A Comprehensive Review of Scab Disease Detection on Rosaceae Family Fruits via UAV Imagery
Abstract
:1. Introduction
- Evaluating challenges faced in Scab detection based on UAV images.
- Providing extensive analysis of AI techniques and categorizing them into feature extraction, segmentation, and classification groups.
- Exploring UAV imagery approaches.
- Summarizing the strengths and limitations of applied technologies in the reputed articles.
2. State-of-the-Art in the Research Field
3. Scab Disease in Rosaceae Fruits
3.1. Causes of Scab Disease
3.2. Ways of Prevention
3.3. Early Detection Methods
4. Recent Challenges in Scab Detection
4.1. Anomalies of Symptoms and Lab Analysis for Scab Detection
4.2. Capacity Limitations of UAV Components That Restrict Flying
4.3. Effects of Forest Attributes on UAVs and Images
4.4. Limitations of Sensors and Factors Causing Visibility Issues in Images
4.5. Requisite of Segmentation and Classification
4.6. Application Issues of UAVs
5. Recent Methodologies to Overcome Challenges
5.1. Advanced Approaches That Assist in Scab Detection in the Presence of Symptom Anomalies and Laboratory Analysis
5.2. Evolving Techniques That Extend the Capacity of UAV Components and Flight Duration
5.3. Recent Technologies That Handle Effects of Forest Attributes
5.4. Advanced Sensors and Approaches That Reflect Visibility in Images
5.5. Recent Methodologies That Allow Effective Segmentation and Accurate Classification
5.6. Solutions That Address the Application Issues of UAVs
6. Feature Extraction Techniques in Image Analysis of Rosaceae Fruits
7. Segmentation and Classification of Datasets
7.1. Image Segmentation
7.1.1. Thresholding Segmentation
7.1.2. Edge-Based Segmentation
7.1.3. Region-Based Segmentation
7.1.4. Watershed Segmentation
7.1.5. Clustering-Based Segmentation
7.1.6. Neural Networks for Segmentation
7.1.7. Analysis of Various Segmentation Approaches for Scab Detection
7.2. Image Classification
7.2.1. Unsupervised Classification Method:
- K-Means Clustering: K-means clustering is one of the simple and widely applied clustering algorithms for classification [126]. In K-means clustering, a dataset is split into several clusters. Among all the clusters, a minimum of one component must possess the image of the principal space of the diseased component [127]. The major drawback is the users are restricted to defining the number of clusters for image classification of diseased fruits.
- Iterative Self-Organizing Data Analysis Techniques (ISODATA): ISODATA is another category of unsupervised classifiers [128]. Two parameters strongly influence the classification results. These parameters are the distance threshold that is required for cluster union and the typical deviation threshold that is required for cluster deviation. ISODATA allows good classification in Scab detection and visual interpretation of feature differences in images but shows rare missing point errors.
- Hierarchical Clustering: Another simple unsupervised classifier like K-means is hierarchical clustering. The only difference is that the number of clusters is not fixed and changes in all the iterations. This is further categorized into agglomerative clustering and divisive clustering [129]. The prime reasons for using this clustering in disease detection are its easy implementation and no requirement for advanced specification of the number of clusters. However, it experiences slow classification and does not classify well in images having outliers and noise.
7.2.2. Supervised Classification Method
- K-Nearest Neighbor (KNN): The simplest among all supervised classification methods is the k-nearest neighbor rule [132]. It requires selecting k, the number of neighbors essential for classification. The KNN classifier is not commonly used alone because it requires associated visualization; however, it may be applied as a baseline classifier for comparison with other classifiers [133]. The main advantage is it is simple and easily applicable for small datasets and uses less time for training but shows higher computational complexity.
- Support Vector Machine (SVM): SVM selects extreme points for producing a hyperplane [134]. A hyperplane is the best decision boundary that causes n-dimensional space segregation into appropriate classes. Earlier SVM was applicable for binary classification only, but now it is modified to perform multiclass classification [135]. The other key advantages of SVM are that it is robust, provides simple geometric interpretations, and shows low computational cost. Some drawbacks are the need for large support vectors and slow training.
