Next Article in Journal
TLR4-Mediated Inflammatory Responses Regulate Exercise-Induced Molecular Adaptations in Mouse Skeletal Muscle
Next Article in Special Issue
ABA Mediates Plant Development and Abiotic Stress via Alternative Splicing
Previous Article in Journal
The Competitive Endogenous RNA (ceRNA) Regulation in Porcine Alveolar Macrophages (3D4/21) Infected by Swine Influenza Virus (H1N1 and H3N2)
Previous Article in Special Issue
Comprehensive Analysis of Carotenoid Cleavage Dioxygenases Gene Family and Its Expression in Response to Abiotic Stress in Poplar
 
 
Search for Articles:
Title / Keyword
Author / Affiliation / Email
Journal
Article Type
 
 
Advanced Search
 
Section
Special Issue
Volume
Issue
Number
Page
 
Journals
IJMS
Volume 23
Issue 3
10.3390/ijms23031876
ijms-logo
Submit to this Journal Review for this Journal Propose a Special Issue
► Article Menu

Article Menu

share Share announcement Help format_quote Cite question_answer Discuss in SciProfiles thumb_up
...
Endorse textsms
...
Comment
first_page
settings
Order Article Reprints
Font Type:
Arial Georgia Verdana
Font Size:
Aa Aa Aa
Line Spacing:
Column Width:
Background:
Review

Molecular Aspects of Seed Development Controlled by Gibberellins and Abscisic Acids

by
Akiko Kozaki
1,2,3,* and
Takuya Aoyanagi
1
1
Graduate School of Science and Technology, Shizuoka University, Ohya 836, Suruga-ku, Shizuoka 422-8021, Japan
2
Course of Bioscience, Department of Science, Graduate School of Integrated Science and Technology, Shizuoka University, Ohya 836, Suruga-ku, Shizuoka 422-8021, Japan
3
Department of Biological Science, Faculty of Science, Shizuoka University, Ohya 836, Suruga-ku, Shizuoka 422-8021, Japan
*
Author to whom correspondence should be addressed.
Int. J. Mol. Sci. 2022, 23(3), 1876; https://doi.org/10.3390/ijms23031876
Submission received: 27 December 2021 / Revised: 31 January 2022 / Accepted: 2 February 2022 / Published: 7 February 2022
(This article belongs to the Special Issue Advances in the Molecular Mechanisms of Abscisic Acid and Gibberellins Functions in Plants 2.0)
Browse Figures
Versions Notes

Abstract

:
Plants have evolved seeds to permit the survival and dispersion of their lineages by providing nutrition for embryo growth and resistance to unfavorable environmental conditions. Seed formation is a complicated process that can be roughly divided into embryogenesis and the maturation phase, characterized by accumulation of storage compound, acquisition of desiccation tolerance, arrest of growth, and acquisition of dormancy. Concerted regulation of several signaling pathways, including hormonal and metabolic signals and gene networks, is required to accomplish seed formation. Recent studies have identified the major network of genes and hormonal signals in seed development, mainly in maturation. Gibberellin (GA) and abscisic acids (ABA) are recognized as the main hormones that antagonistically regulate seed development and germination. Especially, knowledge of the molecular mechanism of ABA regulation of seed maturation, including regulation of dormancy, accumulation of storage compounds, and desiccation tolerance, has been accumulated. However, the function of ABA and GA during embryogenesis still remains elusive. In this review, we summarize the current understanding of the sophisticated molecular networks of genes and signaling of GA and ABA in the regulation of seed development from embryogenesis to maturation.

1. Introduction

Seeds are the products of the evolution of spermatophytes that enable the maintenance and spread of their lineages by providing nutrition for embryo growth and resistance to unfavorable environmental conditions through the state of dormancy. Until the environment is suitable for germination, seeds spend variable lengths of time in the dormancy stage.
The seed development process can be divided into two main phases, embryogenesis (cell division and morphogenesis) and maturation. Embryogenesis includes the formation and structural development of the mature seeds consisting of an embryo, endosperm, and maternal seed coat.
As a consequence of complex developmental processes that start from the end of embryogenesis and terminate with the state of dormancy, seed maturation occurs. The maturation stage is characterized by accumulation of storage compound, acquisition of desiccation tolerance, arrest of growth, and entry into dormancy. Seeds can germinate under favorable environmental conditions only after dormancy is broken.
Complex gene networks regulate seed development and germination, and diverse phytohormones are involved in these processes [1,2]. Gibberellin (GA) and abscisic acids (ABA) are recognized as primary hormones that antagonistically regulate seed development (including dormancy) and germination [2,3]. In early embryogenesis, auxin plays a major role in establishing the embryonic body plan via the effects of apical-basal polarity/pattern formation and vascular development. Together with auxin, cytokinins are linked to growth promotion by cell division, development, and differentiation. Brassinosteroids regulate the ovule number and size and shape of seeds, and also participate in seed germination by antagonizing the inhibitory effect of ABA [1,4].
Until now, impressive progress has been achieved in the understanding of the molecular network regulating the seed development, metabolism, and signaling pathways of ABA and GA in seed maturation and germination. However, the function of ABA and GA during embryogenesis still remains elusive.
In this review, we summarize the mechanism underlying the regulation of seed development (from embryogenesis to maturation) and the function of the phytohormones GA and ABA in seed development. Since there are several reviews on the function of other phytohormones in seed development in the literature, we focus on these two hormones [1,4,5,6].

2. The Level of ABA and GA during Seed Development

2.1. ABA Level during Seed Development

In seed development in Arabidopsis, a peak of ABA level in the whole silique is observed in the middle of development (around nine days after flowering (DAF)), and after 12 DAF, ABA increases until late stage of development (21 DAF) [7,8,9]. ABA was detected mostly in the seeds during the middle stage and in the envelopes during the late stage of maturation [7] (Figure 1).
It has been demonstrated that nine-cis epoxycarotenoid dioxygenase (NCED) is the key regulatory enzyme in the ABA biosynthetic pathway [11]. Among five NCED genes in Arabidopsis, AtNCED6 and AtNCED9 contribute to a high level of ABA at mid-seed development, while AtNCED2 and AtNCED3 contribute to the accumulation of ABA in the later stages of whole silique [9,12].
ABA accumulated in both phases is synthesized mainly in zygotic tissues. However, when zygotic tissues, but not maternal tissues, are deficient in ABA, ABA synthesized in maternal tissue is translocated into the embryos of zygotic tissues [7]. The main role of ABA synthesized in zygotic tissues is the induction and/or maintenance of seed dormancy [7,13,14]. On the other hand, maternal ABA affects the thickness of the mucilage layer released from mature seeds on imbibition in Arabidopsis [13].
In the seed development of wheat, there are two peaks of ABA level [15,16]. The ABA synthesized during the late phase of seed development (about 35–40 days after pollination (DAP)) is associated with the level of dormancy [15]. On the other hand, rice and triticale have one peak of ABA level in their seed development. In rice seeds, the accumulation of ABA involved in the induction of dormancy occurs during the early and middle stages of seed development (10–20 DAP), earlier than in wheat [17,18]. In triticale grains, peak ABA accumulation was around 35 DAP, before a significant loss of water [19].
Catabolism of ABA occurs by conversion from ABA to phaseic acid (PA), which is catalyzed by a cytochrome P450 monooxygenase (P450) encoded by CYP707As [20].

2.2. ABA Signaling

Three major components are involved in ABA signaling: pyrabactin resistance 1/pyrabactin-like/regulatory components of ABA receptors (PYR/PYL/RCAR), protein phosphatase 2Cs (PP2Cs), and SNF1-related protein kinase 2s (SnRK2s). In the absence of ABA, the activities of SnRK2s is inhibited by PP2Cs through dephosphorylation of their kinase activation loops, while in the presence of ABA, the ABA receptors PYR/PYL/RCAR form a complex with PP2C, which inhibits the phosphatase activity of PP2C and, as a result, SnRK2 is activated [21,22]. The activated form of SnRK2 subsequently activates ABRE-binding protein/ABRE-binding factor (AREB/ABF) transcription factors, which subsequently activate the transcription of ABA-responsive genes [22]. The ubiquitin-proteosome system (UPS) is also involved in ABA signaling. In the absence of ABA, ABA receptors PYR/PYL/RCAR, SnRK2s, and ABREB/ABF transcription factors are degraded via the UPS, which secures the inhibition of the ABA response. On the other hand, PP2C is degraded via the UPS in the presence of ABA leading to the enhancement of the ABA response [23,24].

2.3. GA Level during Seed Development

Among more than 130 GAs identified in plants, fungi, and bacteria, only four of them, GA1, GA3, GA4, and GA7, are thought to function as bioactive hormones. And among them, GA1 and GA4 are the major bioactive GAs in many plants including Arabidopsis. GA1and GA4 are synthesized via the 13-hydroxy pathway and the non-13-hydroxy pathway, respectively. The latter is the predominant pathway in Arabidopsis [25,26].
In Arabidopsis, GA4 and GA1 was accumulated in flower buds, flowers, and early developing silique (3 DAF), and in the mid-seed development (around 9 DAF), respectively [7,10,27] (Figure 1).
The conversion of intermediates to bioactive GAs is catalyzed by two enzymes, GA20-oxidase (GA20ox) and GA3ox in the last steps of the GA biosynthesis. Another enzyme, GA 2-oxidase (GA2ox), catalyzes the conversion of bioactive GAs to inactive catabolites [28]. The level of bioactive GA is controlled primarily by these three enzymes. Bioactive GAs are synthesized in developing seeds by all four AtGA3ox and by AtGA3ox1 in replums and funiculi in developing Arabidopsis siliques [27]. In developing pea seeds, PsGA20oxs and PsGA3oxs were involved in the synthesis of bioactive Gas [29].

2.4. GA Signaling

GA signaling in plants is induced when bioactive GA is perceived by its receptor GIBBERELLIN INSENSITIVE DWARF1 (GID1) [30,31]. DELLA proteins are negative regulators of GA signaling [32]. When GA binds to GID1, the formation of the GA-GID1-DELLA complex is promoted, and the complex is associated with F-box protein, the central component of SCFSLY1/GID2 E3 ubiquitin ligase, which leads to DELLA degradation via the ubiquitin 26S proteasome pathway [33,34,35]. As a result, GA response genes are activated.

