Adsorption and Electronic Structure of Imidazole-Based Inhibitors on Fe(100): A Combined DFT and DFTB Study
Abstract
1. Introduction
2. Methods
2.1. DFT Calculations
2.2. DFTB Calculations
2.3. SIESTA Calculations
2.4. Molecular Dynamics Simulations with MACE
3. Results and Discussion
4. Conclusions
Supplementary Materials
Author Contributions
Funding
Data Availability Statement
Acknowledgments
Conflicts of Interest
Abbreviations
| M1 | 4-(1,4,5-triphenylimidazol-2-yl)-aniline |
| M2 | N,N-dimethyl-4-(1,4,5-triphenylimidazol-2-yl)-aniline |
| IM | Imidazole |
| Me-IM | Methyl-imidazole |
| DFT | Density Functional Theory |
| DFTB+ | Density-Functional Tight-Binding |
| MD | Molecular Dynamics |
| HOMO | Highest occupied molecular orbital |
| LUMO | Lowest unoccupied molecular orbital |
| ∆E | HOMO-LUMO energy gap |
| FMO | Frontier molecular orbital |
| MEP | Molecular electrostatic potential |
| IEF-PCM | Integral Equation Formalism Polarized Continuum Model |
| BCC | Body-Centered Cubic |
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| M1 | ||||
| Conformer | Dihedral Definition | Angle Initial (°) | Angle End (°) | Energy (eV) |
| D1 | C3-N2-C4-C13 | −15.63 | 65.40 | −32,788.260 |
| D2 | C11-C12-C2-C1 | 145.30 | 55.56 | −32,788.260 |
| D3 | C9-C10-C1-N1 | −62.57 | 25.27 | −32,788.260 |
| D4 | N1-C3-C5-C7 | −61.15 | −24.82 | −32,788.208 |
| D5 | C14-C6-N3-H2 | −20.91 | −23.77 | −32,788.259 |
| M2 | ||||
| D1 | C3-N2-C4-C13 | −42.29 | 64.74 | −34,925.610 |
| D3 | C9-C10-C1-N1 | −62.62 | 25.15 | −34,925.610 |
| D4 | N1-C3-C5-C7 | −54.32 | −23.90 | −34,925.565 |
| D6 | C11-C12-C2-N2 | 147.03 | −122.18 | −34,925.610 |
| D7 | H1-C16-N3-C15 | 90.82 | 4.59 | −34,925.610 |
| D8 | C14-C6-N3-C16 | 10.39 | 10.43 | −34,925.610 |
| M1 | M2 | |
|---|---|---|
| Parameters | Angles (°) | Angles (°) |
| C6−N3−H1 | 116.07 | - |
| H1−N3−H2 | 112.62 | - |
| C6−N3−C15 | - | 119.80 |
| C15−N3−C16 | - | 119.64 |
| C9−C10−C1−N1 | 25.26 | 25.15 |
| C11−C12−C2−C1 | 55.52 | 54.36 |
| C3−N2−C4−C13 | 65.36 | 64.70 |
| N1−C3−C5−C7 | 28.79 | 27.82 |
| C14−C6−N3−H2 | 23.19 | - |
| C14−C6−N3−C16 | - | 4.57 |
| H1−C16−N3−C15 | - | 10.39 |
| Parameters (eV) | M1 | M2 |
|---|---|---|
| 4.124 | 3.969 | |
| 1.175 | 1.155 | |
| 4.164 | 4.070 | |
| 1.051 | 1.046 |
| M1 | M2 | |||
|---|---|---|---|---|
| Location | Energy | ∆E | Energy | ∆E |
| 0° | −20,296.148 | 1.269 | −20,430.806 | 0.153 |
| 45° | −20,295.811 | 1.605 | −20,430.959 | 0.000 |
| 90° | −20,296.116 | 1.301 | −20,429.789 | 1.170 |
| 135° | −20,295.214 | 2.203 | −20,430.882 | 0.078 |
| 180° | −20,296.456 | 0.961 | −20,430.352 | 0.607 |
| 225° | −20,296.559 | 0.858 | −20,430.746 | 0.213 |
| 270° | −20,292.435 | 4.982 | −20,426.408 | 4.551 |
| 315° | −20,295.433 | 1.984 | −20,429.773 | 1.187 |
| 360° | −20,297.417 | 0.000 | −20,429.477 | 1.482 |
| Method | M1 (eV) | M2 (eV) |
|---|---|---|
| DFTB | −12.673 | −12.912 |
| SIESTA (uncorrected) | −7.371 | −7.533 |
| SIESTA+BSSE | −3.846 | −3.856 |
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Navarrete-Mosquera, A.; Palomares-Báez, J.P.; Soto-Rojo, R.; Delgado-Montiel, T.; Soto-Acosta, S.; Sánchez-Bojorge, N.A.; Glossman-Mitnik, D.; Baldenebro-López, J. Adsorption and Electronic Structure of Imidazole-Based Inhibitors on Fe(100): A Combined DFT and DFTB Study. Organics 2026, 7, 21. https://doi.org/10.3390/org7020021
Navarrete-Mosquera A, Palomares-Báez JP, Soto-Rojo R, Delgado-Montiel T, Soto-Acosta S, Sánchez-Bojorge NA, Glossman-Mitnik D, Baldenebro-López J. Adsorption and Electronic Structure of Imidazole-Based Inhibitors on Fe(100): A Combined DFT and DFTB Study. Organics. 2026; 7(2):21. https://doi.org/10.3390/org7020021
Chicago/Turabian StyleNavarrete-Mosquera, Andrea, Juan Pedro Palomares-Báez, Rody Soto-Rojo, Tomás Delgado-Montiel, Samuel Soto-Acosta, Nora Aydee Sánchez-Bojorge, Daniel Glossman-Mitnik, and Jesús Baldenebro-López. 2026. "Adsorption and Electronic Structure of Imidazole-Based Inhibitors on Fe(100): A Combined DFT and DFTB Study" Organics 7, no. 2: 21. https://doi.org/10.3390/org7020021
APA StyleNavarrete-Mosquera, A., Palomares-Báez, J. P., Soto-Rojo, R., Delgado-Montiel, T., Soto-Acosta, S., Sánchez-Bojorge, N. A., Glossman-Mitnik, D., & Baldenebro-López, J. (2026). Adsorption and Electronic Structure of Imidazole-Based Inhibitors on Fe(100): A Combined DFT and DFTB Study. Organics, 7(2), 21. https://doi.org/10.3390/org7020021