- Logistic Regression: Despite its name, logistic regression is a powerful supervised classifier instead of a regression model [136]. It applied for predictive analysis. It is developed on probability notion and sigmoid function. This classifier is applicable for linear and binary classification [36]. It is a simple, easy-to-realize, and a more efficient classification method for disease detection in plants. Nevertheless, it is restricted to giving only linear solutions and requires the compilation of data assumptions.
- Naïve Bayes: A probabilistic classifier formed on the Bayes theorem is called naïve Bayes [137]. It assumes that all the features being independent have no interactions among them. Being simple in application and fast in computation, it gives better performance for large datasets [138]. Therefore, it can be used for real-time applications also. However, in some cases classification accuracy is reduced due to class conditional independence.
- Random Forest (RF): Another supervised classifier is random forest, which classifies large data accurately [139]. It uses an ensemble apprenticeship approach for training and sums up the prediction results of individual trees. Unlike other decision tree algorithms, RF does not utilize profit knowledge [140]. It acts as a tree predictor and so helps in assorting trees randomly in forests. In image classification of diseased plants, RF handles large databases efficiently and estimates significant variables. However, it results in excessive fitting in some cases due to noise.
- Deep Learning (DL): The subset of machine learning (ML), in which a computer model imitates human biological learning, is called deep learning (DL) [141]. It contains multiple processing layers such as ANNs rather than classical neural networks. It includes all the steps, data acquisition, classification, and results evaluation. The most applied neural network (NN) is an artificial neural network (ANN) [142]. It is an image-learning and classification tool. NN models perform activities identical to human brains. While knowing previous data, these models are trained to work on related data. Convolutional neural networks (CNNs), recurrent neural networks (RNNs), and generative adversarial networks (GANs) are some commonly applied ANN models [143]. These models need fewer formal statistics, efficiently manage noisy data, and give higher accuracy in Scab detection, but tend toward excessive fitting due to many layers and huge computations.
7.3. Analysis of Various Classification Approaches
8. Utilization of UAV in Scab Detection
Imaging Sensors Required for UAV Monitoring
- RGB (Red–Green–Blue) Sensors: RGB spectral sensors are the visible light sources that are commonly used. These sensors measure only the intensities of three colors and evaluate each in every pixel. The naked eye is sensitive to three color bands: red, blue, and green; therefore, the RGB sensor gives images that can be easily recognized by humans. These sensors are utilized with other sensors to improve their accuracy. If a red filter replaces a NIR filter, then it is named modified RGB. These sensors are the least expensive and are easily available but give low spectral resolution images. These capture images with high spatial resolution and allow finer spatial details. These can formulate 3D models of plants and can be used for plant inspection in harsh weather. Moreover, RGB images give details on LAB where L stands for lightness and AB are dimensions of the color opponent, YCBCR where Y stands for the luma component, CB and CR are the blue difference and red difference, Hue, Saturation, and Value (HSV), and others [160]. These help in identifying diseases in plant leaves and fruits. However, their spectral range varies from 380 to 750 nm only, and this range cannot be used to identify diseases appropriately.
- Multispectral Sensors: Multispectral sensors are capable in capturing images having exceptional spatial resolution and determine reflectance in the infrared (IR) bands. These sensors use various spectral bands such as red, blue, green, NIR, and red-edge. Multiple bands in these sensors give high accuracy. These are classified into two groups according to bandwidth: broadband sensors and narrowband sensors. These allow appropriate analytics for agriculture; therefore, these are highly crucial for researchers and farmers. Multispectral together with NIR sensors form vegetable indices (VI) that rely either on NIR or other light bands [161]. For automatic disease detection, multispectral sensors capture images in both regions, namely visible and NIR. The absence of multispectral data would hinder early disease detection, pests and weed detection, and vegetation biomass calculation of plants. The drawbacks of these sensors are high cost and enhanced calibration efforts for certain tasks [53].
