Search Results (87)

Signaling mediated by CLAVATA3/EMBRYO SURROUNDING REGION-RELATED (CLE) peptides and their receptors is essential for plants to adapt to abiotic stress. To address the global issue of drought-induced growth inhibition and mortality in poplar (Populus spp.), this study investigated the function of the PtrCLE1A gene from Populus trichocarpa Torr. et Gray in drought tolerance regulation. We employed gene cloning, expression vector construction, and genetic transformation of poplar, combined with bioinformatics analysis, subcellular localization, phenotypic observation, physiological index measurement, and gene expression analysis. The results demonstrated that both PtrCLE1A and PtrCLE1B encode pre-propeptides containing a signal peptide, with an identical mature peptide sequence (RLSPGGPDPRHH), and their putative receptors are PtrCLV1/2. Furthermore, the PtrCLE1A pre-propeptide was localized around the plasma membrane in tobacco (Nicotiana benthamiana Domin) mesophyll cells, consistent with its predicted function. PtrCLE1A and PtrCLE1B are primarily expressed in the roots and xylem of P. trichocarpa. Additionally, only the PtrCLE1A promoter contained drought-responsive cis-elements, and its expression was induced by drought stress in root, xylem, and leaf tissues of P. trichocarpa. Overexpression of the PtrCLE1A gene in Populus tomentosa Carrière (triploid) significantly increased adventitious root length under osmotic stress. Overexpression lines exhibited 22.00% to 22.92% longer adventitious roots than EV lines at 50/100 mM mannitol, and 65.12% to 73.17% longer at 150 mM mannitol. The OE lines also exhibited higher photosynthetic capacity and instantaneous water use efficiency (iWUE), along with reduced membrane damage under drought conditions, indicating enhanced drought resistance. This study provides new genetic resources and a theoretical foundation for molecular breeding of drought-tolerant poplar. Full article

Directional asymmetry (DA) is a widespread yet often overlooked feature of animal morphology. Here, we report a consistent right-biassed asymmetry in the crystalline lenses of the thornback ray Raja clavata. Across 71 individuals sampled from the Strait of Sicily, 24% exhibited lens asymmetry, and in all cases, the right lens was larger. This pattern, supported by binomial and distributional tests, represents the first evidence of ocular DA in this species. Body size and age emerged as the primary correlates of asymmetry: the odds of exhibiting DA increased significantly with body weight, whereas the effects of sex and sampling site were not significant. The prevalence of asymmetry thus appears to rise with age and ontogenetic growth. Two non-exclusive mechanisms may account for this pattern. First, the association with positive allometry (b = 3.33) suggests that right-lens enlargement could reflect a functional or developmental lateralisation, potentially conferring a visual or ecological advantage to larger individuals. Alternatively, the same right-lens bias could arise through an age-related pathological process, such as oxidative or osmotic lens swelling preceding cataract formation, consistent with asymmetric physiological wear. These findings reveal a novel case of morphological lateralisation in an elasmobranch and highlight the need for comparative, histological, and functional approaches to disentangle adaptive asymmetry from lateralised senescence in the visual system of R. clavata. Full article

Most respiratory diseases are driven by excessive airway inflammation and oxidative stress, yet current therapies often lack durable efficacy or are unsafe. Host-defense peptides, commonly enriched in animal venoms, offer diverse, target-selective scaffolds for new therapeutics. In this study, we aimed to discover a novel bioactive peptide with therapeutic potential on respiratory tract damage by utilizing Nephila clavata venom gland transcriptome. Using in silico analysis and machine learning-based functional prediction, we designed a peptide, NC-CV, expected to have dual anti-inflammatory and antioxidant activities with low cytotoxicity. In experimental validation, NC-CV improved human bronchial epithelial BEAS-2B cell viability under lipopolysaccharide (LPS) exposure while reducing LPS-induced pro-inflammatory cytokine expression and intracellular reactive oxygen species (ROS) generation. Mechanistic studies and molecular docking simulations indicated that NC-CV prevents toll-like receptor 4 signaling activation, suppressing nuclear factor κB and mitogen-activated protein kinase pathways. Moreover, the antioxidant activity of NC-CV was primarily based on direct intracellular ROS scavenging rather than the induction of endogenous antioxidant enzymes. Collectively, these findings demonstrated that the venom-derived peptide NC-CV disrupts the self-reinforcing cycle involving inflammatory signaling and oxidative stress in airway epithelium, highlighting its promise as a therapeutic candidate for respiratory disease. Full article

