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Keywords = Precision ID Identity Panel

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27 pages, 32087 KB  
Article
A Label-Free Panel Recognition Method Based on Close-Range Photogrammetry and Feature Fusion
by Enshun Lu, Zhe Guo, Xiaofeng Li, Daode Zhang and Rui Lu
Appl. Sci. 2025, 15(19), 10835; https://doi.org/10.3390/app151910835 - 9 Oct 2025
Viewed by 872
Abstract
In the interior decoration panel industry, automated production lines have become the standard configuration for large-scale enterprises. However, during the panel processing procedures such as sanding and painting, the loss of traditional identification markers like QR codes or barcodes is inevitable. This creates [...] Read more.
In the interior decoration panel industry, automated production lines have become the standard configuration for large-scale enterprises. However, during the panel processing procedures such as sanding and painting, the loss of traditional identification markers like QR codes or barcodes is inevitable. This creates a critical technical bottleneck in the assembly stage of customized or multi-model parallel production lines, where identifying individual panels significantly limits production efficiency. To address this issue, this paper proposes a high-precision measurement method based on close-range photogrammetry for capturing panel dimensions and hole position features, enabling accurate extraction of identification markers. Building on this foundation, an identity discrimination method that integrates weighted dimension and hole position IDs has been developed, making it feasible to efficiently and automatically identify panels without physical identification markers. Experimental results demonstrate that the proposed method exhibits significant advantages in both recognition accuracy and production adaptability, providing an effective solution for intelligent manufacturing in the home decoration panel industry. Full article
(This article belongs to the Section Computing and Artificial Intelligence)
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36 pages, 2063 KB  
Review
Applications and Performance of Precision ID GlobalFiler NGS STR, Identity, and Ancestry Panels in Forensic Genetics
by Sharlize Pedroza Matute and Sasitaran Iyavoo
Genes 2024, 15(9), 1133; https://doi.org/10.3390/genes15091133 - 28 Aug 2024
Cited by 12 | Viewed by 5128
Abstract
Short Tandem Repeat (STR) testing via capillary electrophoresis is undoubtedly the most popular forensic genetic testing method. However, its low multiplexing capabilities and limited performance with challenging samples are among the factors pushing scientists towards new technologies. Next-generation sequencing (NGS) methods overcome some [...] Read more.
Short Tandem Repeat (STR) testing via capillary electrophoresis is undoubtedly the most popular forensic genetic testing method. However, its low multiplexing capabilities and limited performance with challenging samples are among the factors pushing scientists towards new technologies. Next-generation sequencing (NGS) methods overcome some of these limitations while also enabling the testing of Single-Nucleotide Polymorphisms (SNPs). Nonetheless, these methods are still under optimization, and their adoption into practice is limited. Among the available kits, Thermo Fisher Scientific (Waltham, MA, USA) produces three Precision ID Panels: GlobalFiler NGS STR, Identity, and Ancestry. A clear review of these kits, providing information useful for the promotion of their use, is, however, lacking. To close the gap, a literature review was performed to investigate the popularity, applications, and performance of these kits. Following the PRISMA guidelines, 89 publications produced since 2015 were identified. China was the most active country in the field, and the Identity Panel was the most researched. All kits appeared robust and useful for low-quality and low-quantity samples, while performance with mixtures varied. The need for more population data was highlighted, as well as further research surrounding variables affecting the quality of the sequencing results. Full article
(This article belongs to the Special Issue Strategies and Techniques in DNA Forensic Investigations)
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16 pages, 2777 KB  
Article
A New Computational Deconvolution Algorithm for the Analysis of Forensic DNA Mixtures with SNP Markers
by Yu Yin, Peng Zhang and Yu Xing
Genes 2022, 13(5), 884; https://doi.org/10.3390/genes13050884 - 15 May 2022
Cited by 7 | Viewed by 3946
Abstract
Single nucleotide polymorphisms (SNPs) support robust analysis on degraded DNA samples. However, the development of a systematic method to interpret the profiles derived from the mixtures is less studied, and it remains a challenge due to the bi-allelic nature of SNP markers. To [...] Read more.