- Hyperspectral Sensors: The extremely capable hyperspectral images can capture images in spatial and spectral ranges. These sensors collect light with multiple narrow-size bands for every single pixel in the captured image. Furthermore, these sensors have area detectors for quantifying the captured light that resulted from the incident photon conversion into electrons [77]. This conversion is obtained through two sensors, namely, charge-coupled-device (CCD) sensors along with complementary metal-oxide–semiconductor (CMOS) sensors. These sensors are used for minimizing the shortcomings of multispectral sensors, for capturing information in lesser spectral differences, and for detecting and discriminating against target objects. The commercial success of these sensors in UAVs to measure a hundred bands and perform data processing is guaranteed. The prime advantage of these sensors in agriculture is that they can detect plant stress with the disease or pathogen responsible for it. Major limitations include higher costs and huge unnecessary data if not properly calibrated [162].
- Thermal Sensors: Thermal sensors capture the thermal energy of an object through optical lenses and IR sensors fit in thermal sensors, which data are then used to generate images with the information collected. These sensors detect the radiation related to their wavelengths and generate heat while converting these radiations into grayscale images. Furthermore, they can generate colored images with yellow representing warmer images and blue representing cooler images [163]. Their costs are relatively low and RGB sensors with a few modifications can be converted into thermal sensors. These sensors are widely used for agricultural tasks such as disease detection, irrigation management, mapping, and monitoring. These sensors generate images with comparatively low resolution and huge data, which is their major drawback [123].
- Depth Sensors: Depth sensors allow an extra depth of features in RGB pixels. The depth is the distance between an object and the depth sensor when the image is captured. These are widely equipped on UAVs for agricultural purposes and are used to enhance the accuracy of other sensors. LiDAR, red–green–blue–depth (RGB-D), and time of flight (ToF) are some depth sensors. Light detection and ranging (LiDAR) is considered the most prevalent depth sensor. The prime difference between LiDAR and RGB-D is that LiDAR implies laser pulses for distance calculation whereas RGB-D is dependent on the light reflection intensities [164]. Therefore, LiDAR is used more than RGB-D for 3D modeling, disease detection, phenotyping, etc. The major drawback is that sometimes these sensors provide lower intensity counts as these cannot detect objects after a specific distance.
9. Discussion and Conclusions
9.1. Discussion
9.2. Conclusions
10. Challenges with Future Prospects
Author Contributions
Funding
Data Availability Statement
Conflicts of Interest
Abbreviations
Acronyms | Definitions |
3D | 3-Dimensional |
5G | Fifth Generation |
AI | Artificial Intelligence |
ANN | Artificial Neural Network |
BLDC | Brushless Direct Current Motor |
BLOB | Binary, Large Object |
BQMP | Binary Quaternion-Moment-Preserving |
CCD | Charge-Coupled Device |
CFS | Correlation-based Feature Selection |
CMOS | Complementary Metal-Oxide–Semiconductor |
CNNs | Convolutional Neural Networks |
COVID-19 | Coronavirus Disease 2019 |