3. Function of ABA and GA in Seed Development

3.1. Function of GA and ABA in Embryogenesis

Embryogenesis starts from a single cell zygote and ends when all embryo structures have been formed. In Arabidopsis, embryo development is divided into three phases: the earliest proembryo stage, is characterized by embryo polarity establishment; early embryogenesis is characterized by the embryo morphology shifting from the early globular stage to the heart stage (most of the structures have formed at this stage); and late embryogenesis is characterized by embryo expansion (elongation of cotyledon and axis) and maturation (storage compound accumulation, desiccation, and dormancy) [36]. The last phase, late embryogenesis, corresponds to the early stage of the maturation phase of seed development.
Several essential genes for embryogenesis, including YUCCA (YUC) family members, which are auxin biosynthesis genes, and LEAFY COTYLEDON genes (LEC1, LEC2, and FUSCA3), have been identified [37,38,39,40,41]. These LEAFY COTYLEDON genes also function in the seed maturation stage (described later).
For normal seed development, GAs are required. The evidence that GAs are necessary for seed development has been provided by the analysis of GA-deficient mutant in pea [42,43]. Overexpression of the gene for GA 2-oxidase (GA2ox) from pea in Arabidopsis seeds caused seed abortion and inhibition of pollen tube growth, demonstrating that active GAs in the endosperm are essential for normal seed development [44,45]. Similarly, overexpression of GA2ox from tomato in tomato fruit led to the reduction of fruit weight, seed number, and germination rate [46].
The maternal tissues, especially the seed coat, play an important role in embryonic development [47,48,49]. The plant proembryo is composed of an embryo-proper domain and a suspensor domain, and the suspensor is the major channel for maternal-to-proembryo communication. The transport of nutrients and signals from the mother to embryo is essential for embryonic development and plant fertility [50,51]. However, the degeneration of the suspensor through programmed cell death (PCD) occurs at a very early stage of embryonic development in plants [52]. In tobacco plant (Nicotiana tabacum), the suspensor PCD is established by the antagonistic action of two proteins; a protease inhibitor, cystatin NtCYS, and its target, cathepsin H-like protease NtCP14 [52]. Recently, it has been reported that a DELLA protein, NtCRF (NtCYS regulative factor 1) regulates suspensor PCD in tobacco by promoting the expression of NtCYS. GA generated in the micropylar endothelium trigger the suspensor PCD by suppression of NtCYS expression via degradation of NtCRF [53].
On the other hand, maternal ABA plays a significant role in embryo development and seed maturation in tobacco (Nicotiana plumbaginifolia), although it does not affect dormancy induction [54].

3.2. Gene Networks in the Maturation Phase

Following the embryogenesis phase, the maturation phase begins. In Arabidopsis, the embryo growth phase starts at the torpedo stage (around 7 DAF) and ends when the seed sac is filled with a mature embryo. During the growth phase, the volume ratio of embryo and endosperm is reversed. At the end of the growth phase, the endosperm is reduced to one cell layer while the embryo volume is increased. The cell division of the embryo increases at the beginning of the growth phase and then is arrested by the end of the phase [55]. During the maturation phase, accumulation of seed reserves, maturation and degradation of chloroplasts, acquisition of desiccation tolerance, and dormancy occur before water content decreases and the embryo enters a quiescent state.
In the case of cereals, the endosperm continues to increase the volume to accumulate storage materials and cover other important roles in embryo development and seed organization [1].
A complex network of transcription factors regulates seed maturation. Among these, the LAFL regulatory network is the central network. The LAFL genes include the AFL clade of B3 domain plant-specific transcription factors (ALF-B3), FUSCA3 (FUS3), ABA INSENSITIVE 3 (ABI3), LEAFY COTYLEDON 2 (LEC2) [38,39,56], and the HAP3 subunit of the CCAAT-binding transcription factors (CBF or NF-Y), LEC1, and LEC1-LIKE (L1L) [57,58]. Mutation of the LAFL genes affects many aspects of seed maturation: decreased dormancy at maturation [55], reduced expression of seed storage materials [59], reduced desiccation tolerance, and a low level of ABA content [60,61]. The LAFL network regulates several genes involved in modulation of various aspects of plant development besides seed development: genes for zinc finger factor PEI1, APETALA2 (AP2) family factor BABY BOOM (BBM), NAC factor CUP-SHAPED COTYLEDON1 (CUC1), and MADS box factor FLOWERING LOCUS C (FLC) [61].
AFL factors activate the target genes through the RY cis-element that is recognized by the B3-DNA binding domain [62,63,64,65,66]. LEC1 and L1L bind to the CCAAT DNA motif as a subunit of the NF-Y complex [57,67]. Genome-wide analysis of LEC1 binding sites in the upstream region of target genes in Arabidopsis and soybean revealed that, besides the CCAAT motif, G-Box, ABA-responsive promoter element (ABRE)-like, RY, and BPC1 cis-elements were enriched in the promoters of genes regulated during seed maturation, indicating that LEC1 regulates the target genes by interacting with several other kinds of transcription factors [68,69,70].
Genetic analysis shows that the LAFL genes organize a network with complex mutual interactions among LAFL genes (Figure 2). LEC1 can activate ABI3, FUS3, and LEC2 expression, while ectopic expression of LEC2 can up-regulate LEC1, ABI3, and FUS3 [69,71,72]. ABI3 and FUS3 positively regulate each other and their own expression [69,73]. Moreover, L1L is regulated by FUS3 [74]. A recent ChIP analysis indicated that LEC1 regulates L1L [75], whereas FUS3 regulates LEC1, FUS3, and ABI3 [76].
In addition to the LAFL genes, ABI5 and ABI5-related bZIP transcription factors (bZIP), which bind to ABRE, are involved in the regulation of seed maturation. ABI5 is a key player in ABA signaling [77]. An important subset of LAFL-regulated genes during seed maturation includes LATE EMBRYOGENESIS ABUNDANT (LEA) genes, which have both RY and ABRE motifs in their promoters and are regulated by a combination of ABI3 and ABI5-related bZIP transcription factors [78,79]. Therefore, ABA signaling is integrated into the LAFL network by ABI5 and its related bZIP factors via physical interaction with the N-terminal COAR (co-activator/co-repressor) domain of ABI3 [78,79]. ABREs are also found in the promoters of target genes of other LAFL factors, suggesting that other components of the LAFL are potentially co-regulated by ABA [73,75,76].
In Arabidopsis, FUS3 expression is increased by exogenously-introduced ABA [72], and FUS3 induces the increase of ABA [8]. Thus, FUS3 and ABA are positive regulators of each other [41]. Furthermore, the expression of FUS3 was found to be able to be positively regulated by auxin [8].
During seed maturation, GA’s level should be down-regulated. GA’s level is regulated by FUS3 and LEC2, which repress the enzymes involved in bioactive GA synthesis [8,80].
As mentioned above, LAFL genes play important roles in embryogenesis [70,81]. Recent research showed that GA signaling facilitates embryo development by promoting auxin accumulation in late embryogenesis via LEC1 in Arabidopsis. The GA signaling repressors, DELLAs, interact with LEC1, which promotes the expression of the YUC gene that facilitate embryogenesis by promoting the accumulation of auxin. GA triggers the degradation of DELLAs to relieve their repression of LEC1, leading to the activation of genes essential genes for embryogenesis [10].

3.3. Accumulation of Seed Storage Products

During seed maturation, seed storage compounds needed for germination and initial seedling growth and development, such as seed storage proteins (SSP), lipids, and carbohydrates, are accumulated, and ABA is involved in this process [21,82]. Mutations in ABA signaling, such as PYL and SnRK2, often exhibit reduced seed storage products [83,84,85,86]. Inactivation of SnRK2.6 results in reduction of seed oil content, while overexpression of SnRK2.6 increases overall seed products [84]. SnRK2s triple mutant (snrk2,2/3/6) and pyl duodecuple mutant exhibited lower levels of seed storage products such as 12S globulin [83,85]. The starch biosynthesis in maize and rice is regulated synergistically by sucrose and ABA [87,88,89].
The LAFL genes are involved in the regulation of storage material accumulation [90]. LEC1 and FUS3 control the accumulation of ABI3 and function with each other to regulate the accumulation of storage proteins (including Arabidopsis 2S albumin storage protein 3 (At2S3) and Cruciferin C (CRC)), anthocyanins synthesis, and accumulation of chlorophyll and lipid during maturation in an ABA-dependent manner [68,72,91,92,93]. LEC1 activates CRC as well, via a direct interaction with bZIP67 [74].
FUS3 negatively regulates the expression of TRANSPARENT TESTA GLABRA1 (TTG1), which encodes a transcription factor that suppresses the accumulation of seed storage proteins and oils in Arabidopsis [94]. A mutant of ttg1 is characterized by a dramatic increase in storage reserves, such as oil and SSP [95]. FUS3 may lead to the accumulation of storage reserves by suppressing TTG1 [94]. FUS3, in combination with LEC2, also induces the expression of WRINKLED 1 (WRI1), which encodes AP2 transcription factor and plays roles in the regulation of sugars and oil content in seeds by increasing the gene expression for fatty acid synthesis and sugar degradation [74,96]. Together with repressing TTG1 expression and enhancing WRI1 expression, FUS3 promotes the accumulation of storage oils. This storage oil accumulation is also regulated by LEC1 and AFL genes through activation of WRI1 [93]. LEC2 regulates oil and protein accumulation by activating the expression of OLE1, encoding oleosin and genes encoding 2S and 12S storage proteins [62,63,97,98].
Other factors than LAFL genes are also involved in the accumulation of storage materials. bZIP67, together with L1L and NUCLEAR FACTOR-YC2 (NF-YC2), regulate FATTY ACID DESATURASE 3 (FAD3), which functions in the storage of omega-3 fatty acid during maturation [99]. The DOG1-LIKE4 (DOGL4) gene, whose expression is induced by ABA, regulates the expression of some seed storage proteins including CRC, albumins, and oleosins during seed maturation [100].

3.4. Desiccation Tolerance and De-Greening

Desiccation tolerance (DT) is an important trait that seeds have to survive prolonged periods until favorable conditions for germination are present for. In many plants, the DT process during seed maturation is intricately linked to loss of chlorophyll (chl), namely de-greening. In terms of commercial products, the presence of chlorophyll in mature seeds can be an undesirable characteristic that can affect seed maturation and quality [60,82].
In Arabidopsis, the abi3–6 mutant shows a lack of de-greening, and ABI3 was found to control embryo de-greening through regulating the expression of STAY GREEN (SGR) genes (AtSGR1 and AtSGR2), which are orthologs of the SGR gene encoded by Mendel’s I locus [101,102,103]. The seeds of the triple mutant snrk2.2/3/6 also have greenish-brown seed coats, which indicate that ABA signaling is involved in the de-greening process [83].
LAFL genes play important roles in the DT acquisition process. A mutation in LEC1, ABI3, or FUS3 drastically affects DT, indicating that all three of these regulators are required to activate DT [104], while a mutation in LEC2 does not show this effect [69,97].
To acquire DT, a set of genes, including genes encoding protective proteins such as LEA [105,106] and HEAT SHOCK PROTEINs (HSPs) [107], and other protective enzymes, compounds, and antioxidants are required [3,108,109,110,111]. LEA proteins are highly hydrophilic glycine-rich proteins that display antioxidant, metal ion binding, membrane and protein stabilization, hydration buffering, and DNA and RNA interaction properties [112,113,114,115].
The expression of the LEA gene is regulated by ABI3 and ABI5 [116,117,118,119]. ABI3 also regulates the expression of seed-specific heat shock factor HSFA9 [120]. LEA and HSP gene expression is increased by DELAY OF GERMINATION (DOG1) through ABI5/ABI3, and enhances the storage of N-rich compounds in the seed, which promotes the seed’s dormancy and viability [117,118,119,121].
Although a lec2 mutant did not show DT reduction [97,122], LEC2 is involved in DT establishment. LEC2 affects the expression of LEA, EM1, and EM6 genes by induction of the expression of the gene for ENHANCED EM LEVEL (EEL) bZIP transcription factor [62], which is a negative regulator of those EM proteins in Arabidopsis. EEL competes with a positive regulator of EMS, ABI5, by competing for their promoter sites [118].
In Medicago truncatula and pea (Pisum sativum), ABI3, ABI4, and ABI5 were identified as major hubs to regulate DT acquisition to control genes involved in raffinose family oligosaccharide (RFO) metabolism, LEA proteins synthesis, and photosynthesis associated nuclear genes [106,109,123]. ABI5 also regulates de-greening and seed longevity in legumes [123].

