Tracking Infectious Diseases, 2nd Edition

A special issue of Tropical Medicine and Infectious Disease (ISSN 2414-6366). This special issue belongs to the section "Infectious Diseases".

Deadline for manuscript submissions: closed (15 August 2025) | Viewed by 269

Special Issue Editor


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Guest Editor
Department of Pediatrics, Stanford University School of Medicine, Stanford, CA, USA
Interests: infectious disease transmission; mathematical modeling; spatiotemporal disease dynamics; big data; COVID-19; influenza; Dengue; Ebola

Special Issue Information

Dear Colleagues,

Understanding the epidemiology, transmission patterns, and spatio-temporal spread of the emerging and re-emerging infectious diseases such as COVID-19, Ebola, dengue virus, and influenza, etc., is very important to infer the disease containment and mitigation measures. When disease epidemics and pandemics are unprecedented, such as the COVID-19 pandemic in 2020, big data and quantitative methods utilizing advanced computational, mathematical, and statistical modeling approaches are sought after to improve the understanding of the complex disease epidemiology, pandemic progression, and pandemic control measures. With the advancement in technology and surveillance systems in the healthcare industry, technological integration allows for big data technologies to be employed for analyzing and understanding the diseases of rapid dissemination.

This Special Issue on “Tracking Infectious Diseases, 2nd Edition” aims to focus on developing, utilizing, implementing, and comparing quantitative methodologies (e.g., statistical and mathematical modeling, machine learning and deep learning algorithms, geospatial informatics, sentiment analytics, mobility data, etc.) to understand the pathways of disease dissemination, be able to infer the transmission dynamics of infectious diseases in spatial-temporal scales, and forecast diseases to inform disease control strategies and public health responses. Scientists should be able to apply these methods within ethical feasibility to identify the disease risk with the goal of building a scientific understanding of disease spread and control that provides insights for strengthening disease surveillance and diagnostic systems and building early warning systems for emerging and re-emerging infectious diseases, especially in the rapidly changing climatic conditions.

We encourage the submission of original research in the form of innovative, rigorous, and unconventional applications of methodological, technological, administrative, or ethical perspectives on tracking infectious diseases, for example, data analytics in outbreak detection and disease control, developing new algorithms and forecasting methodologies for predicting epidemic progression, artificial intelligence of things (AIoT) in disease surveillance, environmental exposure assessment, the impact of extreme weather events on disease transmission, and best practices in disease tracking.

Dr. Amna Tariq
Guest Editor

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Keywords

  • computational and mathematical modeling
  • statistical technique
  • emerging infectious diseases
  • big data
  • spatiotemporal spread
  • transmission dynamics
  • disease forecasting
  • extreme weather events
  • disease surveillance

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Research

17 pages, 2971 KB  
Article
Web-Based Dashboard for Tracking Cryptococcosis-Related Deaths in Brazil (2000–2022)
by Eric Renato Lima Figueiredo, Lucca Nielsen, João Simão de Melo-Neto, Claudia do Socorro Carvalho Miranda, Nelson Veiga Gonçalves, Rita Catarina Medeiros Sousa and Anderson Raiol Rodrigues
Trop. Med. Infect. Dis. 2025, 10(11), 304; https://doi.org/10.3390/tropicalmed10110304 (registering DOI) - 27 Oct 2025
Abstract
Background: Cryptococcosis, a systemic mycosis, remains a neglected disease in Brazil due to the absence of systematic national surveillance. This study developed an interactive dashboard to analyze cryptococcosis-related deaths (2000–2022) and forecast trends through regional ARIMA modeling. Methodology: The Cross-Industry Standard Process for [...] Read more.
Background: Cryptococcosis, a systemic mycosis, remains a neglected disease in Brazil due to the absence of systematic national surveillance. This study developed an interactive dashboard to analyze cryptococcosis-related deaths (2000–2022) and forecast trends through regional ARIMA modeling. Methodology: The Cross-Industry Standard Process for Data Mining framework was employed to extract mortality data from the Brazilian Mortality Information System, utilizing the microdatasus package in R Studio software, with R version 3.4.0. The records were then filtered using the International Classification of Diseases, Tenth Revision codes (B45 series) to identify primary and associated causes of death. After data extraction, a series of data preprocessing steps was implemented, including deduplication, variable recoding, and the management of missing values. The Shiny framework was employed to construct an interactive dashboard, incorporating Plotly and DT packages, with time-series visualizations, demographic variables, and multilingual support (Portuguese/English). Results: Among 12,308 deaths (2227 primary; 10,081 associated causes), most occurred in males aged 21–60 years. Data completeness was high for age/residence (100%) but lower for education (82%). The dashboard enables dynamic exploration of trends, demographic patterns, and open-data downloads. Regional ARIMA models revealed heterogeneous forecasts, with the Southeast projecting a decline (193 deaths in 2025; 95% CI: 146–240) and the South showing stability (141 deaths; 95% CI: 109–173). Conclusions: This tool bridges a critical gap in cryptococcosis surveillance, enabling dynamic mortality trend analysis, identification of high-risk demographics, and regional forecasting to guide public health resource allocation. While the absence of HIV serostatus data limits etiological analysis, the dashboard’s open-source framework supports adaptation for other neglected diseases. Full article
(This article belongs to the Special Issue Tracking Infectious Diseases, 2nd Edition)
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