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Authors = D. Wilson Freshwater ORCID = 0000-0003-0125-3133

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38 pages, 6948 KiB  
Article
DNA Barcoding of Red Algae from Bocas del Toro, Panamá, with a Description of Gracilaria bocatorensis sp. nov. and G. dreckmannii sp. nov. (Gracilariales, Gracilariaceae)
by Maycol Ezequiel Madrid Concepcion, Rachel Collin, Kenneth S. Macdonald, Amy C. Driskell, Suzanne Fredericq, Brian Wysor and D. Wilson Freshwater
Diversity 2025, 17(4), 222; https://doi.org/10.3390/d17040222 - 23 Mar 2025
Cited by 1 | Viewed by 1030
Abstract
Bocas del Toro is an archipelago on the Caribbean coast of Panamá, recognized as a biodiversity hotspot. While marine red macroalgae in the Western Atlantic are well studied, the marine flora of Panamá, particularly Bocas del Toro, remains underexplored using DNA barcoding. This [...] Read more.
Bocas del Toro is an archipelago on the Caribbean coast of Panamá, recognized as a biodiversity hotspot. While marine red macroalgae in the Western Atlantic are well studied, the marine flora of Panamá, particularly Bocas del Toro, remains underexplored using DNA barcoding. This study documents the diversity of marine red macroalgae in the region using COI-5P barcoding to identify species, detect cryptic diversity, and assess the presence of invasive and amphi-isthmian species. Specimens collected in 2008 and 2009 yielded 179 COI-5P sequences. Barcode Index Numbers (BINs) were assigned to 82 genetic clusters, many lacking GenBank matches, suggesting potential new species. Morphology and phylogenetic analyses of rbcL, UPA, and cox1 confirmed two new species of Gracilaria (G. bocatorensis sp. nov. and G. dreckmannii sp. nov.). Despite advances in DNA barcoding, red macroalgal diversity in Panamá remains understudied, particularly Corallinales, where rbcL sequences are lacking. No introduced or amphi-isthmian species were detected. This study adds 16 new species records for the Caribbean coast of Panamá, emphasizing the importance of DNA barcoding in biodiversity research. Full article
(This article belongs to the Special Issue DNA Barcodes for Evolution and Biodiversity—2nd Edition)
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23 pages, 11490 KiB  
Article
Intertidal Species of Gelidium from the Temperate Coast of Argentina
by María Emilia Croce and D. Wilson Freshwater
Diversity 2024, 16(7), 399; https://doi.org/10.3390/d16070399 - 12 Jul 2024
Cited by 1 | Viewed by 2208
Abstract
The Gelidiales comprises economically valuable species of marine red algae that are found globally, in cold, temperate, and warm waters. Although there is much known about the species diversity and distribution of this order, it remains underexplored on the temperate coast of the [...] Read more.
The Gelidiales comprises economically valuable species of marine red algae that are found globally, in cold, temperate, and warm waters. Although there is much known about the species diversity and distribution of this order, it remains underexplored on the temperate coast of the Southwestern Atlantic Ocean. This study aimed to update current knowledge about the intertidal Gelidiaceae found on the temperate coast of Argentina using a combination of rbcL data and morpho-anatomical studies and to evaluate the morphological variability among species related to habitat characteristics. Three morphotypes were found at the six localities surveyed; two were identified as different morphologies of Gelidium crinale and one was identified as Gelidium carolinianum. Populations of both species were widespread and coexisted extensively from 37° S to 40° S along the Argentinean coast. G. carolinianum is newly reported in the Southern Hemisphere, indicating it has a disjunct distribution that includes the North Atlantic and Mediterranean as well. Molecular data confirmed previous reports of G. crinale in Argentina, a species that exhibited broad morphological variability among sites. The development of both spermatangia and carpogonia on the same fertile gametophyte thalli in G. crinale and G. carolinianum was described for the first time and demonstrated that they are monoecious. These findings shed light on the diversity and biogeography of Gelidiales from temperate South America. Full article
(This article belongs to the Section Marine Diversity)
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11 pages, 1555 KiB  
Article
A Demonstration of DNA Barcoding-Based Identification of Blade-Form Ulva (Ulvophyceae, Chlorophyta) Species from Three Site in the San Juan Islands, Washington, USA
by Gabrielle M. Kuba, Brenda Carpio-Aguilar, Jason Eklund and D. Wilson Freshwater
Diversity 2022, 14(11), 899; https://doi.org/10.3390/d14110899 - 24 Oct 2022
Cited by 2 | Viewed by 3167
Abstract
Marine macroalgae are foundation species that play a critical ecological role in coastal communities as primary producers. The macroalgal genus Ulva is vital in intertidal communities, serving as a food source and shelter for organisms, but these species also form environment-damaging nuisance blooms. [...] Read more.
