Search Results (77)

Straw returning is a critical practice with profound strategic importance for sustainable agricultural development. However, within a comprehensive soil health evaluation framework, research analyzing the impact of tobacco straw returning on soil ecosystem health from the perspectives of microbial taxa and functional genes remains insufficient. To investigate the effects of tobacco straw returning on virulence factor genes (VFGs), methane-cycling genes (MCGs), nitrogen-cycling genes (NCGs), carbohydrate-active enzyme genes (CAZyGs), antibiotic resistance genes (ARGs), and their host microorganisms in soil, this study collected soil samples from a long-term tobacco-rice rotation field with continuous tobacco straw incorporation in Shaowu City, Fujian Province. Metagenomic high-throughput sequencing was performed on the samples. The results demonstrated that long-term tobacco straw returning influenced the diversity of soil VFGs, MCGs, NCGs, CAZyGs, ARGs, and their host microorganisms, with richness significantly increasing compared to the CK treatment (p < 0.05). In the microbially mediated methane cycle, long-term tobacco straw returning resulted in a significant decrease in the abundance of the key methanogenesis gene mttB and the methanogenic archaeon Methanosarcina, along with a reduced mtaB/pmoA functional gene abundance ratio compared to CK. This suggests enhanced CH₄ oxidation in the tobacco-rice rotation field under straw returning. Notably, the abundance of plant pathogens increased significantly under tobacco straw returning. Furthermore, a significantly higher norB/nosZ functional gene abundance ratio was observed, indicating a reduced capacity of soil microorganisms to convert N₂O in the tobacco-rice rotation field under straw amendment. Based on the observation that the full-rate tobacco straw returning treatment (JT2) resulted in the lowest abundances of functional genes prkC, stkP, mttB, and the highest abundances of nirK, norB, malZ, and bglX, it can be concluded that shifts in soil physicochemical properties and energy substrates drove a transition in microbial metabolic strategies. This transition is characterized by a decreased pathogenic potential of soil bacteria, alongside an enhanced potential for microbial denitrification and cellulose degradation. Non-parametric analysis of matrix correlations revealed that soil organic carbon, dissolved organic carbon, alkaline-hydrolyzable nitrogen, available phosphorus, and available potassium were significantly correlated with the composition of soil functional groups (p < 0.05). In conclusion, long-term tobacco straw returning may increase the risk of soil-borne diseases in tobacco-rice rotation systems while potentially elevating N₂O and reducing CH₄ greenhouse gas emission rates. Analysis of functional gene abundance changes identified the full-rate tobacco straw returning treatment as the most effective among all treatments. Full article

Bacterial microcompartments (BMCs) are intracellular structures for compartmentalizing specific metabolic pathways in bacteria. As a unique type of BMCs, carboxysomes utilize protein shells to sequester ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) and carbonic anhydrase for efficient carbon dioxide (CO₂) fixation. This study aims to reconstruct an α-carboxysome in Saccharomyces cerevisiae and investigate its metabolic effects. Here, genes of the cso operon from Halothiobacillus neapolitanus, Calvin cycle-related enzyme phosphoribulokinase (PRK) from Spinacia oleracea, and two S. cerevisiae chaperone genes, HSP60 and HSP10, were introduced into S. cerevisiae. The engineered yeast strain demonstrated assembled and enzymatically active Rubisco, significant increase in ethanol production and reduction in the byproduct glycerol. Formation of the α-carboxysome structures was observed after purification by sucrose density gradient centrifugation. The engineered yeast strain harboring functional α-carboxysome has the potential for enhancing bioethanol production. Full article

