed an efficient malware detection and classification technique that combines Segmentation-based Fractal Texture Analysis (SFTA) and Gaussian Discriminant Analysis (GDA). The outcomes of the experiment demonstrate that the SFTA-GDA produces a high classification rate. There are three main steps involved in our malware analysis, namely: (i) malware conversion; (ii) feature extraction; and (iii) classification. We initially convert the RGB malware images into grayscale malware images for effective malware analysis. The SFTA and Gabor features are then extracted from gray-scale images in the feature extraction step. Finally, the classification is carried out by GDA and Naive Bayes (NB). The proposed method is evaluated on a common MaleVis dataset. The proposed SFTA-GDA is the effective choice since it produces the highest accuracy rate across all families of the MaleVis Database. Experimental findings indicate that the accuracy rate was 98%, which is higher than the overall accuracy from the existing state-of-the-art methods. Full article
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18 pages, 6660 KiB  
Article
C10orf55, CASC2, and SFTA1P lncRNAs Are Potential Biomarkers to Assess Radiation Therapy Response in Head and Neck Cancers
by Anna Paszkowska, Tomasz Kolenda, Kacper Guglas, Joanna Kozłowska-Masłoń, Marta Podralska, Anna Teresiak, Renata Bliźniak, Agnieszka Dzikiewicz-Krawczyk and Katarzyna Lamperska
J. Pers. Med. 2022, 12(10), 1696; https://doi.org/10.3390/jpm12101696 - 11 Oct 2022
Cited by 5 | Viewed by 2305
Abstract
Long non-coding RNAs have proven to be important molecules in carcinogenesis. Due to little knowledge about them, the molecular mechanisms of tumorigenesis are still being explored. The aim of this work was to study the effect of ionizing radiation on the expression of [...] Read more.
Long non-coding RNAs have proven to be important molecules in carcinogenesis. Due to little knowledge about them, the molecular mechanisms of tumorigenesis are still being explored. The aim of this work was to study the effect of ionizing radiation on the expression of lncRNAs in head and neck squamous cell carcinoma (HNSCC) in patients responding and non-responding to radiotherapy. The experimental model was created using a group of patients with response (RG, n = 75) and no response (NRG, n = 75) to radiotherapy based on the cancer genome atlas (TCGA) data. Using the in silico model, statistically significant lncRNAs were defined and further validated on six HNSCC cell lines irradiated at three different doses. Based on the TCGA model, C10orf55, C3orf35, C5orf38, CASC2, MEG3, MYCNOS, SFTA1P, SNHG3, and TMEM105, with the altered expression between the RG and NRG were observed. Analysis of pathways and immune profile indicated that these lncRNAs were associated with changes in processes, such as epithelial-to-mesenchymal transition, regulation of spindle division, and the p53 pathway, and differences in immune cells score and lymphocyte infiltration signature score. However, only C10orf55, CASC2, and SFTA1P presented statistically altered expression after irradiation in the in vitro model. In conclusion, the expression of lncRNAs is affected by ionization radiation in HNSCC, and these lncRNAs are associated with pathways, which are important for radiation response and immune response. Potentially presented lncRNAs could be used as biomarkers for personalized radiotherapy in the future. However, these results need to be verified based on an in vitro experimental model to show a direct net of interactions. Full article
(This article belongs to the Special Issue Personalized Radiotherapy)
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16 pages, 2656 KiB  
Article
The Potential Role of SP-G as Surface Tension Regulator in Tear Film: From Molecular Simulations to Experimental Observations
by Martin Schicht, Kamila Riedlová, Mercedes Kukulka, Wenyue Li, Aurelius Scheer, Fabian Garreis, Christina Jacobi, Friedrich Paulsen, Lukasz Cwiklik and Lars Bräuer
Int. J. Mol. Sci. 2022, 23(10), 5783; https://doi.org/10.3390/ijms23105783 - 21 May 2022
Cited by 4 | Viewed by 2771
Abstract
The ocular surface is in constant interaction with the environment and with numerous pathogens. Therefore, complex mechanisms such as a stable tear film and local immune defense mechanisms are required to protect the eye. This study describes the detection, characterization, and putative role [...] Read more.