Marine macroalgae are foundation species that play a critical ecological role in coastal communities as primary producers. The macroalgal genus Ulva is vital in intertidal communities, serving as a food source and shelter for organisms, but these species also form environment-damaging nuisance blooms. This project aimed to demonstrate the utility of DNA barcoding for determining the diversity of Ulva species in the San Juan Islands (Washington, DC, USA). Blade-form Ulva (Ulvophyceae) specimens were collected from the lower, mid, and upper intertidal zones at three sites experiencing different levels of wave exposure. Sequences of plastid-encoded tufA were generated for each specimen and cluster analyses revealed the presence of four species at the collection sites. Two species were positively identified as Ulva expansa and Ulva fenestrata based on their sharing identical tufA sequences with those of the holotype specimens. Sequences of plastid-encoded rbcL and the nuclear-encoded ribosomal ITS regions of representative specimens were used to identify the other two species as Ulva prolifera and Ulva californica based on their similarity to epitype and topotype specimen sequences, respectively. Additional types of specimen sequencing efforts are needed to increase the number of Ulva species that can be accurately identified and realize their true biodiversity. Full article
(This article belongs to the Special Issue Aquatic Organisms Research with DNA Barcodes)
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9 pages, 3566 KiB  
Article
Gracilaria parva sp. nov. (Gracilariales, Rhodophyta) a Diminutive Species from the Tropical Eastern Pacific
by D. Wilson Freshwater, Bo Williamson, Paul W. Gabrielson and Margarita Brandt
Taxonomy 2022, 2(1), 48-56; https://doi.org/10.3390/taxonomy2010004 - 10 Jan 2022
Cited by 4 | Viewed by 3677
Abstract
DNA sequencing of the plastid encoded rbcL gene supported by morpho-anatomical features reveals Gracilaria parva sp. nov. from Panama and Ecuador in the tropical eastern Pacific Ocean. In the rbcL phylogram, G. parva occurs in a clade sister to the western [...] Read more.
DNA sequencing of the plastid encoded rbcL gene supported by morpho-anatomical features reveals Gracilaria parva sp. nov. from Panama and Ecuador in the tropical eastern Pacific Ocean. In the rbcL phylogram, G. parva occurs in a clade sister to the western Atlantic species G. galatensis. Morphologically and anatomically, G. parva is distinguished from two similar, described tropical eastern Pacific species, G. brevis and G. veleroae by its small size, to 2.5 cm tall with branch widths mostly <2 mm occasionally to 4 mm, and by its two to three cell layered cortex. Gracilaria brevis and G. veleroae are taller, have wider branches, and a one cell layered cortex. DNA sequencing is needed to resolve the many diminutive species in the tropical eastern Pacific, particularly those occurring in turf communities. DNA sequencing of historical type specimens from the 19th and 20th centuries is also needed to correctly apply names in this region. Full article
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12 pages, 2798 KiB  
Article
DNA Sequence Analyses Reveal Two New Species of Caloglossa (Delesseriaceae, Rhodophyta) from the Skin of West Indian Manatees
by D. Wilson Freshwater, Cathryn E. Miller, Thomas A. Frankovich and Michael J. Wynne
J. Mar. Sci. Eng. 2021, 9(2), 163; https://doi.org/10.3390/jmse9020163 - 6 Feb 2021
Cited by 9 | Viewed by 2951
Abstract
Epizoic macroalgae collected from the skin of West Indian manatees included specimens of the red algal family Delesseriaceae. Morphological and rbcL sequence analyses indicated that these specimens represented two novel species of Caloglossa. One species, described here as Caloglossa kamiyana Freshwater, [...] Read more.
Epizoic macroalgae collected from the skin of West Indian manatees included specimens of the red algal family Delesseriaceae. Morphological and rbcL sequence analyses indicated that these specimens represented two novel species of Caloglossa. One species, described here as Caloglossa kamiyana Freshwater, Cath.E. Miller & Frankovich sp. nov., had been previously studied and recognized as part of the C. ogasawaraensis species complex. The rbcL sequence divergence between C. kamiyana and other taxa within the complex ranged from 4.6–5.3%, and tetrasporangial mother cells are cut off from the lateral pericentral cells by oblique divisions instead of transverse divisions as in C. ogasawaraensis. The second species was resolved as a closely related sister species to C. fluviatilis, with a minimum interspecific sequence divergence of 2.0%. It was morphologically indistinguishable from C. fluviatilis except for one potential character—mostly one, instead of multiple rhizoids, developing from rhizoid-bearing pericentral and marginal wing cells. It is herein described as Caloglossa manaticola Freshwater, Cath.E. Miller & Frankovich sp. nov. Full article
(This article belongs to the Special Issue Diversity, Taxonomy and Conservation of Marine Algae)
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