Coralligenous assemblages are among the most diverse habitats of the Mediterranean Sea, yet those of the north-eastern basin remain understudied despite their vulnerability to human impacts and climate change. We applied a multimodal underwater sensing approach to map coralligenous formations, assess gorgonian populations and evaluate the effects of marine litter in a conservation-priority area (NE Aegean Sea, Greece). Side-scan sonar enabled seafloor mapping and guided targeted Remotely Operated Vehicle (ROV) surveys. ROV-based distance sampling and imagery provided quantitative data on Eunicella cavolini and Paramuricea clavata, including density, size structure, and injuries, alongside systematic documentation of marine litter. Gorgonians formed monospecific ecological facies, segregated by location—P. clavata occurred deeper than E. cavolini. Densities were low (E. cavolini: 0.35 colonies m⁻², P. clavata: 1.46 colonies m⁻²) and small colonies (<10 cm) were rare, suggesting limited recruitment. However, the presence of large colonies indicates stable environmental conditions that support long-term persistence, as reproductive output increases with colony size. Colony injuries were minor, but marine litter was abundant, dominated by fishing lines and ropes entangled with gorgonians and sponges. These findings highlight the value of acoustic–optical integration for non-destructive monitoring and provide essential baselines for conservation under EU directives. Full article

Tomato fruit malformation causes substantial yield and economic losses, but its molecular mechanisms are not well understood. This study compared floral traits of WT ‘QT57’ and malformed-fruit mutant ‘QT2’, integrated transcriptomic data, and qRT-PCR analysis to screen key candidate genes, and analyzed the pectinase gene family. The results found the ‘QT2’ mutant differed from WT ‘QT57’ in flower and fruit development. Expression analysis of CLAVATA-WUSCHEL pathway genes preliminarily validated the compensatory mechanism of SlCRCa and SlCRCb in ‘QT2’ malformed fruit. Six pectinase genes were identified as key candidates via RNA-seq and qRT-PCR analysis. Transcriptomic and qRT-PCR analyses of the pectinase gene family revealed their potential role in regulating tomato fruit malformation. Family analysis showed 34 pectinase genes distributed unevenly across 12 chromosomes. Subcellular localization confirmed SlPL7 in the nucleus and SlPME9 in the cell membrane/endoplasmic reticulum. The PL and PME genes were evolutionarily close, suggesting a potential functional overlap. Gibberellin-responsive elements were found in most pectinase genes. Pectinase genes may regulate tomato fruit malformation through the gibberellin-WUS pathway, carbohydrate metabolism, or cell wall metabolic disorder. This pathway provides new targets gene for the precise regulation of fruit malformation and offers significant reference value for practical production. Full article

Michelia ‘Xin’ is an evergreen rare ornamental tree species that undergoes FBD only once but blooms twice a year. However, the molecular mechanisms controlling its FBD process remain largely unknown. This study characterized the FBD process and delved into the key molecular regulatory mechanisms through transcriptomic and metabolomic analyses of developing flower buds. FBD in Michelia ‘Xin’ was characterized into five stages, including vegetative (T1), floral meristem transition (T2), tepal primordia differentiation (T3), stamen primordia differentiation (T4), and pistil primordia differentiation (T5). Analyses revealed a stage-specific metabolic and transcriptional regulation of FBD, with increasing numbers of differential metabolites and a decreasing number of DEGs from T1 to T5. Most phytohormone and transcription factor-related DEGs were highly induced from T2. The down-regulation of dormancy-associated protein homologs and CONSTANS-LIKE proteins associated with significant induction of flowering-promoting factor, CLAVATA3, trichome birefringence-like, and GRAVITROPIC IN THE LIGHT proteins was essential for the induction and reproductive organs’ development. Porphyrin biosynthesis, chlorophyll a-b binding proteins, DNA replication, flavonoid biosynthesis, and starch and sucrose metabolism were also significantly induced from T2. Key pivotal candidate genes were screened out. Our results provide fundamental resources for dissecting the molecular network regulating FBD and molecular-assisted flowering control in Michelia ‘Xin’. Full article