3.5. Induction and Maintenance of Primary Seed Dormancy

Dormancy, a temporary quiescent state, is the important characteristic of seeds of wild plant species to avoid germination under unfavorable environmental conditions and ensure the initiation of a next generation. Whereas in the case of domesticated species, seeds with fast and uniform germination have been selected for rapid growth to achieve good crop yield. On the other hand, lack of seed dormancy is undesirable because it may cause preharvest sprouting (PHS), a serious problem in cereal crops, and non-dormant mutants can have reduced seed longevity [16,124].
At the end of seed maturation after storage products are synthesized, dehydration starts, and de novo ABA is stored, seed dormancy is achieved [55]. Several pieces of evidence have established that ABA is a key regulator in this process [3,14,124]. Mutation in ABA biosynthesis, sensing, and signaling affect seed dormancy [12,83,85,125,126].
In Arabidopsis, mutants of AtNCED6 and AtNCED9 show decreased ABA levels and dormancy in mature, dry seeds [12]. Other ABA-deficient mutants, such as aba1 and aba2/3, also show reduced dormancy levels [82,125,126]. In wheat, mutations in the two homologs of TaABA8’ OH1 (TaABA8’OH1A and TaABA8’OH1D; AtCYP707 homolog) resulted in an increase of ABA and an enhanced degree of dormancy [127]. TsNCED1 is also related to a higher ABA content and higher resistance to PHS [19].
In Arabidopsis, AtMYB96 directly activates ABA synthesis genes (AtNCED2,5,6, and 9) and inactivates GA biosynthesis genes (AtGA3ox1 and AtGA20ox1) to induce primary seed dormancy [128]. AtABI4 deepens seed dormancy through direct interaction with promoter regions of AtNECD6 to increase ABA biosynthesis and, with promoter regions of AtGA2ox7, a GA inactivation gene, to inhibit GA accumulation [129,130].
A mutation in ABA signaling, such as in the rice ospyl septuple and snrk2.2/3/6 triple mutant, also leads to premature germination in rice and Arabidopsis [83,131].
Members of LAFL genes are involved in the achievement of dormancy. Growth arrest of embryo in mature seeds is controlled by FUS3, LEC1, and LEC2, whose mutants all fail in complete cessation of embryo growth and exhibit premature germination [39,98,132].
The maize Viviparous 1 (Vp1) gene, an ortholog of the ABI3 of Arabidopsis, was one of the key ABA signaling components first identified and characterized. A mutation in Vp1 leads to PHS and disruption of embryo maturation in maize [133,134]. Vp1 genes of wheat, rice, and sorghum are also associated with the level of dormancy and sensitivity to ABA and PHS [135,136,137]. Members of LAFL genes are regulated by the VP8 encoding of a putative peptidase in maize [138]. The mutations in the VP8 homolog gene PLASTOCHRON3/COLIATH (PLA3/GO) in rice and ALTERDMERISTEM PROGRAM 1 (AMP1) in Arabidopsis show a reduced dormancy phenotype [139].
ABI5 is also important for the induction of dormancy during wheat and pea seed maturation [123,140,141]. In sorghum bicolor, SbABI4 and SbABI5 enhance the transcription of SbGA2ox3 through directly binding to its promoter, and accordingly prolong seed dormancy [142].
Two major dormancy genes, DOG1 and REDUCED DORMANCY 5 (RDO5), have been identified that seem to function independently of the plant hormones, including ABA [122,143]. RDO5 is a member of the PP2C protein phosphatase family, but does not show phosphatase activity [143], while DOG1 is a protein of unknown function [122]. Mutations in DOG1 and RDO5 completely abolish or reduce seed dormancy, respectively [122,143]. Genetic analysis revealed DOG1 and ABA are both required for normal seed dormancy [82,122,144].
DOG1 interacts with four phosphatases and two of them are belong to clade A of type 2C protein phosphatase, ABA-HYPERSENSITIVE GERMINATION 1 (AHG1), and AHG3. The ABA and DOG1 pathways converge at the level of PP2C phosphatases: DOG1 inhibits AHG1 and AHG3, while ABA inhibits other PP2CAs and AHG3. By inhibiting PP2C phosphatases, ABA and DOG1 promote and maintain dormancy [145,146]. DOG1 is also required for multiple aspects of seed maturation, partially by interfering with ABA signaling components [121].
SEED DORMANCY 4 (OsSDR4) is considered as a regulator involved in seed dormancy with an unknown function in rice [147]. In Arabidopsis, SDR4-LIKE (AtSDR4L) regulates dormancy release and germination through regulation of DOG1 and RGA-LIKE2 (RGL2 encoding DELLA protein) in the GA pathway [148]. A recent study speculated that AtODR1 (for reversal of rdo5), an ortholog of OsSDR4, acts together with bHLH57 and functions upstream of AtNCED6 and AtNCED9 to control ABA synthesis and seed dormancy in Arabidopsis [149].
In addition to gene regulation networks, other regulation, such as protein phosphorylation and chromatin remodeling, is involved in the regulation of dormancy. RAF-like MAPKKKs, RAF10/11 can phosphorylate SnRK2 and ABFs (ABRE binding factors) to influence seed dormancy [150,151]. A member of the histone deacetylation complex in Arabidopsis, SIN3-like 1 (SNL1), interacts with HISTONE DEACETYLASE 19 (HDA19) to modulate the ABA signaling pathway to promote seed dormancy [152]. Several regulators, including HISTONE MONOUBIQUITINATION (HUB1: C3HC4-RING finger protein) and REDUCED DORMANCY 2 (RDO2: transcription elongation factor TFIIS), are involved in the regulation of seed dormancy [153,154].

4. Conclusions and Future Perspectives

ABA and GA play important roles in seed development and germination. Most attention has been paid to the functions of these hormones in the induction, maintenance, and breaking of dormancy and germination [2,3,16,155]. In Arabidopsis seed, one of the GA level peaks is at the late stage of embryogenesis as well that of ABA level, during the growth phase of maturation, indicating GA plays an important role at this stage [7,10,27]. However, the detailed function of GA in embryogenesis has remained elusive. A recent finding shed light on the mechanism of GA signaling in the regulation of embryogenesis: GA signaling regulates late embryogenesis via LEC1 activation [10]. Moreover, GA has been revealed to be a maternal-to-proembryo communication signal to control the embryonic suspensor PCD [53].
These recent findings show that DELLA proteins play important roles in the integration of the GA signal with other signals, such as PCD or auxin synthesis [10]. Because DELLA proteins interact with many kinds of proteins and are involved in the various aspects of signal transduction [156,157], novel functions of GA signaling through DELLA proteins in seed development might be found in the future.
Although the importance of maternal ABA in embryogenesis in tobacco was reported [54], the detailed function of ABA in embryogenesis has not been clarified. It has been reported that ABA is required for formation of the somatic embryo, induced by auxin [158]. Auxin promotes the expression of ABI3, which induces embryo identity genes through AUXIN RESPONSE FACTOR (ARF) genes activation [158]. Similarly, auxin controls seed dormancy through stimulation of ABA signaling by inducing ABI3 expression [159]. Interaction between ABA and auxin signaling has functions in many aspects of plant development [160]. Further research will reveal the detailed functions of ABA in embryogenesis.
In this review, we focus on the function of ABA and GA in seed development. However, besides GA and ABA, there is elaborate crosstalk among phytohormone signaling during seed development. Further research on the crosstalk among signaling of ABA, GA, and other hormones will provide a more complete mechanism of the regulation of seed development.

Funding

This research received no external funding.

Institutional Review Board Statement

Not applicable.

Informed Consent Statement

Not applicable.

Data Availability Statement

Not applicable.

Conflicts of Interest

The authors declare that there is no conflict of interest.