Background/Objectives: Corneal re-epithelialization is a critical process following surgical procedures such as photorefractive keratectomy (PRK), phototherapeutic keratectomy (PTK), and corneal UV cross-linking (CXL), as well as cases of corneal abrasion. Delayed epithelial healing can lead to increased discomfort, a higher risk of infection, and suboptimal visual outcomes. This retrospective case series aims to evaluate the efficacy of a novel ophthalmic solution containing cross-linked carboxymethyl cellulose (CX-CMC) and silk proteins in promoting corneal re-epithelialization and improving post-surgical recovery. Patients and methods: A total of 15 patients who underwent PRK, PTK, or CXL or who presented with corneal abrasions were included in the study. Along with standard post-surgical treatment, patients received CX-CMC and silk protein-based eye drops (CORDEV, Ophtagon, Rome, Italy) six times a day. Corneal epithelial thickness was assessed using topography at follow-up visits. Results: Corneal re-epithelialization was observed in all subjects within 24 to 48 h post-procedure. The mean corneal epithelial thickness at 48 h was 73.21 µm, which falls within the typical range of a proliferating corneal epithelium. Conclusions: The CX-CMC and silk protein-based formulation accelerated corneal healing, achieving rapid epithelial recovery. This novel ophthalmic solution offers a promising alternative to conventional post-surgical treatments, potentially improving patient outcomes by reducing healing time, minimising discomfort, and lowering the risk of complications associated with delayed re-epithelialization. Full article

This study analyzed the impact of corneal epithelial refraction on the correction of hyperopic and mixed astigmatism eyes treated with transepithelial photorefractive keratectomy. From the epithelial refraction provided by the diagnostic device, OCT correlations were evaluated with respect to manifest refraction. The postoperative outcomes showed a mean sphere of −0.03 D and a mean cylinder of −0.33 D, with 93% and 98% having 0.5 D, 1 D, or less spherical equivalent refractive error. The epithelium showed preoperative toricity: at 6 mm, the epithelium showed a compensational effect of ~15% for the refractive astigmatism, whereas at 3 mm, the compensation accounted for ~25% of the refractive astigmatism. No correlation was found between preoperative epithelial refraction and refractive deviation after hyperopic or mixed astigmatic transepithelial photorefractive treatment. This work provides insight into the refractive compensatory impact of the epithelium, suggests how one can benefit from that in transepithelial corrections, and sets a framework for the potential induction of errors in non-transepithelial corrections. Full article

Cryptochrome is an important class of blue-light receptors involved in various physiological activities such as photomorphogenesis and abiotic stress regulation in plants. In order to investigate the molecular mechanism of blue-light-induced color change in Chimonobambusa sichuanensis, we screened and cloned the gene encoding the blue-light receptor Cryptochrome. In order to investigate the molecular mechanism of blue-light-induced color change in Chimonobambusa sichuanensis, we screened and cloned the gene encoding the blue-light receptor Cryptochrome in Ch.sichuanensis, and analyzed the expression characteristics of the Cryptochrome gene in Ch.sichuanensis under different light intensities, light quality, and temperatures by qRT-PCR. Through homologous cloning, a total of four CsCRY genes were obtained in the Ch.sichuanensis genome, namely, CsCRY1a, CsCRY1b, CsCRY2, and CsCRY3. Structural domain analyses of the encoded proteins of the four genes revealed that all CsCRYs proteins had the typical photoreceptor structural domain, PRK (protein kinase C-related kinase). Phylogenetic tree analyses revealed that the four genes CsCRY1a, CsCRY1b, CsCRY2, and CsCRY3 could be categorized into three subfamilies, with CsCRY1a and CsCRY1b clustered in subfamily I, CsCRY2 classified in subfamily II, and CsCRY3 belonging to subfamily III. All CsCRYs proteins lacked signal peptides and the instability index was higher than 40, among which the isoelectric points of CsCRY1a, CsCRY1b, and CsCRY2 were around five. qRT-PCR analysis revealed that the expression of all four CsCRYs genes was up-regulated at 75 µmol·m⁻²·s⁻¹ blue-light illumination for 4 h. In addition, under treatments of different light quality, the expression of CsCRY2 genes was significantly higher under blue light than under red light and a mixture of red light and blue light with a light intensity of 1:1; the expression of CsCRY1a and CsCSY1b was significantly higher in the mixed light of red and blue light than in the single light treatment, while under different temperature gradients, CsCRYs genes were highly expressed under low-temperature stress at −5 °C and 0 °C. This study provides a basis for further research on blue-light-induced color change in Ch.sichuanensis and expands the scope of Cryptochrome gene research. Full article