Spiders and other arthropods can sometimes consume others of their kind, and this is most often associated with mating activity, whereby females cannibalize males during or after mating, or during mating attempts. Nonsexual cannibalism is less common but may be associated with food availability or territorial aggression. In the Southeastern United States, a non-native orb-weaving spider, Trichonephila clavata (the “jorō spider”), is expanding its range. Prior lab experiments indicated this species to be “shy” compared to other native spiders, based on behavioral reactions to stimuli. Here, we report descriptive observations and photo-documentation of nonsexual cannibalism by this species, including from anecdotal observations, plus findings from controlled pairings of spiders, both in the lab and in natural webs in the field. In the cases where cannibalism was witnessed, it involved one female biting and killing another, typically after a short fight. When two females of a similar size were placed together in a container (n = 25 trials), fights ensued 40% of the time. When females of different sizes were paired (n = 27 trials), fights happened 18% of the time, and the larger females were not always the aggressor. Across all the lab trials (n = 52), six bouts (9%) led to the direct killing of one female. In field trials where two females were placed on an empty web (n = 14 trials), we observed one fight (7%) where the aggressor ended up killing and wrapping the other spider in silk. Given that some of these instances happened away from any web, these observations imply that the aggression is not necessarily an act of territoriality. The intraspecific aggression could arise when females are provoked or stressed, which deserves more study. Full article

The leaf plastochron serves as an indicator of the rate of leaf appearance, biomass accumulation, and branch number, while also impacting plant architecture and seed yield. However, research on the leaf plastochron of crops remains limited. In this study, 2116C exhibited a rapid leaf plastochron compared to ZH18 during both rosette and bud periods. There were significant positive correlations among the leaf plastochron and primary branch number of the F₂ populations (r ranging from 0.395 to 0.635, p < 0.01). Genetic analyses over two years demonstrated that two equally dominant genes might govern the leaf plastochron. Through bulk segregant analysis sequencing (BSA-seq), three novel genomic intervals were identified on chromosomes A02 (9.04–9.48 Mb and 13.52–13.66 Mb) and A04 (19.84–20.14 Mb) of ZS11 and Darmor-bzh reference genomes. By gene functional annotations, single-nucleotide variation (SNV) analyses, transcriptome data from parents, genetic progeny, and natural accessions, we identified ten candidate genes within the intervals, including FLOWERING LOCUS T, RGL1, MYB-like, CYP96A8, BLH3, NIT2, ASK6, and three CLAVATA3/ESR (CLE)-related genes. These findings lay the molecular foundation for further exploration into the leaf plastochron and the implications in plastochron-related breeding in rapeseed. Full article

CLAVATA3 (CLV3)/endosperm surrounding region (CLE) peptides have been reportedly involved in plant growth and development, as well as responses to abiotic stresses. However, the stress resilience of most CLE genes in cotton remains largely unknown. Here, induced expression pattern analysis showed that GhCLE25 was obviously responsive to osmotic and salt treatments, indicating that GhCLE25 was involved in abiotic stress tolerance. Furthermore, silencing GhCLE25 or the exogenous application of CLE25p effectively led to reduced and enhanced drought tolerance, respectively, as indicated by the activities of the plants’ POD, SOD, CAT, and MDA contents, as well as their height and fresh weight. We found that the knockdown of GhCLE25 promoted seedling growth and development, with a higher plant height and fresh weight in GhCLE25-silenced plants in comparison to control plants. In addition, a comparative transcriptome analysis of TRV:00 versus TRV:GhCLE25 and Mock versus CLE25p revealed that the CLE25-mediated signaling pathway is mainly involved in defense response and phytohormone signaling. Collectively, these findings indicate diverse roles of CLE25 in regulating plant growth and response to environmental stimuli and highlight the potential utilization of CLE25 to improve drought stress in modern agriculture via CLE25p spraying. Full article

