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17 pages, 1389 KB  
Article
Kojic Acid Gene Clusters and the Transcriptional Activation Mechanism of Aspergillus flavus KojR on Expression of Clustered Genes
by Perng-Kuang Chang, Leslie L. Scharfenstein, Noreen Mahoney and Qing Kong
J. Fungi 2023, 9(2), 259; https://doi.org/10.3390/jof9020259 - 15 Feb 2023
Cited by 10 | Viewed by 3354
Abstract
Kojic acid (KA) is a fungal metabolite and has a variety of applications in the cosmetics and food industries. Aspergillus oryzae is a well-known producer of KA, and its KA biosynthesis gene cluster has been identified. In this study, we showed that nearly [...] Read more.
Kojic acid (KA) is a fungal metabolite and has a variety of applications in the cosmetics and food industries. Aspergillus oryzae is a well-known producer of KA, and its KA biosynthesis gene cluster has been identified. In this study, we showed that nearly all section Flavi aspergilli except for A. avenaceus had complete KA gene clusters, and only one Penicillium species, P. nordicum, contained a partial KA gene cluster. Phylogenetic inference based on KA gene cluster sequences consistently grouped section Flavi aspergilli into clades as prior studies. The Zn(II)2Cys6 zinc cluster regulator KojR transcriptionally activated clustered genes of kojA and kojT in Aspergillus flavus. This was evidenced by the time-course expression of both genes in kojR-overexpressing strains whose kojR expression was driven by a heterologous Aspergillus nidulans gpdA promoter or a homologous A. flavus gpiA promoter. Using sequences from the kojA and kojT promoter regions of section Flavi aspergilli for motif analyses, we identified a consensus KojR-binding motif to be an 11-bp palindromic sequence of 5′-CGRCTWAGYCG-3′ (R = A/G, W = A/T, Y = C/T). A CRISPR/Cas9-mediated gene-targeting technique showed that the motif sequence, 5′-CGACTTTGCCG-3′, in the kojA promoter was critical for KA biosynthesis in A. flavus. Our findings may facilitate strain improvement and benefit future kojic acid production. Full article
(This article belongs to the Special Issue Genomics Analysis of Fungi)
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12 pages, 2638 KB  
Article
Investigation of Gentamicin Release from Polydopamine Nanoparticles
by Rahila Batul, Abdul Khaliq, Ahmed Alafnan, Mrinal Bhave and Aimin Yu
Appl. Sci. 2022, 12(13), 6319; https://doi.org/10.3390/app12136319 - 21 Jun 2022
Cited by 10 | Viewed by 3238
Abstract
Polydopamine (PDA), being highly reactive in nature, has acquired great attention in multi-disciplinary fields. Owing to its fascinating properties, including its biocompatible, non-toxic and readily bio-degradative nature, we investigated the drug loading and release behavior, using an aminoglycoside antibiotic gentamicin (G) as a [...] Read more.
Polydopamine (PDA), being highly reactive in nature, has acquired great attention in multi-disciplinary fields. Owing to its fascinating properties, including its biocompatible, non-toxic and readily bio-degradative nature, we investigated the drug loading and release behavior, using an aminoglycoside antibiotic gentamicin (G) as a model drug. The gentamicin was loaded into the PDA nanoparticles (NPs) via an in situ polymerization method. The release kinetics of the gentamicin was then studied in pH 3, 5 and 7.4. Two batches with varied gentamicin loadings, G-PDA NPs 1:1 (with approx. 84.1% loaded gentamicin) and G-PDA NPs 0.6:1 (with approx. 72.7% loaded gentamicin), were studied. The drug release data were analyzed by LC–MS. The PDA showed good stability in terms of gentamicin release at alkaline pH over a period of seven days. The negative surface charge of PDA at pH 7.4 makes a strong bond with gentamicin, hence preventing its release from the PDA NPs. However, at pH 5 and 3, the amine groups of PDA are more prone towards protonation, making PDA positively charged, hence the repulsive forces caused the gentamicin to detach and release from the G-PDA NPs. Consequently, approx. 40% and 55% drug release were observed at pH 5 and 3, respectively, from the G-PDA NPs 1:1. However, the drug released from G-PDA NPs 0.6:1 was found to be one half as compared to the G-PDA NPs 1:1, which is obvious to the concentration gradient. These findings suggested that the in situ loading method for gentamicin could provide drug release over a period of seven days, hence defending the drug’s efficacy and safety challenges. Furthermore, two kinetic models, namely the Ritger–Peppas and Higuchi models, were implemented to determine the drug release kinetics. Curve fitting analysis supported our findings for the drug release kinetics which are followed by PDA structural changes in response to pH. Full article
(This article belongs to the Section Nanotechnology and Applied Nanosciences)
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16 pages, 3422 KB  
Article
Controlled Transcription of Regulator Gene carS by Tet-on or by a Strong Promoter Confirms Its Role as a Repressor of Carotenoid Biosynthesis in Fusarium fujikuroi
by Julia Marente, Javier Avalos and M. Carmen Limón
Microorganisms 2021, 9(1), 71; https://doi.org/10.3390/microorganisms9010071 - 29 Dec 2020
Cited by 6 | Viewed by 3605
Abstract
Carotenoid biosynthesis is a frequent trait in fungi. In the ascomycete Fusarium fujikuroi, the synthesis of the carboxylic xanthophyll neurosporaxanthin (NX) is stimulated by light. However, the mutants of the carS gene, encoding a protein of the RING finger family, accumulate large [...] Read more.