Background/Objectives: To evaluate the efficacy, accuracy, safety, and long-term stability of topography-guided photorefractive keratectomy (TGPRK) in eyes where post-LASIK (PLE) ectasia progression was stabilized with under-flap corneal crosslinking (ufCXL). Methods: This retrospective interventional case series included six eyes from five patients with PLE after microkeratome LASIK. All eyes underwent ufCXL to halt ectatic progression. A shallow TGPRK enhancement was performed on the LASIK flap surface after corneal and refractive stability was confirmed (18 months median) post ufCXL Outcome measures included uncorrected and corrected distance visual acuity (UDVA, CDVA), spherical equivalent (SEQ), refractive astigmatism, keratometry, and corneal irregularity indices over a mean follow-up of 47 months. Results: ufCXL stabilized ectatic progression but left residual refractive errors, limiting UDVA. TGPRK performed subsequently significantly improved UDVA, from 0.38 to 0.10 LogMAR (p = 0.017), and increased the LASIK efficacy index from 0.46 to 0.83 (p = 0.0087). Refractive astigmatism was reduced in all eyes achieving a SEQ within ±1.00 D of the target. Long-term stability was maintained, with no ectasia progression, no change in SEQ, no change in corneal irregularity indices, and no increase in maximal keratometry. Conclusions: TGPRK performed in ufCXL stabilized corneas can safely correct residual refractive errors, resulting in significant and sustained improvements in both refractive and visual outcomes in PLE. Full article

Objectives: Corneal refractive surgery aims to correct refractive errors. Proper corneal alignment is crucial. Eye-tracking technologies, specifically designed to address cyclotorsion using iris registration, help reduce the effects of cyclotorsion during surgery. The timing of iris registration can influence the efficacy of these technologies. This study compared cyclotorsion measurements before and after flap elevation/epithelium removal in FemtoLASIK and alcohol-assisted (aa) PRK. Methods: This retrospective cohort study was conducted at Einaim Medical Centers, Israel, and included patients who underwent refractive surgery using the VISX Star S4 IR excimer laser. Cyclotorsion measurements were obtained pre- and post-flap elevation or removal using the Wavescan™ and VISX Star S4 iris registration systems. Patients’ data were collected and analyzed retrospectively. Results: Overall, 152 eyes of 86 patients were included. In the FemtoLASIK group, 73 eyes from 45 patients were analyzed. For pre-flap lift, 34.2% had incyclotorsion and 65.8% had excyclotorsion, with a mean cyclotorsion of 2.3 ± 1.5 degrees. For post-flap lift, the mean cyclotorsion was 2.8 ± 1.9 degrees, showing a significant difference (p = 0.01). In the aa-PRK group, 79 eyes from 41 patients were analyzed. For pre-flap removal, 45.6% had incyclotorsion and 53.2% had excyclotorsion, with a mean cyclotorsion of 2.6 ± 1.8 degrees. For post-flap removal, the mean cyclotorsion was 2.5 ± 2.1 degrees, with no significant difference (p = 0.47) and a mean change of 1.6 ± 1.2 degrees. A total of 15.2% of eyes in the aa-PRK group and 13.6% in the LASIK group exhibited more than 3 degrees of cyclotorsional difference before and after flap lift or epithelial removal. Conclusions: Cyclotorsion occurs after flap lift/removal. To minimize residual astigmatism, iris registration should be performed post-flap elevation. Full article

Purpose: This study aimed to assess the efficacy of for PODEYE TORIC intraocular lenses (IOL). Methods: This study was a retrospective, non-randomized, interventional case series. Inclusion criteria comprised diagnosis of an age-related cataract and a corneal astigmatism equal to or higher than 0.9 D and undergoing implantation of toric IOLs (TIOL). A single toric lens model (PodEye Toric, BVI) was used in all cases. Results: The study includes 51 eyes of 35 patients with TIOL implantation with a mean follow-up time of 45.7 (±36.5) days. Fourteen patients were targeted for mono-vision. Eight eyes had previously undergone refractive surgery (five post Myopic Lasik/PRK, two post RK/AK and one post RK). The mean postoperative adjusted spherical equivalent (SEQ) was −0.57 D ± 0.31 and the residual postoperative refractive astigmatism was −0.49 D ± 0.50. Only 2% of patients had a preoperative subjective astigmatism lower than 1.0 D whereas postoperatively, 94% of the patients had a residual astigmatism of 1.0 D or lower. The average deviation from the planned axis was 2.66 ± 0.26 degrees. None of the IOLs rotated to 10° or higher and 88% remained at 5° or less on the intended IOL axis. Twenty-six (63%) of IOL rotations were counterclockwise. Conclusions: PODEYE TORIC intraocular lenses provide exceptional refractive precision, reliable rotational stability, and consistently strong postoperative vision outcomes. Full article