The ocular surface is in constant interaction with the environment and with numerous pathogens. Therefore, complex mechanisms such as a stable tear film and local immune defense mechanisms are required to protect the eye. This study describes the detection, characterization, and putative role of surfactant protein G (SP-G/SFTA2) with respect to wound healing and surface activity. Bioinformatic, biochemical, and immunological methods were combined to elucidate the role of SP-G in tear film. The results show the presence of SP-G in ocular surface tissues and tear film (TF). Increased expression of SP-G was demonstrated in TF of patients with dry eye disease (DED). Addition of recombinant SP-G in combination with lipids led to an accelerated wound healing of human corneal cells as well as to a reduction of TF surface tension. Molecular modeling of TF suggest that SP-G may regulate tear film surface tension and improve its stability through specific interactions with lipids components of the tear film. In conclusion, SP-G is an ocular surface protein with putative wound healing properties that can also reduce the surface tension of the tear film. Full article
(This article belongs to the Special Issue Precision Medicine in Ocular Diseases)
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11 pages, 2635 KiB  
Article
A Steganalysis Classification Algorithm Based on Distinctive Texture Features
by Baraa Tareq Hammad, Ismail Taha Ahmed and Norziana Jamil
Symmetry 2022, 14(2), 236; https://doi.org/10.3390/sym14020236 - 25 Jan 2022
Cited by 25 | Viewed by 3912
Abstract
Steganography is the technique for secretly hiding messages in media such as text, audio, image, and video without being discovered. Image is one of the most essential media for concealing data, making it hard to identify hidden data not visible to the human [...] Read more.
Steganography is the technique for secretly hiding messages in media such as text, audio, image, and video without being discovered. Image is one of the most essential media for concealing data, making it hard to identify hidden data not visible to the human eye. In general, the cover image and the encrypted image are symmetrical in terms of dimension size, resolution, and qualities. This makes the difference difficult to perceive with the human eye. As a result, distinguishing between the two symmetric images required the development of methods. Steganalysis is a technique for identifying hidden messages embedded in digital material without having to know the embedding algorithm or the “non-stego” image. Due to their enormous feature vector dimension, which requires more time to calculate, the performance of most existing image steganalysis classification (ISC) techniques is still restricted. Therefore, in this research, we present a steganalysis classification method based on one of the texture features chosen, such as segmentation-based fractal texture analysis (SFTA), local binary pattern (LBP), and gray-level co-occurrence matrix (GLCM). The classifiers employed include Gaussian discriminant analysis (GDA) and naïve Bayes (NB). We used a public database in our proposed method and applied it to IStego100K datasets to be able to assess its performance. The experimental results reveal that in all classifiers, the SFTA feature surpassed all of the texture features, making it a great texture feature for image steganalysis classification. In terms of feature dimension and classification accuracy (CA), a comparison was made between the suggested SFTA-based GDA approach and various current ISC methods. The outcomes of the comparison are obvious show that the proposed method surpasses current methods. Full article
(This article belongs to the Section Computer)
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29 pages, 9758 KiB  
Article
Surfactant Protein-G in Wildtype and 3xTg-AD Mice: Localization in the Forebrain, Age-Dependent Hippocampal Dot-like Deposits and Brain Content
by Anton Meinicke, Wolfgang Härtig, Karsten Winter, Joana Puchta, Bianca Mages, Dominik Michalski, Alexander Emmer, Markus Otto, Karl-Titus Hoffmann, Willi Reimann, Matthias Krause and Stefan Schob
Biomolecules 2022, 12(1), 96; https://doi.org/10.3390/biom12010096 - 7 Jan 2022
Cited by 3 | Viewed by 2785
Abstract
The classic surfactant proteins (SPs) A, B, C, and D were discovered in the lungs, where they contribute to host defense and regulate the alveolar surface tension during breathing. Their additional importance for brain physiology was discovered decades later. SP-G, a novel amphiphilic [...] Read more.
The classic surfactant proteins (SPs) A, B, C, and D were discovered in the lungs, where they contribute to host defense and regulate the alveolar surface tension during breathing. Their additional importance for brain physiology was discovered decades later. SP-G, a novel amphiphilic SP, was then identified in the lungs and is mostly linked to inflammation. In the brain, it is also present and significantly elevated after hemorrhage in premature infants and in distinct conditions affecting the cerebrospinal fluid circulation of adults. However, current knowledge on SP-G-expression is limited to ependymal cells and some neurons in the subventricular and superficial cortex. Therefore, we primarily focused on the distribution of SP-G-immunoreactivity (ir) and its spatial relationships with components of the neurovascular unit in murine forebrains. Triple fluorescence labeling elucidated SP-G-co-expressing neurons in the habenula, infundibulum, and hypothalamus. Exploring whether SP-G might play a role in Alzheimer’s disease (AD), 3xTg-AD mice were investigated and displayed age-dependent hippocampal deposits of β-amyloid and hyperphosphorylated tau separately from clustered, SP-G-containing dots with additional Reelin-ir—which was used as established marker for disease progression in this specific context. Semi-quantification of those dots, together with immunoassay-based quantification of intra- and extracellular SP-G, revealed a significant elevation in old 3xTg mice when compared to age-matched wildtype animals. This suggests a role of SP-G for the pathophysiology of AD, but a confirmation with human samples is required. Full article
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23 pages, 4024 KiB  
Article
Hybrid Malware Classification Method Using Segmentation-Based Fractal Texture Analysis and Deep Convolution Neural Network Features
by Maryam Nisa, Jamal Hussain Shah, Shansa Kanwal, Mudassar Raza, Muhammad Attique Khan, Robertas Damaševičius and Tomas Blažauskas
Appl. Sci. 2020, 10(14), 4966; https://doi.org/10.3390/app10144966 - 19 Jul 2020
Cited by 115 | Viewed by 8448
Abstract
As the number of internet users increases so does the number of malicious attacks using malware. The detection of malicious code is becoming critical, and the existing approaches need to be improved. Here, we propose a feature fusion method to combine the features [...] Read more.