DCGAN | Deep Convolutional Generative Adversarial Networks |
DCNN | Deep Convolutional Neural Network |
DL | Deep Learning |
DNN | Deep Neural Network |
DT | Decision Tree |
DWT | Discrete Wavelet Transform |
ESC | Electronic Speed Controller |
Faster-RCNN | Faster-Region Based Convolutional Neural Network |
FCN | Fully Convolutional Networks |
FCNN-LDA | Faster Convolutional Neural Network–Linear Discriminant Analysis |
FPV | First-Person View |
GA | Genetic Algorithm |
GANs | Generative Adversarial Networks |
GCS | Ground Control Station |
GLCM | Gray-Level Co-occurrence Matrix |
GPS | Global Positioning System |
HI | Histogram Intersection |
HOG | Histogram of Gradients |
HSI | Hue, Saturation and Intensity |
HSV | Hue, Saturation, and Value |
iCNN | Improved Convolutional Neural Network |
IoD | Internet of Drones |
IoT | Internet of Things |
IP | Internet Protocol |
IPELM | Linear Particle Swarm Optimized Extreme Learning Machine |
IR | Infrared |
iResNet | Improved ResNet |
ISODATA | Iterative Self-Organizing Data Analysis Techniques |
Kg | Kilogram |
KNN | K Nearest Neighbors |
LDA | Linear Discriminant Analysis |
LDI | Leaf Development Index |
LiDAR | Light Detection and Ranging |
Mask R-CNN | Mask Region-Based Convolutional Neural Network |
MCNN | Multilayer Convolutional Neural Network |
MEC | Mobile Edge Computing |
Min | Minutes |
MKSVM | Multiple Kernel Support Vector Regression |
ML | Machine Learning |
NIR | Near-Infrared |
nm | Nanometer |
NN | Neural Network |
OP | Oblique Photogrammetry |
PCA | Principal Component Analysis |
PCNN | Parallel Convolution Neural Network |
PLS-DA | Partial Least-Squares Discriminant Analysis |
PUF | Physically Unclonable Function |
RF | Random Forest |
RGB | Red–Green–Blue |
RGB-D | Red–Green–Blue–Depth |
RNNs | Recurrent Neural Networks |
RPN | Regional Proposal Network |
Sec | Seconds |
SGDM | Spatial Gray-Level Dependence Matrices |
SLAM | Simultaneous Localization and Mapping |
SOM | Self-Organizing Map |
SURF | Sped-Up Robust Feature |
SVM | Support Vector Machine |
ToF | Time of Flight |
UAS | Unmanned Aerial System |
UAV | Unmanned Aerial Vehicle |
UGVs | Unmanned Ground Vehicles |
US | United States |
VI | Vegetable Indices |
YOLOv4 | You Only Look Once v4 |
VTOL | Vertical Takeoff and Landing |
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Technologies with UAVs | Usage | Reference No. |
---|---|---|
AI |
| [16] |
SLAM |
| [17] |
Camera/Sensor, improved communication protocol and speedy data processors |
| [18] |
Sensors |
| [19,20,21] |
Swarm technology, advanced systems, and IoT devices |
| [12,22,23,24,25] |
Satellites and AI, robotics with DL, and soft grippers |
| [26] |
Multirobots |
| [27] |
Challenge | Advanced Methodologies to Counter the Challenges | Reference No. |
---|---|---|
Anomalies of Symptoms and Laboratory Analysis for Scab Detection |
| [44,54,55,56] |
Capacity Limitations of UAV Components that Restrict Flying |
| [55,57,58,59,60] |
Effects of Forest Attributes on UAV and Images |
| [61,62,63,64] |
Limitations of Sensors and Factors Causing Visibility Issues in Images |
| [65,66,67,68,69] |
Requisite of Segmentation and Classification |
| [19,70,71,72,73,74] |
Application Issues of UAVs for Agricultural Purposes |
| [4,75,76,77,78,79,80,81,82,83,85,86] |
Extracted Feature | Reference No. | Feature Extraction Technique | Rosaceae Family Fruit | Accuracy | Strengths |
---|---|---|---|---|---|