The peptide ligands of the CLAVATA3/EMBRYO SURROUNDING REGION-RELATED (CLE) family have been previously identified as essential signals for both short- and long-distance communication in plants, particularly during stem cell homeostasis, cell fate determination, and growth and development. To date, most studies on the CLE family have focused on model plants and especially those involving stem and apical meristems. Relatively little is known about the role of CLE peptides in tall trees and other plant meristems. In this review, we summarize the role of CLE genes in regulating plant Root Apical Meristem (RAM), Shoot Apical Meristem (SAM), Procambium, Leaf and Floral Meristem (FM), as well as their involvement in multiple signaling pathways. We also highlight the evolutionary conservation of the CLE gene family and provide a comprehensive summary of its distribution across various plant developmental tissues. This paper aims to provide insights into novel regulatory networks of CLE in plant meristems, offering guidance for understanding intercellular signaling pathways in forest trees and the development of new plant organs. Full article

The Jorō spider (Trichonephila clavata (L. Koch): Araneae: Araneidae), an invasive species from Asia, and native orbweaving spiders were censused at 25 forest sites in the Atlanta, Georgia, region at the forefront of the Jorō spider’s spread from 2022 through 2024. The Jorō spider was found in all 25 sites in all three years, doubling in abundance each year. In 2022, the number of Jorō spiders found was 444 or 16.34 per hour of census. This doubled in 2023 to 859 or 30.54 per hour. The Jorō numbers doubled again in 2024 to 1713 or 59.14 per hour. This contrasts markedly with the seven species of native orbweavers found during the censuses, which declined by ca. 40% each year. In 2022, 52 or 1.72 individuals per hour of six native orbweaver species were found at 18 sites. In 2023, the number dropped to 32 or 1.06 individuals per hour of six species found at 11 sites. In 2024, the number further declined to 18 or 0.55 individuals of six species found at eight sites. The Jorō spider’s spread and rapid increase in abundance may disrupt trophic networks and negatively influence the abundance of both native orbweavers and flying insect species. Full article

Laccases are synthesized by a diverse range of fungi. Nevertheless, despite the industrial significance of laccases, the regulatory mechanism governing laccase production has been relatively understudied. This research aims to explore the regulatory function of the methyltransferase CcLaeA in laccase biosynthesis using the newly isolated fungal strain Curvularia clavata J1. Through CRISPR-Cas9-mediated gene disruption, the deletion of CclaeA led to a 1.5-fold increase in extracellular laccase activity in the ΔCclaeA mutant when compared to the wild-type strain. This finding indicates that CcLaeA functions as a transcriptional repressor of laccase biosynthesis. Transcriptomic analysis demonstrated that CcLaeA does not directly regulate the expression of laccase genes. Instead, it modulates genes associated with hydrolases and peptidases. This modulation potentially reduces the enzymatic degradation of laccase at the protein level. This study significantly enhances our understanding of fungal laccase regulation. By establishing a connection between the deletion of CclaeA and the improvement of enzyme stability and activity, this research offers practical insights for engineering fungal strains to optimize laccase yields for bioremediation and biofuel applications. Furthermore, the integration of targeted gene knockout with multi-omics validation sets up a methodological framework for investigating regulatory networks in non-model fungi. This framework is expected to accelerate the development of sustainable biocatalysts, thereby contributing to the advancement of biotechnology in various industrial sectors. Full article