References

  1. Locascio, A.; Roig-Villanova, I.; Bernardi, J.; Varotto, S. Current perspectives on the hormonal control of seed development in Arabidopsis and maize: A focus on auxin. Front. Plant Sci. 2014, 5. [Google Scholar] [CrossRef] [PubMed] [Green Version]
  2. Shu, K.; Liu, X.-D.; Xie, Q.; He, Z.-H. Two Faces of One Seed: Hormonal Regulation of Dormancy and Germination. Mol. Plant 2016, 9, 34–45. [Google Scholar] [CrossRef] [PubMed] [Green Version]
  3. Finch-Savage, W.E.; Leubner-Metzger, G. Seed dormancy and the control of germination. New Phytol. 2006, 171, 501–523. [Google Scholar] [CrossRef] [PubMed]
  4. Matilla, A.J. Auxin: Hormonal Signal Required for Seed Development and Dormancy. Plants 2020, 9, 705. [Google Scholar] [CrossRef]
  5. Figueiredo, D.D.; Köhler, C. Auxin: A molecular trigger of seed development. Genes Dev. 2018, 32, 479–490. [Google Scholar] [CrossRef] [Green Version]
  6. Cao, J.; Li, G.; Qu, D.; Li, X.; Wang, Y. Into the Seed: Auxin Controls Seed Development and Grain Yield. Int. J. Mol. Sci. 2020, 21, 1662. [Google Scholar] [CrossRef] [Green Version]
  7. Kanno, Y.; Jikumaru, Y.; Hanada, A.; Nambara, E.; Abrams, S.R.; Kamiya, Y.; Seo, M. Comprehensive hormone profiling in developing Arabidopsis seeds: Examination of the site of ABA biosynthesis, ABA transport and hormone interactions. Plant Cell Physiol. 2010, 51, 1988–2001. [Google Scholar] [CrossRef] [Green Version]
  8. Gazzarrini, S.; Tsuchiya, Y.; Lumba, S.; Okamoto, M.; McCourt, P. The transcription factor FUSCA3 controls developmental timing in Arabidopsis through the hormones gibberellin and abscisic acid. Dev. Cell 2004, 7, 373–385. [Google Scholar] [CrossRef] [Green Version]
  9. Okamoto, M.; Kuwahara, A.; Seo, M.; Kushiro, T.; Asami, T.; Hirai, N.; Kamiya, Y.; Koshiba, T.; Nambara, E. CYP707A1 and CYP707A2, which encode abscisic acid 8′-hydroxylases, are indispensable for proper control of seed dormancy and germination in Arabidopsis. Plant Physiol. 2006, 141, 97–107. [Google Scholar] [CrossRef] [Green Version]
  10. Hu, Y.; Zhou, L.; Huang, M.; He, X.; Yang, Y.; Liu, X.; Li, Y.; Hou, X. Gibberellins play an essential role in late embryogenesis of Arabidopsis. Nat. Plants 2018, 4, 289–298. [Google Scholar] [CrossRef]
  11. Nambara, E.; Marion-Poll, A. Abscisic acid biosynthesis and catabolism. Annu. Rev. Plant Biol. 2005, 56, 165–185. [Google Scholar] [CrossRef] [PubMed] [Green Version]
  12. Lefebvre, V.; North, H.; Frey, A.; Sotta, B.; Seo, M.; Okamoto, M.; Nambara, E.; Marion-Poll, A. Functional analysis of Arabidopsis NCED6 and NCED9 genes indicates that ABA synthesized in the endosperm is involved in the induction of seed dormancy. Plant J. 2006, 45, 309–319. [Google Scholar] [CrossRef] [PubMed]
  13. Karssen, C.; Brinkhorst-Van der Swan, D.; Breekland, A.; Koornneef, M. Induction of dormancy during seed development by endogenous abscisic acid: Studies on abscisic acid deficient genotypes of Arabidopsis thaliana (L.) Heynh. Planta 1983, 157, 158–165. [Google Scholar] [CrossRef] [PubMed]
  14. Nambara, E.; Okamoto, M.; Tatematsu, K.; Yano, R.; Seo, M.; Kamiya, Y. Abscisic acid and the control of seed dormancy and germination. Seed Sci. Res. 2010, 20, 55–67. [Google Scholar] [CrossRef]
  15. Suzuki, T.; Matsuura, T.; Kawakami, N.; Noda, K. Accumulation and leakage of abscisic acid during embryo development and seed dormancy in wheat. Plant Growth Regul. 2000, 30, 253–260. [Google Scholar] [CrossRef]
  16. Tuan, P.A.; Kumar, R.; Rehal, P.K.; Toora, P.K.; Ayele, B.T. Molecular Mechanisms Underlying Abscisic Acid/Gibberellin Balance in the Control of Seed Dormancy and Germination in Cereals. Front. Plant Sci. 2018, 9. [Google Scholar] [CrossRef] [Green Version]
  17. Liu, Y.; Fang, J.; Xu, F.; Chu, J.; Yan, C.; Schläppi, M.R.; Wang, Y.; Chu, C. Expression patterns of ABA and GA metabolism genes and hormone levels during rice seed development and imbibition: A comparison of dormant and non-dormant rice cultivars. J. Genet. Genom. 2014, 41, 327–338. [Google Scholar] [CrossRef]
  18. Gu, X.Y.; Foley, M.E.; Horvath, D.P.; Anderson, J.V.; Feng, J.; Zhang, L.; Mowry, C.R.; Ye, H.; Suttle, J.C.; Kadowaki, K.; et al. Association between seed dormancy and pericarp color is controlled by a pleiotropic gene that regulates abscisic acid and flavonoid synthesis in weedy red rice. Genetics 2011, 189, 1515–1524. [Google Scholar] [CrossRef] [PubMed] [Green Version]
  19. Fidler, J.; Zdunek-Zastocka, E.; Prabucka, B.; Bielawski, W. Abscisic acid content and the expression of genes related to its metabolism during maturation of triticale grains of cultivars differing in pre-harvest sprouting susceptibility. J. Plant Physiol. 2016, 207, 1–9. [Google Scholar] [CrossRef]
  20. Kushiro, T.; Okamoto, M.; Nakabayashi, K.; Yamagishi, K.; Kitamura, S.; Asami, T.; Hirai, N.; Koshiba, T.; Kamiya, Y.; Nambara, E. The Arabidopsis cytochrome P450 CYP707A encodes ABA 8′-hydroxylases: Key enzymes in ABA catabolism. Embo J. 2004, 23, 1647–1656. [Google Scholar] [CrossRef] [Green Version]
  21. Finkelstein, R. Abscisic Acid synthesis and response. Arab. Book 2013, 11, e0166. [Google Scholar] [CrossRef] [PubMed] [Green Version]
  22. Ng, L.M.; Melcher, K.; Teh, B.T.; Xu, H.E. Abscisic acid perception and signaling: Structural mechanisms and applications. Acta Pharmacol. Sin. 2014, 35, 567–584. [Google Scholar] [CrossRef] [PubMed] [Green Version]
  23. Su, T.; Yang, M.; Wang, P.; Zhao, Y.; Ma, C. Interplay between the Ubiquitin Proteasome System and Ubiquitin-Mediated Autophagy in Plants. Cells 2020, 9, 2219. [Google Scholar] [CrossRef] [PubMed]
  24. Kumar, M.; Kesawat, M.S.; Ali, A.; Lee, S.C.; Gill, S.S.; Kim, A.H.U. Integration of Abscisic Acid Signaling with Other Signaling Pathways in Plant Stress Responses and Development. Plants 2019, 8, 592. [Google Scholar] [CrossRef] [PubMed] [Green Version]
  25. Yamaguchi, S. Gibberellin metabolism and its regulation. Annu. Rev. Plant Biol. 2008, 59, 225–251. [Google Scholar] [CrossRef]
  26. Binenbaum, J.; Weinstain, R.; Shani, E. Gibberellin Localization and Transport in Plants. Trends Plant Sci. 2018, 23, 410–421. [Google Scholar] [CrossRef] [Green Version]
  27. Hu, J.; Mitchum, M.G.; Barnaby, N.; Ayele, B.T.; Ogawa, M.; Nam, E.; Lai, W.-C.; Hanada, A.; Alonso, J.M.; Ecker, J.R.; et al. Potential Sites of Bioactive Gibberellin Production during Reproductive Growth in Arabidopsis. Plant Cell 2008, 20, 320–336. [Google Scholar] [CrossRef] [Green Version]
  28. Sun, T.-P. Gibberellin metabolism, perception and signaling pathways in Arabidopsis. Arab. Book 2008, 6, e0103. [Google Scholar] [CrossRef]
  29. Nadeau, C.D.; Ozga, J.A.; Kurepin, L.V.; Jin, A.; Pharis, R.P.; Reinecke, D.M. Tissue-specific regulation of gibberellin biosynthesis in developing pea seeds. Plant Physiol. 2011, 156, 897–912. [Google Scholar] [CrossRef] [Green Version]
  30. Ueguchi-Tanaka, M.; Ashikari, M.; Nakajima, M.; Itoh, H.; Katoh, E.; Kobayashi, M.; Chow, T.Y.; Hsing, Y.I.; Kitano, H.; Yamaguchi, I.; et al. Gibberellin Insensitive DWARF1 encodes a soluble receptor for gibberellin. Nature 2005, 437, 693–698. [Google Scholar] [CrossRef]
  31. Griffiths, J.; Murase, K.; Rieu, I.; Zentella, R.; Zhang, Z.-L.; Powers, S.J.; Gong, F.; Phillips, A.L.; Hedden, P.; Sun, T.-p.; et al. Genetic Characterization and Functional Analysis of the GID1 Gibberellin Receptors in Arabidopsis. Plant Cell 2006, 18, 3399–3414. [Google Scholar] [CrossRef] [PubMed] [Green Version]
  32. Sun, T.P. The molecular mechanism and evolution of the GA-GID1-DELLA signaling module in plants. Curr. Biol. 2011, 21, R338–R345. [Google Scholar] [CrossRef] [PubMed] [Green Version]
  33. Murase, K.; Hirano, Y.; Sun, T.P.; Hakoshima, T. Gibberellin-induced DELLA recognition by the gibberellin receptor GID1. Nature 2008, 456, 459–463. [Google Scholar] [CrossRef] [PubMed]
  34. McGinnis, K.M.; Thomas, S.G.; Soule, J.D.; Strader, L.C.; Zale, J.M.; Sun, T.P.; Steber, C.M. The Arabidopsis SLEEPY1 gene encodes a putative F-box subunit of an SCF E3 ubiquitin ligase. Plant Cell 2003, 15, 1120–1130. [Google Scholar] [CrossRef] [PubMed] [Green Version]
  35. Sasaki, A.; Itoh, H.; Gomi, K.; Ueguchi-Tanaka, M.; Ishiyama, K.; Kobayashi, M.; Jeong, D.H.; An, G.; Kitano, H.; Ashikari, M.; et al. Accumulation of phosphorylated repressor for gibberellin signaling in an F-box mutant. Science 2003, 299, 1896–1898. [Google Scholar] [CrossRef] [Green Version]
  36. Mayer, U.; Ruiz, R.A.T.; Berleth, T.; Miséra, S.; Jürgens, G. Mutations affecting body organization in the Arabidopsis embryo. Nature 1991, 353, 402–407. [Google Scholar] [CrossRef]
  37. Cheng, Y.; Dai, X.; Zhao, Y. Auxin synthesized by the YUCCA flavin monooxygenases is essential for embryogenesis and leaf formation in Arabidopsis. Plant Cell 2007, 19, 2430–2439. [Google Scholar] [CrossRef] [Green Version]