As the number of internet users increases so does the number of malicious attacks using malware. The detection of malicious code is becoming critical, and the existing approaches need to be improved. Here, we propose a feature fusion method to combine the features extracted from pre-trained AlexNet and Inception-v3 deep neural networks with features attained using segmentation-based fractal texture analysis (SFTA) of images representing the malware code. In this work, we use distinctive pre-trained models (AlexNet and Inception-V3) for feature extraction. The purpose of deep convolutional neural network (CNN) feature extraction from two models is to improve the malware classifier accuracy, because both models have characteristics and qualities to extract different features. This technique produces a fusion of features to build a multimodal representation of malicious code that can be used to classify the grayscale images, separating the malware into 25 malware classes. The features that are extracted from malware images are then classified using different variants of support vector machine (SVM), k-nearest neighbor (KNN), decision tree (DT), and other classifiers. To improve the classification results, we also adopted data augmentation based on affine image transforms. The presented method is evaluated on a Malimg malware image dataset, achieving an accuracy of 99.3%, which makes it the best among the competing approaches. Full article
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18 pages, 1146 KiB  
Review
The Function of Non-Coding RNAs in Lung Cancer Tumorigenesis
by Cornelia Braicu, Alina-Andreea Zimta, Antonia Harangus, Ioana Iurca, Alexandru Irimie, Ovidiu Coza and Ioana Berindan-Neagoe
Cancers 2019, 11(5), 605; https://doi.org/10.3390/cancers11050605 - 30 Apr 2019
Cited by 120 | Viewed by 7706
Abstract
Lung cancer is the most prevalent and deadliest cancer worldwide. A significant part of lung cancer studies is dedicated to the expression alterations of non-coding RNAs. The non-coding RNAs are transcripts that cannot be translated into proteins. While the study of microRNAs and [...] Read more.
Lung cancer is the most prevalent and deadliest cancer worldwide. A significant part of lung cancer studies is dedicated to the expression alterations of non-coding RNAs. The non-coding RNAs are transcripts that cannot be translated into proteins. While the study of microRNAs and siRNAs in lung cancer received a lot of attention over the last decade, highly efficient therapeutic option or the diagnostic methods based on non-coding RNAs are still lacking. Because of this, it is of utmost importance to direct future research on lung cancer towards analyzing other RNA types for which the currently available data indicates that are essential at modulating lung tumorigenesis. Through our review of studies on this subject, we identify the following non-coding RNAs as tumor suppressors: ts-46, ts-47, ts-101, ts-53, ts-3676, ts-4521 (tRNA fragments), SNORD116-26, HBII-420, SNORD15A, SNORA42 (snoRNAs), piRNA-like-163, piR-35127, the piR-46545 (piRNAs), CHIAP2, LOC100420907, RPL13AP17 (pseudogenes), and uc.454 (T-UCR). We also found non-coding RNAs with tumor-promoting function: tRF-Leu-CAG, tRNA-Leu, tRNA-Val (tRNA fragments), circ-RAD23B, circRNA 100146, circPVT1, circFGFR3, circ_0004015, circPUM1, circFLI1, circABCB10, circHIPK3 (circRNAs), SNORA42, SNORA3, SNORD46, SNORA21, SNORD28, SNORA47, SNORD66, SNORA68, SNORA78 (snoRNAs), piR-65, piR-34871, piR-52200, piR651 (piRNAs), hY4 5’ fragments (YRNAs), FAM83A-AS1, WRAP53, NKX2-1-AS1 (NATs), DUXAP8, SFTA1P (pseudogene transcripts), uc.338, uc.339 (T-UCRs), and hTERC. Full article
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