Single nucleotide polymorphisms (SNPs) support robust analysis on degraded DNA samples. However, the development of a systematic method to interpret the profiles derived from the mixtures is less studied, and it remains a challenge due to the bi-allelic nature of SNP markers. To improve the discriminating power of SNPs, this study explored bioinformatic strategies to analyze mixtures. Then, computer-generated mixtures were produced using real-world massively parallel sequencing (MPS) data from the single samples processed with the Precision ID Identity Panel. Moreover, the values of the frequency of major allele reads (FMAR) were calculated and applied as key parameters to deconvolve the two-person mixtures and estimate mixture ratios. Four custom R language scripts (three for autosomes and one for Y chromosome) were designed with the K-means clustering method as a core algorithm. Finally, the method was validated with real-world mixtures. The results indicated that the deconvolution accuracy for evenly balanced mixtures was 100% or close to 100%, which was the same as the deconvolution accuracy of inferring the genotypes of the major contributor of unevenly balanced mixtures. Meanwhile, the accuracy of inferring the genotypes of the minor contributor decreased as its proportion in the mixture decreased. Moreover, the estimated mixture ratio was almost equal to the actual ratio between 1:1 and 1:6. The method proposed in this study provides a new paradigm for mixture interpretation, especially for inferring contributor profiles of evenly balanced mixtures and the major contributor profile of unevenly balanced mixtures. Full article
(This article belongs to the Special Issue Genetic Structure of Human Populations)
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10 pages, 243 KB  
Article
Evaluation of OpenArray™ as a Genotyping Method for Forensic DNA Phenotyping and Human Identification
by Michele Ragazzo, Giulio Puleri, Valeria Errichiello, Laura Manzo, Laura Luzzi, Saverio Potenza, Claudia Strafella, Cristina Peconi, Fabio Nicastro, Valerio Caputo and Emiliano Giardina
Genes 2021, 12(2), 221; https://doi.org/10.3390/genes12020221 - 3 Feb 2021
Cited by 16 | Viewed by 5157
Abstract
A custom plate of OpenArray™ technology was evaluated to test 60 single-nucleotide polymorphisms (SNPs) validated for the prediction of eye color, hair color, and skin pigmentation, and for personal identification. The SNPs were selected from already validated subsets (Hirisplex-s, Precision ID Identity SNP [...] Read more.
A custom plate of OpenArray™ technology was evaluated to test 60 single-nucleotide polymorphisms (SNPs) validated for the prediction of eye color, hair color, and skin pigmentation, and for personal identification. The SNPs were selected from already validated subsets (Hirisplex-s, Precision ID Identity SNP Panel, and ForenSeq DNA Signature Prep Kit). The concordance rate and call rate for every SNP were calculated by analyzing 314 sequenced DNA samples. The sensitivity of the assay was assessed by preparing a dilution series of 10.0, 5.0, 1.0, and 0.5 ng. The OpenArray™ platform obtained an average call rate of 96.9% and a concordance rate near 99.8%. Sensitivity testing performed on serial dilutions demonstrated that a sample with 0.5 ng of total input DNA can be correctly typed. The profiles of the 19 SNPs selected for human identification reached a random match probability (RMP) of, on average, 10−8. An analysis of 21 examples of biological evidence from 8 individuals, that generated single short tandem repeat profiles during the routine workflow, demonstrated the applicability of this technology in real cases. Seventeen samples were correctly typed, revealing a call rate higher than 90%. Accordingly, the phenotype prediction revealed the same accuracy described in the corresponding validation data. Despite the reduced discrimination power of this system compared to STR based kits, the OpenArray™ System can be used to exclude suspects and prioritize samples for downstream analyses, providing well-established information about the prediction of eye color, hair color, and skin pigmentation. More studies will be needed for further validation of this technology and to consider the opportunity to implement this custom array with more SNPs to obtain a lower RMP and to include markers for studies of ancestry and lineage. Full article
(This article belongs to the Special Issue Advances in Forensic Genetics)
11 pages, 5587 KB  
Article
DNA Testing Reveals the Putative Identity of JB55, a 19th Century Vampire Buried in Griswold, Connecticut
by Jennifer Daniels-Higginbotham, Erin M. Gorden, Stephanie K. Farmer, Brian Spatola, Franklin Damann, Nicholas Bellantoni, Katie S. Gagnon, Maria de la Puente, Catarina Xavier, Susan Walsh, Walther Parson, Timothy P. McMahon and Charla Marshall
Genes 2019, 10(9), 636; https://doi.org/10.3390/genes10090636 - 22 Aug 2019
Cited by 8 | Viewed by 16807
Abstract
In 1990 in Griswold, Connecticut, archaeologists excavated a burial found in a “skull and crossbones” orientation. The lid of the 19th century coffin had brass tacks that spelled “JB55”, the initials of the person lying there and age at death. JB55 had evidence [...] Read more.
In 1990 in Griswold, Connecticut, archaeologists excavated a burial found in a “skull and crossbones” orientation. The lid of the 19th century coffin had brass tacks that spelled “JB55”, the initials of the person lying there and age at death. JB55 had evidence of chronic pulmonary infection, perhaps tuberculosis. It is possible that JB55 was deemed a vampire due to his disease, and therefore had to be “killed” by mutilating his corpse. In an attempt to reveal the identity of JB55, DNA testing was performed. Ancestry informative single nucleotide polymorphism (SNP) analysis using the Precision ID Ancestry Panel indicated European ancestry. A full Y-chromosomal short tandem repeat (Y-STR) profile was obtained, belonging to haplogroup R1b. When the Y-STR profile was searched in the publicly accessible FamilyTreeDNA R1b Project website, the two closest matches had the surname “Barber”. A search of historical records led to a death notice mentioning John Barber, whose son Nathan Barber was buried in Griswold in 1826. The description of Nathan Barber closely fits the burial of “NB13,” found near JB55. By applying modern forensic DNA tools to a historical mystery, the identity of JB55 as John Barber, the 19th century Connecticut vampire, has been revealed. Full article
(This article belongs to the Section Human Genomics and Genetic Diseases)
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