  38. Luerssen, H.; Kirik, V.; Herrmann, P.; Miséra, S. FUSCA3 encodes a protein with a conserved VP1/AB13-like B3 domain which is of functional importance for the regulation of seed maturation in Arabidopsis thaliana. Plant J. 1998, 15, 755–764. [Google Scholar] [CrossRef]
  39. Stone, S.L.; Kwong, L.W.; Yee, K.M.; Pelletier, J.; Lepiniec, L.; Fischer, R.L.; Goldberg, R.B.; Harada, J.J. Leafy Cotyledon2 encodes a B3 domain transcription factor that induces embryo development. Proc. Natl. Acad. Sci. USA 2001, 98, 11806–11811. [Google Scholar] [CrossRef] [Green Version]
  40. Lee, H.; Fischer, R.L.; Goldberg, R.B.; Harada, J.J. Arabidopsis LEAFY COTYLEDON1 represents a functionally specialized subunit of the CCAAT binding transcription factor. Proc. Natl. Acad. Sci. USA 2003, 100, 2152–2156. [Google Scholar] [CrossRef] [Green Version]
  41. Braybrook, S.A.; Harada, J.J. LECs go crazy in embryo development. Trends Plant Sci. 2008, 13, 624–630. [Google Scholar] [CrossRef] [PubMed]
  42. Swain, S.M.; Reid, J.B.; Kamiya, Y. Gibberellins are required for embryo growth and seed development in pea. Plant J. 1997, 12, 1329–1338. [Google Scholar] [CrossRef]
  43. Groot, S.P.C.; Bruinsma, J.; Karssen, C.M. The role of endogenous gibberellin in seed and fruit development of tomato: Studies with a gibberellin-deficient mutant. Physiol. Plant. 1987, 71, 184–190. [Google Scholar] [CrossRef]
  44. Singh, D.P.; Filardo, F.F.; Storey, R.; Jermakow, A.M.; Yamaguchi, S.; Swain, S.M. Overexpression of a gibberellin inactivation gene alters seed development, KNOX gene expression, and plant development in Arabidopsis. Physiol. Plant 2010, 138, 74–90. [Google Scholar] [CrossRef]
  45. Singh, D.P.; Jermakow, A.M.; Swain, S.M. Gibberellins are required for seed development and pollen tube growth in Arabidopsis. Plant Cell 2002, 14, 3133–3147. [Google Scholar] [CrossRef] [Green Version]
  46. Chen, S.; Wang, X.; Zhang, L.; Lin, S.; Liu, D.; Wang, Q.; Cai, S.; El-Tanbouly, R.; Gan, L.; Wu, H.; et al. Identification and characterization of tomato gibberellin 2-oxidases (GA2oxs) and effects of fruit-specific SlGA2ox1 overexpression on fruit and seed growth and development. Hortic. Res. 2016, 3, 16059. [Google Scholar] [CrossRef] [Green Version]
  47. Friml, J.; Vieten, A.; Sauer, M.; Weijers, D.; Schwarz, H.; Hamann, T.; Offringa, R.; Jürgens, G. Efflux-dependent auxin gradients establish the apical–basal axis of Arabidopsis. Nature 2003, 426, 147–153. [Google Scholar] [CrossRef]
  48. Liu, Y.; Li, X.; Zhao, J.; Tang, X.; Tian, S.; Chen, J.; Shi, C.; Wang, W.; Zhang, L.; Feng, X. Direct evidence that suspensor cells have embryogenic potential that is suppressed by the embryo proper during normal embryogenesis. Proc. Natl. Acad. Sci. USA 2015, 112, 12432–12437. [Google Scholar] [CrossRef] [Green Version]
  49. Robert, H.S.; Park, C.; Gutièrrez, C.L.; Wójcikowska, B.; Pěnčík, A.; Novák, O.; Chen, J.; Grunewald, W.; Dresselhaus, T.; Friml, J. Maternal auxin supply contributes to early embryo patterning in Arabidopsis. Nat. Plants 2018, 4, 548–553. [Google Scholar] [CrossRef]
  50. Kawashima, T.; Goldberg, R.B. The suspensor: Not just suspending the embryo. Trends Plant Sci. 2010, 15, 23–30. [Google Scholar] [CrossRef]
  51. Yeung, E.C.; Meinke, D.W. Embryogenesis in angiosperms: Development of the suspensor. Plant Cell 1993, 5, 1371. [Google Scholar] [CrossRef] [PubMed] [Green Version]
  52. Zhao, P.; Zhou, X.-M.; Zhang, L.-Y.; Wang, W.; Ma, L.-G.; Yang, L.-B.; Peng, X.-B.; Bozhkov, P.V.; Sun, M.-X. A bipartite molecular module controls cell death activation in the basal cell lineage of plant embryos. PLoS Biol. 2013, 11, e1001655. [Google Scholar] [CrossRef] [PubMed] [Green Version]
  53. Shi, C.; Luo, P.; Du, Y.-T.; Chen, H.; Huang, X.; Cheng, T.-H.; Luo, A.; Li, H.-J.; Yang, W.-C.; Zhao, P.; et al. Maternal control of suspensor programmed cell death via gibberellin signaling. Nat. Commun. 2019, 10, 3484. [Google Scholar] [CrossRef] [PubMed] [Green Version]
  54. Frey, A.; Godin, B.; Bonnet, M.; Sotta, B.; Marion-Poll, A. Maternal synthesis of abscisic acid controls seed development and yield in Nicotiana plumbaginifolia. Planta 2004, 218, 958–964. [Google Scholar] [CrossRef] [PubMed]
  55. Raz, V.; Bergervoet, J.H.; Koornneef, M. Sequential steps for developmental arrest in Arabidopsis seeds. Development 2001, 128, 243–252. [Google Scholar] [CrossRef] [PubMed]
  56. Giraudat, J.; Hauge, B.M.; Valon, C.; Smalle, J.; Parcy, F.; Goodman, H.M. Isolation of the Arabidopsis ABI3 gene by positional cloning. Plant Cell 1992, 4, 1251–1261. [Google Scholar] [CrossRef] [PubMed]
  57. Lotan, T.; Ohto, M.; Yee, K.M.; West, M.A.; Lo, R.; Kwong, R.W.; Yamagishi, K.; Fischer, R.L.; Goldberg, R.B.; Harada, J.J. Arabidopsis Leafy Cotyledon1 is sufficient to induce embryo development in vegetative cells. Cell 1998, 93, 1195–1205. [Google Scholar] [CrossRef] [Green Version]
  58. Kwong, R.W.; Bui, A.Q.; Lee, H.; Kwong, L.W.; Fischer, R.L.; Goldberg, R.B.; Harada, J.J. Leafy Cotyledon1-Like defines a class of regulators essential for embryo development. Plant Cell 2003, 15, 5–18. [Google Scholar] [CrossRef] [Green Version]
  59. Gutierrez, L.; Van Wuytswinkel, O.; Castelain, M.; Bellini, C. Combined networks regulating seed maturation. Trends Plant Sci. 2007, 12, 294–300. [Google Scholar] [CrossRef]
  60. Holdsworth, M.J.; Bentsink, L.; Soppe, W.J.J. Molecular networks regulating Arabidopsis seed maturation, after-ripening, dormancy and germination. New Phytol. 2008, 179, 33–54. [Google Scholar] [CrossRef] [Green Version]
  61. Jia, H.; Suzuki, M.; McCarty, D.R. Regulation of the seed to seedling developmental phase transition by the LAFL and VAL transcription factor networks. Wiley Interdiscip. Rev. Dev. Biol. 2014, 3, 135–145. [Google Scholar] [CrossRef] [PubMed]
  62. Braybrook, S.A.; Stone, S.L.; Park, S.; Bui, A.Q.; Le, B.H.; Fischer, R.L.; Goldberg, R.B.; Harada, J.J. Genes directly regulated by Leafy Cotyledon2 provide insight into the control of embryo maturation and somatic embryogenesis. Proc. Natl. Acad. Sci. USA 2006, 103, 3468–3473. [Google Scholar] [CrossRef] [PubMed] [Green Version]
  63. Kroj, T.; Savino, G.; Valon, C.; Giraudat, J.; Parcy, F. Regulation of storage protein gene expression in Arabidopsis. Development 2003, 130, 6065–6073. [Google Scholar] [CrossRef] [PubMed] [Green Version]
  64. Mönke, G.; Altschmied, L.; Tewes, A.; Reidt, W.; Mock, H.P.; Bäumlein, H.; Conrad, U. Seed-specific transcription factors ABI3 and FUS3: Molecular interaction with DNA. Planta 2004, 219, 158–166. [Google Scholar] [CrossRef]
  65. Reidt, W.; Wohlfarth, T.; Ellerström, M.; Czihal, A.; Tewes, A.; Ezcurra, I.; Rask, L.; Bäumlein, H. Gene regulation during late embryogenesis: The RY motif of maturation-specific gene promoters is a direct target of the FUS3 gene product. Plant J. 2000, 21, 401–408. [Google Scholar] [CrossRef]
  66. Suzuki, M.; Kao, C.Y.; McCarty, D.R. The conserved B3 domain of VIVIPAROUS1 has a cooperative DNA binding activity. Plant Cell 1997, 9, 799–807. [Google Scholar] [CrossRef] [Green Version]
  67. Miller, M. Interactions of CCAAT/enhancer-binding protein β with transcriptional coregulators. Postepy. Biochem. 2016, 62, 343–348. [Google Scholar] [CrossRef]
  68. Parcy, F.; Valon, C.; Kohara, A.; Miséra, S.; Giraudat, J. The ABSCISIC ACID-INSENSITIVE3, FUSCA3, and LEAFY COTYLEDON1 loci act in concert to control multiple aspects of Arabidopsis seed development. Plant Cell 1997, 9, 1265–1277. [Google Scholar]
  69. To, A.; Valon, C.; Savino, G.; Guilleminot, J.; Devic, M.; Giraudat, J.; Parcy, F. A network of local and redundant gene regulation governs Arabidopsis seed maturation. Plant Cell 2006, 18, 1642–1651. [Google Scholar] [CrossRef] [Green Version]
  70. Jo, L.; Pelletier, J.M.; Harada, J.J. Central role of the LEAFY COTYLEDON1 transcription factor in seed development. J. Integr. Plant Biol. 2019, 61, 564–580. [Google Scholar] [CrossRef] [Green Version]
  71. Stone, S.L.; Braybrook, S.A.; Paula, S.L.; Kwong, L.W.; Meuser, J.; Pelletier, J.; Hsieh, T.-F.; Fischer, R.L.; Goldberg, R.B.; Harada, J.J. Arabidopsis LEAFY COTYLEDON2 induces maturation traits and auxin activity: Implications for somatic embryogenesis. Proc. Natl. Acad. Sci. USA 2008, 105, 3151–3156. [Google Scholar] [CrossRef] [PubMed] [Green Version]
  72. Kagaya, Y.; Okuda, R.; Ban, A.; Toyoshima, R.; Tsutsumida, K.; Usui, H.; Yamamoto, A.; Hattori, T. Indirect ABA-dependent regulation of seed storage protein genes by FUSCA3 transcription factor in Arabidopsis. Plant Cell Physiol. 2005, 46, 300–311. [Google Scholar] [CrossRef] [PubMed]