Background/Objectives: To compare the visual and refractive outcomes of myopic patients undergoing high astigmatic photorefractive keratectomy (PRK) surgery with and without pupillary decentration of treatment. Methods: In this retrospective study, we reviewed the medical records of myopic patients who underwent PRK surgery for high astigmatism (>3 diopters [D]) between January 2013 and December 2023. The patients were divided into two groups based on whether the surgeon applied pupillary decentration during surgery. Preoperative, intraoperative, and postoperative parameters were compared between the groups. Adjustments were made to account for differences in baseline characteristics and intraoperative parameters. Results: Overall, the study included 575 eyes from 414 patients, of which 79 eyes were treated with pupil decentration. The pupil-decentered group exhibited significantly preoperative higher myopia (subjective spherical equivalent (SEQ) of −5.30 ± 3.12 D vs. −4.26 ± 2.45 D, p < 0.001) and subjective sphere (−3.40 ± 3.13 D vs. −2.31 ± 2.49 D, p < 0.001). Visual and refractive outcomes, including uncorrected visual acuity (UCVA) of logMAR 0.11 ± 0.77 vs. 0.09 ± 0.72 (p = 0.302), best-corrected visual acuity (BCVA) of 0.07 ± 0.92 vs. 0.07 ± 0.82 (p = 0.982), SEQ (−0.33 ± 0.93 vs. −0.19 ± 0.60D, p = 0.094), sphere (0.02 ± 0.98 vs. 0.15 ± 0.67 D, p = 0.142), cylinder (−0.71 ± 0.48 vs. −0.70 ± 0.55 D, p = 0.894), safety index (1.07 ± 0.27 vs. 1.12 ± 0.31, p = 0.236), and efficacy index (0.99 ± 0.31 vs. 1.07 ± 0.35, p = 0.065), showed no significant differences between the two groups. Postoperative outcomes remained comparable after adjusting for baseline and intraoperative parameters. Conclusions: Our findings suggest that, in myopic patients undergoing high-astigmatic PRK surgery, pupil decentration does not lead to superior postoperative visual and refractive outcomes. This highlights that, in this scenario, surgeons can preserve the efficacy and safety of the procedure even without applying pupil decentration. Full article

In the food industry, food spoilage caused by spores is a pressing scientific challenge that needs to be addressed urgently, and spore germination is a key approach to solving this problem. Studies have shown that peptidoglycan-induced spore germination represents a novel mechanism of action, which can bind to the PASTA domain of the serine/threonine kinase PrkC. However, the signaling mechanism of peptidoglycan-induced spore germination remains unclear. This study focuses on Bacillus subtilis, using pull-down experiments to screen for proteins interacting with PrkC. There are 80 interaction proteins of PrkC that were identified in the spore. GO analysis reveals that PrkC-interacting proteins in the spore are mainly involved in metabolic processes, cell part and catalysis. KEGG results indicate that PrkC-interacting proteins in the spore are mainly involved in RNA degradation, quorum sensing, oxidative phosphorylation, etc. Additionally, proteins are categorized into six groups by function based on events that may be associated with post-germination triggered by peptidoglycan-induced activation of the PrkC signaling pathway, including “stimulate translation initiation” and “ATP synthesis and energy metabolism”. The experimental results provide a theoretical basis for further elucidating the signaling mechanism of PrkC, revealing the signaling pathway of peptidoglycan-induced spore germination, and identifying targeted inducers and repressors of spore germination. Full article