Intercellular communication mediated by CLAVATA3/EMBRYO SURROUNDING REGION-RELATED (CLE) peptides and their receptors is crucial for plant development and environmental adaptation. In this study, 45 and 89 CLEs were identified in Populus tomentosa and Populus alba × Populus glandulosa, respectively, and, together with the 52 CLEs in Populus trichocarpa, the chromosome localization, gene and protein characteristics, collinearity and gene duplication events, cis-acting regulatory elements in promoters and evolutionary relationships of CLEs in these three poplar species were analyzed. The CLEs of three poplar species were divided into four subfamilies. Among them, the CLEs in subfamilies I, II and IV were A-type CLEs, while those in subfamily III were B-type CLEs. During the evolutionary process of poplar, the selection pressure faced by whole-genome duplication or segmental duplication was purifying selection, and the duplication events led to the expansion of the CLE family in poplar. The exogenous addition of a certain concentration of poplar CLE13 peptides inhibits the root growth of Arabidopsis thaliana and poplar and simultaneously reduces the expression levels of ARFs and LBDs in the roots. In addition, drought stress induces the expression of PtrCLE13A. The overexpression of preCLE13A significantly enhances the osmotic and drought tolerance in Populus tomentosa. These results have provided valuable information for further research on the molecular mechanisms of CLE peptide signaling pathways in the woody model plant poplar regarding plant growth and stress resistance. Full article

Cadmium (Cd) is a pervasive heavy metal pollutant released into the environment through industrial activities such as mining, smelting, and agricultural runoff. This study aimed to investigate the molecular and metabolic impacts of Cd exposure on the silk glands of Trichonephila clavata, a species renowned for producing silk with exceptional mechanical properties. Cd accumulation in spider bodies and silk glands was significantly higher in the low- and high-Cd groups compared to controls, with a dose- and time-dependent increase. Oxidative stress markers, including superoxide dismutase, glutathione peroxidase, peroxidase, and malondialdehyde, were significantly elevated, indicating a robust stress response. Proteomic analysis identified 2498 proteins, with 227 differentially expressed between Cd-treated and control groups. Key metabolic pathways, including glutathione metabolism, cysteine and methionine metabolism, and amino acid biosynthesis, were significantly disrupted. Downregulation of enzymes such as glutathione synthase and S-adenosylmethionine synthetase highlighted oxidative imbalance and impaired sulfur metabolism, indicating disruptions in redox homeostasis and energy metabolism critical for silk production. These findings demonstrate that Cd exposure alters oxidative stress responses, disrupts key metabolic pathways, and impairs silk gland functionality at multiple molecular levels. This study advances the understanding of the impact of heavy metal stress on spider physiology and provides a foundation for further research on the ecological implications of Cd contamination. Full article

De novo root regeneration is the process by which adventitious roots form around the wound site from wounded or detached plant organs. The de novo root regeneration process has been widely exploited in cutting technology used for vegetative propagation. Here, we employed detached leaf explants from Arabidopsis thaliana to form adventitious roots for studying the process of de novo root regeneration. GUS staining showed that the expression of CLAVATA3/EMBRYO SURROUNDING REGION-RELATED26(CLE26) was gradually increased surrounding the wound site of leaf explants during adventitious root formation. Semi-thin sections further showed that the expression pattern of CLE26 was closely linked to the formation of adventitious roots. Next, genetic analyses confirmed that the CLE26 gene was involved in de novo root regeneration. Furthermore, RNA sequencing (RNA-seq) of the leaf explants revealed that stress-related genes might be involved in CLE26-mediated adventitious root formation. Specifically, genes associated with the hydrogen peroxide catabolic process and oxidative stress response were predominantly upregulated in the cle26 mutant. In contrast, genes involved in the response to salicylic acid were largely downregulated in the cle26 mutant. Overall, our study indicates that the mutation in CLE26 might upregulate the expression of genes involved in reactive oxygen species metabolism or suppress the expression of genes associated with salicylic acid synthesis, thus promoting the formation of adventitious roots. These findings suggest that CLE26 is a potential candidate for the genetic improvement of adventitious rooting in cuttings. Full article