  73. Mönke, G.; Seifert, M.; Keilwagen, J.; Mohr, M.; Grosse, I.; Hähnel, U.; Junker, A.; Weisshaar, B.; Conrad, U.; Bäumlein, H.; et al. Toward the identification and regulation of the Arabidopsis thaliana ABI3 regulon. Nucleic Acids Res. 2012, 40, 8240–8254. [Google Scholar] [CrossRef] [PubMed] [Green Version]
  74. Yamamoto, A.; Kagaya, Y.; Usui, H.; Hobo, T.; Takeda, S.; Hattori, T. Diverse roles and mechanisms of gene regulation by the Arabidopsis seed maturation master regulator FUS3 revealed by microarray analysis. Plant Cell Physiol. 2010, 51, 2031–2046. [Google Scholar] [CrossRef] [PubMed] [Green Version]
  75. Junker, A.; Mönke, G.; Rutten, T.; Keilwagen, J.; Seifert, M.; Thi, T.M.; Renou, J.P.; Balzergue, S.; Viehöver, P.; Hähnel, U.; et al. Elongation-related functions of LEAFY COTYLEDON1 during the development of Arabidopsis thaliana. Plant J. 2012, 71, 427–442. [Google Scholar] [CrossRef] [PubMed] [Green Version]
  76. Wang, F.; Perry, S.E. Identification of direct targets of FUSCA3, a key regulator of Arabidopsis seed development. Plant Physiol. 2013, 161, 1251–1264. [Google Scholar] [CrossRef] [PubMed] [Green Version]
  77. Collin, A.; Daszkowska-Golec, A.; Szarejko, I. Updates on the Role of ABSCISIC ACID INSENSITIVE 5 (ABI5) and ABSCISIC ACID-RESPONSIVE ELEMENT BINDING FACTORs (ABFs) in ABA Signaling in Different Developmental Stages in Plants. Cells 2021, 10, 1996. [Google Scholar] [CrossRef]
  78. Nakamura, S.; Lynch, T.J.; Finkelstein, R.R. Physical interactions between ABA response loci of Arabidopsis. Plant J. 2001, 26, 627–635. [Google Scholar] [CrossRef]
  79. Alonso, R.; Oñate-Sánchez, L.; Weltmeier, F.; Ehlert, A.; Diaz, I.; Dietrich, K.; Vicente-Carbajosa, J.; Dröge-Laser, W. A pivotal role of the basic leucine zipper transcription factor bZIP53 in the regulation of Arabidopsis seed maturation gene expression based on heterodimerization and protein complex formation. Plant Cell 2009, 21, 1747–1761. [Google Scholar] [CrossRef] [Green Version]
  80. Curaba, J.; Moritz, T.; Blervaque, R.; Parcy, F.O.; Raz, V.; Herzog, M.; Vachon, G. AtGA3ox2, a Key Gene Responsible for Bioactive Gibberellin Biosynthesis, Is Regulated during Embryogenesis by LEAFY COTYLEDON2 and FUSCA3 in Arabidopsis. Plant Physiol. 2004, 136, 3660–3669. [Google Scholar] [CrossRef] [Green Version]
  81. Jia, H.; McCarty, D.R.; Suzuki, M. Distinct roles of LAFL network genes in promoting the embryonic seedling fate in the absence of VAL repression. Plant Physiol. 2013, 163, 1293–1305. [Google Scholar] [CrossRef] [PubMed] [Green Version]
  82. Alonso-Blanco, C.; Bentsink, L.; Hanhart, C.J.; Vries, H.B.-d.; Koornneef, M. Analysis of Natural Allelic Variation at Seed Dormancy Loci of Arabidopsis thaliana. Genetics 2003, 164, 711–729. [Google Scholar] [CrossRef] [PubMed]
  83. Nakashima, K.; Fujita, Y.; Kanamori, N.; Katagiri, T.; Umezawa, T.; Kidokoro, S.; Maruyama, K.; Yoshida, T.; Ishiyama, K.; Kobayashi, M.; et al. Three Arabidopsis SnRK2 protein kinases, SRK2D/SnRK2.2, SRK2E/SnRK2.6/OST1 and SRK2I/SnRK2.3, involved in ABA signaling are essential for the control of seed development and dormancy. Plant Cell Physiol. 2009, 50, 1345–1363. [Google Scholar] [CrossRef] [PubMed] [Green Version]
  84. Zheng, Z.; Xu, X.; Crosley, R.A.; Greenwalt, S.A.; Sun, Y.; Blakeslee, B.; Wang, L.; Ni, W.; Sopko, M.S.; Yao, C. The protein kinase SnRK2. 6 mediates the regulation of sucrose metabolism and plant growth in Arabidopsis. Plant Physiol. 2010, 153, 99–113. [Google Scholar] [CrossRef] [PubMed] [Green Version]
  85. Zhao, Y.; Zhang, Z.; Gao, J.; Wang, P.; Hu, T.; Wang, Z.; Hou, Y.-J.; Wan, Y.; Liu, W.; Xie, S. Arabidopsis duodecuple mutant of PYL ABA receptors reveals PYL repression of ABA-independent SnRK2 activity. Cell Rep. 2018, 23, 3340–3351.e3345. [Google Scholar] [CrossRef] [PubMed]
  86. Gonzalez-Guzman, M.; Pizzio, G.A.; Antoni, R.; Vera-Sirera, F.; Merilo, E.; Bassel, G.W.; Fernández, M.A.; Holdsworth, M.J.; Perez-Amador, M.A.; Kollist, H.; et al. Arabidopsis PYR/PYL/RCAR receptors play a major role in quantitative regulation of stomatal aperture and transcriptional response to abscisic acid. Plant Cell 2012, 24, 2483–2496. [Google Scholar] [CrossRef] [PubMed] [Green Version]
  87. Huang, H.; Xie, S.; Xiao, Q.; Wei, B.; Zheng, L.; Wang, Y.; Cao, Y.; Zhang, X.; Long, T.; Li, Y.; et al. Sucrose and ABA regulate starch biosynthesis in maize through a novel transcription factor, ZmEREB156. Sci. Rep. 2016, 6, 27590. [Google Scholar] [CrossRef] [PubMed]
  88. Hu, Y.-F.; Li, Y.-P.; Zhang, J.; Liu, H.; Tian, M.; Huang, Y. Binding of ABI4 to a CACCG motif mediates the ABA-induced expression of the ZmSSI gene in maize (Zea mays L.) endosperm. J. Exp. Bot. 2012, 63, 5979–5989. [Google Scholar] [CrossRef] [Green Version]
  89. Chen, T.; Li, G.; Islam, M.R.; Fu, W.; Feng, B.; Tao, L.; Fu, G. Abscisic acid synergizes with sucrose to enhance grain yield and quality of rice by improving the source-sink relationship. BMC Plant Biol. 2019, 19, 525. [Google Scholar] [CrossRef]
  90. Finkelstein, R.R.; Gampala, S.S.; Rock, C.D. Abscisic acid signaling in seeds and seedlings. Plant Cell 2002, 14, S15–S45. [Google Scholar] [CrossRef] [Green Version]
  91. Zhang, Y.-Q.; Lu, X.; Zhao, F.-Y.; Li, Q.-T.; Niu, S.-L.; Wei, W.; Zhang, W.-K.; Ma, B.; Chen, S.-Y.; Zhang, J.-S. Soybean GmDREBL increases lipid content in seeds of transgenic Arabidopsis. Sci. Rep. 2016, 6, 1–13. [Google Scholar] [CrossRef] [PubMed] [Green Version]
  92. Kagaya, Y.; Toyoshima, R.; Okuda, R.; Usui, H.; Yamamoto, A.; Hattori, T. LEAFY COTYLEDON1 controls seed storage protein genes through its regulation of FUSCA3 and ABSCISIC ACID INSENSITIVE3. Plant Cell Physiol. 2005, 46, 399–406. [Google Scholar] [CrossRef] [PubMed] [Green Version]
  93. Mu, J.; Tan, H.; Zheng, Q.; Fu, F.; Liang, Y.; Zhang, J.; Yang, X.; Wang, T.; Chong, K.; Wang, X.-J. LEAFY COTYLEDON1 is a key regulator of fatty acid biosynthesis in Arabidopsis. Plant Physiol. 2008, 148, 1042–1054. [Google Scholar] [CrossRef] [PubMed] [Green Version]
  94. Chen, M.; Zhang, B.; Li, C.; Kulaveerasingam, H.; Chew, F.T.; Yu, H. TRANSPARENT TESTA GLABRA1 regulates the accumulation of seed storage reserves in Arabidopsis. Plant Physiol. 2015, 169, 391–402. [Google Scholar] [CrossRef] [PubMed] [Green Version]
  95. Baud, S.; Dubreucq, B.; Miquel, M.; Rochat, C.; Lepiniec, L. Storage reserve accumulation in Arabidopsis: Metabolic and developmental control of seed filling. Arab. Book Am. Soc. Plant Biol. 2008, 6, e0113. [Google Scholar] [CrossRef] [Green Version]
  96. To, A.; Joubès, J.; Barthole, G.; Lécureuil, A.; Scagnelli, A.; Jasinski, S.; Lepiniec, L.; Baud, S. WRINKLED transcription factors orchestrate tissue-specific regulation of fatty acid biosynthesis in Arabidopsis. Plant Cell 2012, 24, 5007–5023. [Google Scholar] [CrossRef] [PubMed] [Green Version]
  97. Meinke, D.W.; Franzmann, L.H.; Nickle, T.C.; Yeung, E.C. Leafy Cotyledon Mutants of Arabidopsis. Plant Cell 1994, 6, 1049–1064. [Google Scholar] [CrossRef]
  98. Gubler, F.; Millar, A.A.; Jacobsen, J.V. Dormancy release, ABA and pre-harvest sprouting. Curr. Opin. Plant Biol. 2005, 8, 183–187. [Google Scholar] [CrossRef]
  99. Mendes, A.; Kelly, A.A.; van Erp, H.; Shaw, E.; Powers, S.J.; Kurup, S.; Eastmond, P.J. bZIP67 regulates the omega-3 fatty acid content of Arabidopsis seed oil by activating fatty acid desaturase3. Plant Cell 2013, 25, 3104–3116. [Google Scholar] [CrossRef] [Green Version]
  100. Sall, K.; Dekkers, B.J.; Nonogaki, M.; Katsuragawa, Y.; Koyari, R.; Hendrix, D.; Willems, L.A.; Bentsink, L.; Nonogaki, H. DELAY OF GERMINATION 1-LIKE 4 acts as an inducer of seed reserve accumulation. Plant J. 2019, 100, 7–19. [Google Scholar] [CrossRef] [Green Version]
  101. Armstead, I.; Donnison, I.; Aubry, S.; Harper, J.; Hörtensteiner, S.; James, C.; Mani, J.; Moffet, M.; Ougham, H.; Roberts, L.; et al. Cross-species identification of Mendel’s I locus. Science 2007, 315, 73. [Google Scholar] [CrossRef] [PubMed] [Green Version]
  102. Sato, Y.; Morita, R.; Nishimura, M.; Yamaguchi, H.; Kusaba, M. Mendel’s green cotyledon gene encodes a positive regulator of the chlorophyll-degrading pathway. Proc. Natl. Acad. Sci. USA 2007, 104, 14169. [Google Scholar] [CrossRef] [PubMed] [Green Version]
  103. Delmas, F.; Sankaranarayanan, S.; Deb, S.; Widdup, E.; Bournonville, C.; Bollier, N.; Northey, J.G.; McCourt, P.; Samuel, M.A. ABI3 controls embryo degreening through Mendel’s I locus. Proc. Natl. Acad. Sci. USA 2013, 110, E3888–E3894. [Google Scholar] [CrossRef] [PubMed] [Green Version]
  104. Roscoe, T.T.; Guilleminot, J.; Bessoule, J.-J.; Berger, F.; Devic, M. Complementation of seed maturation phenotypes by ectopic expression of ABSCISIC ACID INSENSITIVE3, FUSCA3 and LEAFY COTYLEDON2 in Arabidopsis. Plant Cell Physiol. 2015, 56, 1215–1228. [Google Scholar] [CrossRef] [PubMed] [Green Version]