Carotenoid biosynthesis is a frequent trait in fungi. In the ascomycete Fusarium fujikuroi, the synthesis of the carboxylic xanthophyll neurosporaxanthin (NX) is stimulated by light. However, the mutants of the carS gene, encoding a protein of the RING finger family, accumulate large NX amounts regardless of illumination, indicating the role of CarS as a negative regulator. To confirm CarS function, we used the Tet-on system to control carS expression in this fungus. The system was first set up with a reporter mluc gene, which showed a positive correlation between the inducer doxycycline and luminescence. Once the system was improved, the carS gene was expressed using Tet-on in the wild strain and in a carS mutant. In both cases, increased carS transcription provoked a downregulation of the structural genes of the pathway and albino phenotypes even under light. Similarly, when the carS gene was constitutively overexpressed under the control of a gpdA promoter, total downregulation of the NX pathway was observed. The results confirmed the role of CarS as a repressor of carotenogenesis in F. fujikuroi and revealed that its expression must be regulated in the wild strain to allow appropriate NX biosynthesis in response to illumination. Full article
(This article belongs to the Special Issue Microbial Pigments)
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22 pages, 3064 KB  
Article
Computer-Aided Engineering Environment for Designing Tailored Forming Components
by Tim Brockmöller, Renan Siqueira, Paul C. Gembarski, Iryna Mozgova and Roland Lachmayer
Metals 2020, 10(12), 1589; https://doi.org/10.3390/met10121589 - 27 Nov 2020
Cited by 14 | Viewed by 3867
Abstract
The use of multi-material forming components makes it possible to produce components adapted to the respective requirements, which have advantages over mono-material components. The necessary consideration of an additional material increases the possible degrees of freedom in product and manufacturing process development. As [...] Read more.
The use of multi-material forming components makes it possible to produce components adapted to the respective requirements, which have advantages over mono-material components. The necessary consideration of an additional material increases the possible degrees of freedom in product and manufacturing process development. As a result, development becomes more complex and special expert knowledge is required. To counteract this, computer-aided engineering environments with knowledge-based tools are increasingly used. This article describes a computer-aided engineering environment (CAEE) that can be used to design hybrid forming components that are produced by tailored forming, a process chain developed in the Collaborative Research Center (CRC) 1153. The CAEE consists of a knowledge base, in which the knowledge necessary for the design of tailored forming parts, including manufacturer restrictions, is stored and made available. For the generation of rough and detailed design and for elaboration the following methods are used. The topology optimization method, Interfacial Zone Evolutionary Optimization (IZEO), which determines the material distribution. The design of optimized joining zone geometries, by robust design. The elaboration of the components by means of highly flexible computer-aided design (CAD) models, which are built according to the generative parametric design approach (GPDA). Full article
(This article belongs to the Special Issue Hybrid Bulk Metal Components)
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13 pages, 5233 KB  
Article
Polydopamine Nanosphere with In-Situ Loaded Gentamicin and Its Antimicrobial Activity
by Rahila Batul, Mrinal Bhave, Peter J. Mahon and Aimin Yu
Molecules 2020, 25(9), 2090; https://doi.org/10.3390/molecules25092090 - 30 Apr 2020
Cited by 122 | Viewed by 7947
Abstract
The mussel inspired polydopamine has acquired great relevance in the field of nanomedicines, owing to its incredible physicochemical properties. Polydopamine nanoparticles (PDA NPs) due to their low cytotoxicity, high biocompatibility and ready biodegradation have already been widely investigated in various drug delivery, chemotherapeutic, [...] Read more.