Background: We evaluate the accuracy of intraocular lens (IOL) power calculation in the following formulas—Barrett True-K No History (BTKNH), EVO 2.0 Post-Hyperopic LASIK/PRK (EVO 2.0), Haigis-L, Pearl-DGS, and Shammas (SF)—with patients who have undergone cataract surgery at the Eye Unit of University of Campania Luigi Vanvitelli, Naples, Italy, and had prior hyperopic laser refractive surgery. Methods: A monocentric, retrospective, comparative study, including the charts of patients who had undergone cataract surgery and previous hyperopic laser refractive surgery, was retrospectively reviewed. Patients with no other ocular or systemic disease which might interfere with visual acuity results and no operative complications or combined surgery were enrolled. The mean absolute prediction error (MAE) was calculated for each formula and compared. Subgroup analysis based on the axial length and mean keratometry was performed. Results: A total of 107 patients (107 eyes) were included. The MAE calculated with SF provided less accurate (p < 0.05) results when compared to both BTKNH and EVO 2.0 formulas. The MAE obtained using Haigis-L, EVO 2.0, Pearl-DGS, and BTKNH showed no significant differences. Conclusions: The analysis of the accuracy of the selected formulas shows no clear advantage in using one specific formula in standard cases, but in eyes where it is mandatory to reach the target refraction, SF should be avoided. Full article

Background: Managing post-keratoplasty astigmatism remains challenging. Even though graft viability is the main concern in keratoplasty, astigmatism might hinder vision recovery following a successful corneal transplant. Photorefractive keratectomy (PRK) and topography-guided PRK may be options for correcting refractive errors in patients who underwent keratoplasty. The aim of the study was to compare the results of PRK and topography-guided PRK in patients who had undergone corneal keratoplasty. Methods: This study was conducted at the Chair and Ophthalmology Clinic of the Medical University of Silesia, at the Railway Hospital Katowice, from 2023 to 2024. Patients who underwent penetrating keratoplasty due to keratoconus or corneal scar (post-traumatic and post-inflammatory) with a residual spherical myopic or mixed myopic astigmatic refractive defect were included in this study. The studied patients were divided into two groups: 15 patients underwent PRK and 15 patients underwent topography-guided PRK. Each participant underwent a preoperative examination, including uncorrected visual acuity (UCVA) and best spectacle-corrected visual acuity (BSCVA) measured on the Snellen chart (LCD panel for visual acuity testing Frey CP-400, Optotech Medical, Niepołomnice, Niepołomice, Poland), cycloplegic refraction, corneal pachymetry and topography (Schwind Sirius+, Pentacam), wavefront aberrations (Schwind Peramis, Pentacam), applanation tonometry, and anterior and posterior segment examinations, conducted at baseline and 1, 3, 6, and 12 months. Results: Keratoconus was the most common reason for keratoplasty (80% vs. 60%). Following PRK, the mean KI in group (1) decreased significantly to 43.88 ± 3.64 (p < 0.001), and in the group (2), the mean diopters decreased significantly after the intervention to 46.46 ± 2.80 (p < 0.001). The mean spherical refractive error in group (2) changed significantly after the intervention, reaching −2.72 ± 1.28 D (p < 0.001). The mean cylinder in group (1) changed significantly after PRK to have a mean of −2.75 ± 1.44 D (p < 0.001). Also, in group (2), it changed significantly after the intervention to have a mean of −2.95 ± 1.99 D (p < 0.001). There was a significant increase in both uncorrected visual acuity (UCVA) and best-corrected visual acuity (BCVA) after topography-guided PRK at all the follow-up points of 1, 3, 6, and 12 months (p < 0.001). The mean higher-order corneal aberrations (HOAs) after topography-guided PRK were 1.33 ± 0.50, ranging from 0.22 to 2.34 (p < 0.001). Conclusions: Topography-guided PRK is safer and more effective in correcting aberrations and refractive errors after corneal keratoplasty than regular PRK. Additionally, topography-guided PRK reduces high-order aberrations by utilizing advanced topographic mapping of the cornea, enabling precise customization of the treatment to address individual corneal surface irregularities. Full article