  105. Manfre, A.J.; LaHatte, G.A.; Climer, C.R.; Marcotte Jr, W.R. Seed dehydration and the establishment of desiccation tolerance during seed maturation is altered in the Arabidopsis thaliana mutant atem6-1. Plant Cell Physiol. 2009, 50, 243–253. [Google Scholar] [CrossRef] [PubMed] [Green Version]
  106. Delahaie, J.; Hundertmark, M.; Bove, J.; Leprince, O.; Rogniaux, H.; Buitink, J. LEA polypeptide profiling of recalcitrant and orthodox legume seeds reveals ABI3-regulated LEA protein abundance linked to desiccation tolerance. J. Exp. Bot. 2013, 64, 4559–4573. [Google Scholar] [CrossRef]
  107. Wehmeyer, N.; Vierling, E. The expression of small heat shock proteins in seeds responds to discrete developmental signals and suggests a general protective role in desiccation tolerance. Plant Physiol. 2000, 122, 1099–1108. [Google Scholar] [CrossRef] [Green Version]
  108. Bailly, C. Active oxygen species and antioxidants in seed biology. Seed Sci. Res. 2004, 14, 93–107. [Google Scholar] [CrossRef]
  109. Verdier, J.; Lalanne, D.; Pelletier, S.; Torres-Jerez, I.; Righetti, K.; Bandyopadhyay, K.; Leprince, O.; Chatelain, E.; Vu, B.L.; Gouzy, J.; et al. A Regulatory Network-Based Approach Dissects Late Maturation Processes Related to the Acquisition of Desiccation Tolerance and Longevity of Medicago truncatula Seeds. Plant Physiol. 2013, 163, 757–774. [Google Scholar] [CrossRef]
  110. Mène-Saffrané, L.; Jones, A.D.; DellaPenna, D. Plastochromanol-8 and tocopherols are essential lipid-soluble antioxidants during seed desiccation and quiescence in Arabidopsis. Proc. Natl. Acad. Sci. USA 2010, 107, 17815–17820. [Google Scholar] [CrossRef] [Green Version]
  111. Koornneef, M.; Bentsink, L.; Hilhorst, H. Seed dormancy and germination. Curr. Opin. Plant Biol. 2002, 5, 33–36. [Google Scholar] [CrossRef] [Green Version]
  112. Battaglia, M.; Olvera-Carrillo, Y.; Garciarrubio, A.; Campos, F.; Covarrubias, A.A. The enigmatic LEA proteins and other hydrophilins. Plant Physiol. 2008, 148, 6–24. [Google Scholar] [CrossRef] [PubMed] [Green Version]
  113. Hong-Bo, S.; Zong-Suo, L.; Ming-An, S. LEA proteins in higher plants: Structure, function, gene expression and regulation. Colloids Surf. B Biointerfaces 2005, 45, 131–135. [Google Scholar] [CrossRef] [PubMed]
  114. Olvera-Carrillo, Y.; Campos, F.; Reyes, J.L.; Garciarrubio, A.; Covarrubias, A.A. Functional analysis of the group 4 late embryogenesis abundant proteins reveals their relevance in the adaptive response during water deficit in Arabidopsis. Plant Physiol. 2010, 154, 373–390. [Google Scholar] [CrossRef] [PubMed] [Green Version]
  115. Kijak, H.; Ratajczak, E. What Do We Know About the Genetic Basis of Seed Desiccation Tolerance and Longevity? Int. J. Mol. Sci. 2020, 21, 3612. [Google Scholar] [CrossRef] [PubMed]
  116. Bies-Ethève, N.; Gaubier-Comella, P.; Debures, A.; Lasserre, E.; Jobet, E.; Raynal, M.; Cooke, R.; Delseny, M. Inventory, evolution and expression profiling diversity of the LEA (late embryogenesis abundant) protein gene family in Arabidopsis thaliana. Plant Mol. Biol. 2008, 67, 107–124. [Google Scholar] [CrossRef]
  117. Finkelstein, R.R.; Lynch, T.J. The Arabidopsis abscisic acid response gene ABI5 encodes a basic leucine zipper transcription factor. Plant Cell 2000, 12, 599–609. [Google Scholar] [CrossRef] [Green Version]
  118. Bensmihen, S.; Rippa, S.; Lambert, G.; Jublot, D.; Pautot, V.; Granier, F.; Giraudat, J.; Parcy, F. The homologous ABI5 and EEL transcription factors function antagonistically to fine-tune gene expression during late embryogenesis. Plant Cell 2002, 14, 1391–1403. [Google Scholar] [CrossRef] [Green Version]
  119. Carles, C.; Bies-Etheve, N.; Aspart, L.; Léon-Kloosterziel, K.M.; Koornneef, M.; Echeverria, M.; Delseny, M. Regulation of Arabidopsis thaliana Em genes: Role of ABI5. Plant J. 2002, 30, 373–383. [Google Scholar] [CrossRef] [Green Version]
  120. Kotak, S.; Vierling, E.; Baumlein, H.; von Koskull-Doring, P. A novel transcriptional cascade regulating expression of heat stress proteins during seed development of Arabidopsis. Plant Cell 2007, 19, 182–195. [Google Scholar] [CrossRef] [Green Version]
  121. Dekkers, B.J.; He, H.; Hanson, J.; Willems, L.A.; Jamar, D.C.; Cueff, G.; Rajjou, L.; Hilhorst, H.W.; Bentsink, L. The Arabidopsis DELAY OF GERMINATION 1 gene affects ABSCISIC ACID INSENSITIVE 5 (ABI 5) expression and genetically interacts with ABI 3 during Arabidopsis seed development. Plant J. 2016, 85, 451–465. [Google Scholar] [CrossRef] [PubMed]
  122. Bentsink, L.; Jowett, J.; Hanhart, C.J.; Koornneef, M. Cloning of DOG1, a quantitative trait locus controlling seed dormancy in Arabidopsis. Proc. Natl. Acad. Sci. USA 2006, 103, 17042–17047. [Google Scholar] [CrossRef] [PubMed] [Green Version]
  123. Zinsmeister, J.; Lalanne, D.; Terrasson, E.; Chatelain, E.; Vandecasteele, C.; Vu, B.L.; Dubois-Laurent, C.; Geoffriau, E.; Signor, C.L.; Dalmais, M.; et al. ABI5 Is a Regulator of Seed Maturation and Longevity in Legumes. Plant Cell 2016, 28, 2735–2754. [Google Scholar] [CrossRef] [PubMed] [Green Version]
  124. Finkelstein, R.; Reeves, W.; Ariizumi, T.; Steber, C. Molecular aspects of seed dormancy. Annu. Rev. Plant Biol. 2008, 59, 387–415. [Google Scholar] [CrossRef] [PubMed] [Green Version]
  125. Koornneef, M.; Jorna, M.L.; Brinkhorst-van der Swan, D.L.C.; Karssen, C.M. The isolation of abscisic acid (ABA) deficient mutants by selection of induced revertants in non-germinating gibberellin sensitive lines of Arabidopsis thaliana (L.) heynh. Theor. Appl. Genet. 1982, 61, 385–393. [Google Scholar] [CrossRef] [PubMed]
  126. Léon-Kloosterziel, K.M.; Gil, M.A.; Ruijs, G.J.; Jacobsen, S.E.; Olszewski, N.E.; Schwartz, S.H.; Zeevaart, J.A.D.; Koornneef, M. Isolation and characterization of abscisic acid-deficient Arabidopsis mutants at two new loci. Plant J. 1996, 10, 655–661. [Google Scholar] [CrossRef] [PubMed]
  127. Chono, M.; Matsunaka, H.; Seki, M.; Fujita, M.; Kiribuchi-Otobe, C.; Oda, S.; Kojima, H.; Kobayashi, D.; Kawakami, N. Isolation of a wheat (Triticum aestivum L.) mutant in ABA 8′-hydroxylase gene: Effect of reduced ABA catabolism on germination inhibition under field condition. Breed. Sci. 2013, 63, 104–115. [Google Scholar] [CrossRef] [Green Version]
  128. Lee, H.G.; Lee, K.; Seo, P.J. The Arabidopsis MYB96 transcription factor plays a role in seed dormancy. Plant Mol. Biol. 2015, 87, 371–381. [Google Scholar] [CrossRef]
  129. Shu, K.; Chen, Q.; Wu, Y.; Liu, R.; Zhang, H.; Wang, P.; Li, Y.; Wang, S.; Tang, S.; Liu, C. ABI 4 mediates antagonistic effects of abscisic acid and gibberellins at transcript and protein levels. Plant J. 2016, 85, 348–361. [Google Scholar] [CrossRef] [Green Version]
  130. Shu, K.; Zhang, H.; Wang, S.; Chen, M.; Wu, Y.; Tang, S.; Liu, C.; Feng, Y.; Cao, X.; Xie, Q. ABI4 regulates primary seed dormancy by regulating the biogenesis of abscisic acid and gibberellins in Arabidopsis. PLoS Genet. 2013, 9, e1003577. [Google Scholar] [CrossRef] [Green Version]
  131. Miao, C.; Xiao, L.; Hua, K.; Zou, C.; Zhao, Y.; Bressan, R.A.; Zhu, J.-K. Mutations in a subfamily of abscisic acid receptor genes promote rice growth and productivity. Proc. Natl. Acad. Sci. USA 2018, 115, 6058–6063. [Google Scholar] [CrossRef] [PubMed] [Green Version]
  132. West, M.A.; Yee, K.M.; Danao, J.; Zimmerman, J.L.; Fischer, R.L.; Goldberg, R.B.; Harada, J.J. LEAFY COTYLEDON1 is an essential regulator of late embryogenesis and cotyledon identity in Arabidopsis. Plant Cell 1994, 6, 1731–1745. [Google Scholar] [CrossRef] [PubMed] [Green Version]
  133. McCarty, D.R.; Hattori, T.; Carson, C.B.; Vasil, V.; Lazar, M.; Vasil, I.K. The Viviparous-1 developmental gene of maize encodes a novel transcriptional activator. Cell 1991, 66, 895–905. [Google Scholar] [CrossRef]
  134. Hoecker, U.; Vasil, I.K.; McCarty, D.R. Integrated control of seed maturation and germination programs by activator and repressor functions of Viviparous-1 of maize. Genes Dev. 1995, 9, 2459–2469. [Google Scholar] [CrossRef] [PubMed] [Green Version]
  135. McKibbin, R.S.; Wilkinson, M.D.; Bailey, P.C.; Flintham, J.E.; Andrew, L.M.; Lazzeri, P.A.; Gale, M.D.; Lenton, J.R.; Holdsworth, M.J. Transcripts of Vp-1 homeologues are misspliced in modern wheat and ancestral species. Proc. Natl. Acad. Sci. USA 2002, 99, 10203–10208. [Google Scholar] [CrossRef] [PubMed] [Green Version]
  136. Fan, J.; Niu, X.; Wang, Y.; Ren, G.; Zhuo, T.; Yang, Y.; Lu, B.-R.; Liu, Y. Short, direct repeats (SDRs)-mediated post-transcriptional processing of a transcription factor gene OsVP1 in rice (Oryza sativa). J. Exp. Bot. 2007, 58, 3811–3817. [Google Scholar] [CrossRef] [PubMed]