The mussel inspired polydopamine has acquired great relevance in the field of nanomedicines, owing to its incredible physicochemical properties. Polydopamine nanoparticles (PDA NPs) due to their low cytotoxicity, high biocompatibility and ready biodegradation have already been widely investigated in various drug delivery, chemotherapeutic, and diagnostic applications. In addition, owing to its highly reactive nature, it possesses a very high capability for loading drugs and chemotherapeutics. Therefore, the loading efficiency of PDA NPs for an antibiotic i.e., gentamicin (G) has been investigated in this work. For this purpose, an in-situ polymerization method was studied to load the drug into PDA NPs using variable drug: monomer ratios. Scanning electron microscope (SEM), Fourier-transform infrared spectroscopy (FTIR), and X-ray photoelectron spectroscopy (XPS) confirmed the successful loading of drug within PDA NPs, mainly via hydrogen bonding between the amine groups of gentamicin and the hydroxyl groups of PDA. The loading amount was quantified by liquid chromatography–mass spectrometry (LC-MS) and the highest percentage loading capacity was achieved for G-PDA prepared with drug to monomer ratio of 1:1. Moreover, the gentamicin loaded PDA NPs were tested in a preliminary antibacterial evaluation using the broth microdilution method against both Gram-(+) Staphylococcus aureus and Gram-(−) Pseudomonas aeruginosa microorganisms. The highest loaded G-PDA sample exhibited the lowest minimum inhibitory concentration and minimum bactericidal concentration values. The developed gentamicin loaded PDA is very promising for long term drug release and treating various microbial infections. Full article
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12 pages, 1762 KB  
Article
Performance Evaluation of Asphalt Rubber Mixture with Additives
by Xianpeng Cheng, Yamin Liu, Wanyan Ren and Ke Huang
Materials 2019, 12(8), 1200; https://doi.org/10.3390/ma12081200 - 12 Apr 2019
Cited by 14 | Viewed by 4019
Abstract
Crumb rubber, as a recycled material used in asphalt mixture, has gained more attention in recent years due to environmental benefits and the advantages of its pavement, such as excellent resistance to cracking, improved durability, less road maintenance, lower road noise, etc. However, [...] Read more.
Crumb rubber, as a recycled material used in asphalt mixture, has gained more attention in recent years due to environmental benefits and the advantages of its pavement, such as excellent resistance to cracking, improved durability, less road maintenance, lower road noise, etc. However, the high-temperature performance of mixture with crumb rubber does not perform well. In order to improve the performance, this paper examined the effect of additives on the laboratory performance of asphalt rubber Stone Matrix Asphalt (AR-SMA) with additives. Three groups of AR-SMA: no additives, Styrene–Butadiene–Styrene (SBS) and Granular Polymer Durable additive (GPDa) were included, with no additives as a control group. Each group was investigated at three asphalt rubber content (ARC): 6.4%, 6.9%, 7.4% with regard to high-temperature and fatigue properties. The results show that with increasing ARC, the high-temperature performance of mixture without additive decreases, and the high-temperature performance increases first and then decreases for SBS and GPDa. Moreover, the rutting resistance of AR-SMA with GPDa at 6.9% ARC performs best. Under the condition of mixtures with appropriate ARC, AR-SMA with GPDa has higher fatigue life and sensitivity to fatigue cracking than the control group. Simultaneously, the fatigue performance of AR-SMA with GPDa is not as significant as that without additive with increasing ARC. In a word, GPDa is a good choice to improve the performance of AR-SMA. However, it should be noted that optimal asphalt content of AR-SMA mixtures with GPDa is higher than that of traditional mixtures. Full article
(This article belongs to the Special Issue Sustainability in Construction and Building Materials)
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15 pages, 2045 KB  
Article
Self-Tuning Threshold Method for Real-Time Gait Phase Detection Based on Ground Contact Forces Using FSRs
by Jing Tang, Jianbin Zheng, Yang Wang, Lie Yu, Enqi Zhan and Qiuzhi Song
Sensors 2018, 18(2), 481; https://doi.org/10.3390/s18020481 - 6 Feb 2018
Cited by 16 | Viewed by 5569
Abstract
This paper presents a novel methodology for detecting the gait phase of human walking on level ground. The previous threshold method (TM) sets a threshold to divide the ground contact forces (GCFs) into on-ground and off-ground states. However, the previous methods for gait [...] Read more.
This paper presents a novel methodology for detecting the gait phase of human walking on level ground. The previous threshold method (TM) sets a threshold to divide the ground contact forces (GCFs) into on-ground and off-ground states. However, the previous methods for gait phase detection demonstrate no adaptability to different people and different walking speeds. Therefore, this paper presents a self-tuning triple threshold algorithm (STTTA) that calculates adjustable thresholds to adapt to human walking. Two force sensitive resistors (FSRs) were placed on the ball and heel to measure GCFs. Three thresholds (i.e., high-threshold, middle-threshold andlow-threshold) were used to search out the maximum and minimum GCFs for the self-adjustments of thresholds. The high-threshold was the main threshold used to divide the GCFs into on-ground and off-ground statuses. Then, the gait phases were obtained through the gait phase detection algorithm (GPDA), which provides the rules that determine calculations for STTTA. Finally, the STTTA reliability is determined by comparing the results between STTTA and Mariani method referenced as the timing analysis module (TAM) and Lopez–Meyer methods. Experimental results show that the proposed method can be used to detect gait phases in real time and obtain high reliability when compared with the previous methods in the literature. In addition, the proposed method exhibits strong adaptability to different wearers walking at different walking speeds. Full article
(This article belongs to the Special Issue Sensors for Gait, Posture, and Health Monitoring)
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