The outermost surface of wool is covered by a scale layer, posing challenges to some steps of fabric processing. This layer, primarily composed of keratin, resists degradation by conventional proteases due to its high disulfide bond content. Protease K, an extracellular serine endo-proteinase derived from Tritirachium album Limber (tPRK), is known for its ability to digest native keratin. However, its limited activity against keratin has restricted its application in wool scale layer treatment. In this study, the substrate-binding pocket of tPRK was engineered, yielding the mutant N162A, which demonstrated an 84% increase in catalytic activity toward keratin. Additionally, the catalytic efficiency (k_cat/K_m) of N162A on keratin improved by 44.52%. Structural analysis indicated that modifications in the substrate-binding pocket reduced steric hindrance during substrate entry while enhancing substrate binding. Additionally, 3.3 mg/mL of amino acids were released within 6 h, which were catalyzed by N162A, with a 61% increase compared to the native tPRK. Moreover, the N162A variant effectively reduced the scale layer thickness without compromising the tensile strength of the wool, maintaining its mechanical properties. The findings provide a sustainable strategy for the wool industry while broadening the scope of biotechnological applications in the textile sector. Full article

This work aimed to evaluate the relative gene expression of the candidate genes psI, psII, isr, utp, and prk involved in the defense response to Black Sigatoka in banana cultivars Calcutta-4, Krasan Saichon, Grand Nain, and Akondro Mainty, by a quantitative real-time PCR. Biotic stress was imposed on 6-month-old plants during five sampling intervals under greenhouse conditions. The psII and isr genes were upregulated for the Calcutta-4- and Krasan Saichon-resistant cultivars, and were validated in this study. For Grande Naine, a susceptible cultivar, there was an early downregulation of the psI, psII, and isr genes and a late upregulation of the psII gene. There was no significant expression of any of the genes for the susceptible cultivar Akondro Mainty. Computational biology tools such as ORFFinder and PlantCARE revealed that the utp gene has more introns and exons and that, in general, cis-elements involved in the response to biotic stress, such as as-1, w-box, and STRE, were detected in the promoter region of the genes studied. Data from this work also support the phenotyping studies of banana cultivars affected by Black Sigatoka in the field. Once validated in promising new hybrids, these genes may be used in marker-assisted selection (MAS) and/or gene-editing techniques. Full article

Objectives: To report a novel application within the USA of excimer ablation for the normalization of central corneal refractive irregularity, combined with higher fluence CXL in the effective management and visual rehabilitation of progressive keratoconus. Methods: 17 consecutive cases with progressive keratoconus were treated with corneal surface excimer laser ablation normalization using topography-guided (Contura) myopic ablation for customized corneal re-shaping with a 6 mm optical zone. The epithelial removal was accounted for by adding a −2.75 diopter correction to this topography-guided normalizing surface ablation followed by a second wavefront-optimized hyperopic excimer treatment of +2.75 diopters also with a 6 mm optical zone. The two sequential excimer ablations applied on the intact epithelium were followed by corneal crosslinking (CXL). Visual acuity, refraction, and keratoconus documentation via keratometry, topography, and pachymetry, as well as endothelial cell density were evaluated over 36 months. Results: Keratoconus stabilized in all cases. The severity and stage of keratoconus determined by the Amsler–Krumeich criteria improved for the OD from an average of 2.2 to 1. The median UDVA showed marked improvement at one-year follow-up (all values in LogMAR), from 0.8 preoperative to 0.3 at 12 months, and was stable through the 3 years at 0.3. The median CDVA increased from 0.5 to 0.1 at 1 year and was stable at 0.1 at 3 years. The average minimal corneal thickness decreased from 466 μm to 396 μm, as recorded the first year postoperatively, and then slightly increased to 405 μm at the 3-year follow-up. Conclusions: We introduce herein the initial clinical data for the use of a novel, off-label therapeutic excimer laser surface ablation application. It was designed to perform both epithelial removal and anterior corneal stroma reshaping and combined with CXL to apply the Athens Protocol CXL with US excimer laser-approved specifications. Full article