  137. Carrari, F.; Perez-Flores, L.; Lijavetzky, D.; Enciso, S.; Sanchez, R.; Benech-Arnold, R.; Iusem, N. Cloning and expression of a sorghum gene with homology to maize vp1. Its potential involvement in pre-harvest sprouting resistance. Plant Mol. Biol. 2001, 45, 631–640. [Google Scholar] [CrossRef]
  138. Suzuki, M.; Latshaw, S.; Sato, Y.; Settles, A.M.; Koch, K.E.; Hannah, L.C.; Kojima, M.; Sakakibara, H.; McCarty, D.R. The maize Viviparous8 locus, encoding a putative ALTERED MERISTEM PROGRAM1-like peptidase, regulates abscisic acid accumulation and coordinates embryo and endosperm development. Plant Physiol. 2008, 146, 1193–1206. [Google Scholar] [CrossRef] [Green Version]
  139. Griffiths, J.; Barrero, J.M.; Taylor, J.; Helliwell, C.A.; Gubler, F. ALTERED MERISTEM PROGRAM 1 is involved in development of seed dormancy in Arabidopsis. PLoS ONE 2011, 6, e20408. [Google Scholar] [CrossRef] [Green Version]
  140. Utsugi, S.; Ashikawa, I.; Nakamura, S.; Shibasaka, M. TaABI5, a wheat homolog of Arabidopsis thaliana ABA insensitive 5, controls seed germination. J. Plant Res. 2020, 133, 245–256. [Google Scholar] [CrossRef]
  141. Yamasaki, Y.; Gao, F.; Jordan, M.C.; Ayele, B.T. Seed maturation associated transcriptional programs and regulatory networks underlying genotypic difference in seed dormancy and size/weight in wheat (Triticum aestivum L.). BMC Plant Biol. 2017, 17, 1–18. [Google Scholar] [CrossRef] [PubMed] [Green Version]
  142. Cantoro, R.; Crocco, C.D.; Benech-Arnold, R.L.; Rodríguez, M.V. In vitro binding of Sorghum bicolor transcription factors ABI4 and ABI5 to a conserved region of a GA 2-OXIDASE promoter: Possible role of this interaction in the expression of seed dormancy. J. Exp. Bot. 2013, 64, 5721–5735. [Google Scholar] [CrossRef] [PubMed] [Green Version]
  143. Xiang, Y.; Nakabayashi, K.; Ding, J.; He, F.; Bentsink, L.; Soppe, W.J.J. REDUCED DORMANCY5 Encodes a Protein Phosphatase 2C That Is Required for Seed Dormancy in Arabidopsis. Plant Cell 2014, 26, 4362–4375. [Google Scholar] [CrossRef] [PubMed] [Green Version]
  144. Nakabayashi, K.; Bartsch, M.; Xiang, Y.; Miatton, E.; Pellengahr, S.; Yano, R.; Seo, M.; Soppe, W.J. The time required for dormancy release in Arabidopsis is determined by DELAY OF GERMINATION1 protein levels in freshly harvested seeds. Plant Cell 2012, 24, 2826–2838. [Google Scholar] [CrossRef] [PubMed] [Green Version]
  145. Née, G.; Kramer, K.; Nakabayashi, K.; Yuan, B.; Xiang, Y.; Miatton, E.; Finkemeier, I.; Soppe, W.J.J. DELAY OF GERMINATION1 requires PP2C phosphatases of the ABA signalling pathway to control seed dormancy. Nat. Commun. 2017, 8, 72. [Google Scholar] [CrossRef] [PubMed]
  146. Antoni, R.; Gonzalez-Guzman, M.; Rodriguez, L.; Rodrigues, A.; Pizzio, G.A.; Rodriguez, P.L. Selective inhibition of clade A phosphatases type 2C by PYR/PYL/RCAR abscisic acid receptors. Plant Physiol. 2012, 158, 970–980. [Google Scholar] [CrossRef] [Green Version]
  147. Sugimoto, K.; Takeuchi, Y.; Ebana, K.; Miyao, A.; Hirochika, H.; Hara, N.; Ishiyama, K.; Kobayashi, M.; Ban, Y.; Hattori, T.; et al. Molecular cloning of Sdr4, a regulator involved in seed dormancy and domestication of rice. Proc. Natl. Acad. Sci. USA 2010, 107, 5792–5797. [Google Scholar] [CrossRef] [PubMed] [Green Version]
  148. Cao, H.; Han, Y.; Li, J.; Ding, M.; Li, Y.; Li, X.; Chen, F.; Soppe, W.J.; Liu, Y. Arabidopsis thaliana SEED DORMANCY 4-LIKE regulates dormancy and germination by mediating the gibberellin pathway. J. Exp. Bot. 2019, 71, 919–933. [Google Scholar] [CrossRef]
  149. Liu, F.; Zhang, H.; Ding, L.; Soppe, W.J.; Xiang, Y. Reversal of rdo5 1, a homolog of rice seed dormancy4, interacts with bhlh57 and controls aba biosynthesis and seed dormancy in Arabidopsis. Plant Cell 2020, 32, 1933–1948. [Google Scholar] [CrossRef] [Green Version]
  150. Lee, S.-J.; Lee, M.H.; Kim, J.-I.; Kim, S.Y. Arabidopsis putative MAP kinase kinase kinases Raf10 and Raf11 are positive regulators of seed dormancy and ABA response. Plant Cell Physiol. 2015, 56, 84–97. [Google Scholar] [CrossRef]
  151. Nguyen, Q.T.C.; Lee, S.-J.; Choi, S.-W.; Na, Y.-J.; Song, M.-R.; Hoang, Q.T.N.; Sim, S.Y.; Kim, M.-S.; Kim, J.-I.; Soh, M.-S. Arabidopsis raf-like kinase Raf10 is a regulatory component of core ABA signaling. Mol. Cells 2019, 42, 646. [Google Scholar] [PubMed]
  152. Wang, Z.; Cao, H.; Sun, Y.; Li, X.; Chen, F.; Carles, A.; Li, Y.; Ding, M.; Zhang, C.; Deng, X. Arabidopsis paired amphipathic helix proteins SNL1 and SNL2 redundantly regulate primary seed dormancy via abscisic acid–ethylene antagonism mediated by histone deacetylation. Plant Cell 2013, 25, 149–166. [Google Scholar] [CrossRef] [PubMed] [Green Version]
  153. Liu, Y.; Koornneef, M.; Soppe, W.J. The absence of histone H2B monoubiquitination in the Arabidopsis hub1 (rdo4) mutant reveals a role for chromatin remodeling in seed dormancy. Plant Cell 2007, 19, 433–444. [Google Scholar] [CrossRef] [PubMed] [Green Version]
  154. Liu, Y.; Geyer, R.; Van Zanten, M.; Carles, A.; Li, Y.; Hörold, A.; van Nocker, S.; Soppe, W.J. Identification of the Arabidopsis REDUCED DORMANCY 2 gene uncovers a role for the polymerase associated factor 1 complex in seed dormancy. PLoS ONE 2011, 6, e22241. [Google Scholar] [CrossRef] [PubMed] [Green Version]
  155. Sano, N.; Marion-Poll, A. ABA Metabolism and Homeostasis in Seed Dormancy and Germination. Int. J. Mol. Sci. 2021, 22, 5069. [Google Scholar] [CrossRef] [PubMed]
  156. Davière, J.M.; Achard, P. A Pivotal Role of DELLAs in Regulating Multiple Hormone Signals. Mol. Plant 2016, 9, 10–20. [Google Scholar] [CrossRef] [Green Version]
  157. Ito, T.; Okada, K.; Fukazawa, J.; Takahashi, Y. DELLA-dependent and -independent gibberellin signaling. Plant Signal. Behav. 2018, 13, e1445933. [Google Scholar] [CrossRef]
  158. Chen, B.; Fiers, M.; Dekkers, B.J.W.; Maas, L.; van Esse, G.W.; Angenent, G.C.; Zhao, Y.; Boutilier, K. ABA signalling promotes cell totipotency in the shoot apex of germinating embryos. J. Exp. Bot. 2021, 72, 6418–6436. [Google Scholar] [CrossRef]
  159. Liu, X.; Zhang, H.; Zhao, Y.; Feng, Z.; Li, Q.; Yang, H.Q.; Luan, S.; Li, J.; He, Z.H. Auxin controls seed dormancy through stimulation of abscisic acid signaling by inducing ARF-mediated ABI3 activation in Arabidopsis. Proc. Natl. Acad. Sci. USA 2013, 110, 15485–15490. [Google Scholar] [CrossRef] [Green Version]
  160. Emenecker, R.J.; Strader, L.C. Auxin-Abscisic Acid Interactions in Plant Growth and Development. Biomolecules 2020, 10, 281. [Google Scholar] [CrossRef] [Green Version]
Ijms 23 01876 g001 550
Figure 1. The level of GA and ABA during seed development of Arabidopsis. Schematic trend of hormone accumulation during seed development (Based on [7,8,9,10]). DAF: day after flowering.
Figure 1. The level of GA and ABA during seed development of Arabidopsis. Schematic trend of hormone accumulation during seed development (Based on [7,8,9,10]). DAF: day after flowering.
Ijms 23 01876 g001
Ijms 23 01876 g002 550
Figure 2. LAFL network regulates seed development. Arrows and blunted lines indicate activation and repression, respectively. Black line between ABI3 and ABI5 indicate the interaction of these proteins. LEC1, LEC2, and FUS3 (surrounded by the thick black line) are involved in acquisition of DT and all LAFL proteins are involved in the regulation of dormancy. LEC1 is related to GA signaling and ABI3 and ABI5 are related to ABA signaling.
Figure 2. LAFL network regulates seed development. Arrows and blunted lines indicate activation and repression, respectively. Black line between ABI3 and ABI5 indicate the interaction of these proteins. LEC1, LEC2, and FUS3 (surrounded by the thick black line) are involved in acquisition of DT and all LAFL proteins are involved in the regulation of dormancy. LEC1 is related to GA signaling and ABI3 and ABI5 are related to ABA signaling.
Ijms 23 01876 g002
Publisher’s Note: MDPI stays neutral with regard to jurisdictional claims in published maps and institutional affiliations.

Share and Cite

MDPI and ACS Style

Kozaki, A.; Aoyanagi, T. Molecular Aspects of Seed Development Controlled by Gibberellins and Abscisic Acids. Int. J. Mol. Sci. 2022, 23, 1876. https://doi.org/10.3390/ijms23031876

AMA Style

Kozaki A, Aoyanagi T. Molecular Aspects of Seed Development Controlled by Gibberellins and Abscisic Acids. International Journal of Molecular Sciences. 2022; 23(3):1876. https://doi.org/10.3390/ijms23031876

Chicago/Turabian Style

Kozaki, Akiko, and Takuya Aoyanagi. 2022. "Molecular Aspects of Seed Development Controlled by Gibberellins and Abscisic Acids" International Journal of Molecular Sciences 23, no. 3: 1876. https://doi.org/10.3390/ijms23031876

Note that from the first issue of 2016, this journal uses article numbers instead of page numbers. See further details here.

Article Metrics

Back to TopTop