Shape | [92] | Median filter and Morphological filter | Apple | NA |
|
Color | [93] | Blob analysis (Thresholding) | Apple | 91.66% |
|
Texture | [94] | GLCM | Apple | 96.43% |
|
Shape, Texture, and Color | [95] | RGB model, HSI model, and SGDM model | Apple | Training set—95.48% Test set—94.22% |
|
Deep Features | [96] | VGG-s and AlexNet-based DCNN | Apple, Peach and Cherry | 97.8% |
|
Color, Spectral, Texture, and Shape | [97] | Statistical ML algorithms | Peaches, Apples, Strawberries, and others | Higher |
|
Edges, RBG values, and Others | [98] | CNN, VGG-based CNN, and InceptionV3-based CNN | Strawberry, Blueberry, Cherry, Raspberry, Peach, Apple, and others | 98% |
|
Multiscale Features | [99] | iResNet | Apple | Original dataset—94.24% Preprocessed dataset—94.99% |
|
Grayscale, Color, and Segmented Features | [100] | CNN | Apple | 99.6% |
|
Authors | Reference No. | Segmentation Approach | Advantages |
---|---|---|---|
Douarre et al. | [110] | SegNet-based CNN |
|
Karpyshev et al. | [111] | Mask R-CNN-based DNN |
|
Logashov et al. | [112] | Computer-vision |
|
Neupane and Baysal-Gurel | [113] | ANNs, K-means, DT, SVMs, KNN, and Regression |
|
Prasad et al. | [114] | EfficientDet-based DCGAN |
|
Abade et al. | [115] | Different CNN- based architectures |
|
Ahmed and Reddy | [116] | CNN |
|
Rehman et al. | [117] | Modified mask R-CNN |
|
Afzaal et al. | [118] | Tensorflow-based mask R-CNN |
|
Liu and Wang | [119] | FCN, SegNet, UNet, and Mask R-CNN |
|
Wan et al. | [12] | Edge-based, Thresholding, and Region-based |
|
Ahmad et al. | [120] | DL |
|
Storey et al. | [121] | Mask R-CNN with ResNet-50, MobileNeaV3-Large-Mobile, and MobileNetV3-Large backbones |
|
Raman et al. | [122] | UNet with atrous skip connections |
|
Classification Algorithm/Model | Reference | Diseases-Rosaceae Fruits | Contributions | Limitations |
---|---|---|---|---|
Bayesian Decision Theory, and A-Scab Model | [90] | Scab—Apple |
|
|
GoogLeNet | [146] | Healthy, Scab, Black rot, and Cedar rust—Apples |
|
|
[147] | Healthy, Scab, Black rot, and Cedar rust—Apples |
|
| |
SVM, KNN, DT, and Naïve Bayes | [148] | Scab and Marsonina coronaria—Apples |
|
|
Fuzzy Logic | [92] | Scab—Apple |
|
|
FCNN-LDA | [149] | Healthy, Black rot, Scab, and Cedar—Apples |
|
|
PLSDA | [150] | Healthy and Scab—Apples |
|
|
Multiclass-SVM | [95] | Scab, Rust, and Black rot—Apples, Bacterial spots—Peach, and Powdery Mildew—Cherry |
|
|
Simple CNN, VGG, and InceptionV3 | [96] | Healthy, Scab and multiple diseases—Apples, Peaches, different berries, and other |
|
|
MobileNetV2 | [151] | Healthy, Rot, Mildew, and Scab—Peaches |
|
|
PCNN-IPELM | [110] | Normal, Scab, Black spot, Brown rot, and Anthracnose—Peaches |
|
|
VGG16-based iCNN | [152] | Healthy, Cedar rust, Scab, and Frogeye spot—Apples |
|
|
CNN | [99] | Healthy, Cedar rust, Scab, and Black rot—Apples |
|
|
Naïve Bayes | [93] | Healthy, Scab, Rot, and Blotch—Apples |
|
|
DenseNet121, EfficientNet, NoisyStudent, and EfficientNetB7 with Ensemble | [153] | Healthy, Cedar rust, Scab, and other diseases—Apples |
|
|
VGG, ResNetV2, InceptionV3, and MobileNetV2 | [154] | Healthy, Scab, Rust, and multiple diseases—Apples |
|
|
VGG16 | [112] | Healthy, Scab, and Rust—Apples |
|
|
Linear Regression (ML) | [29] | Scab—Apple |
|
|
InceptionV3, InceptionResNetV2, MobileNetV2, and EfficientNetB0 | [155] | Healthy, Scab, and other diseases—Apple, Peach, Strawberry, Cherry, and others |
|
|
Three CNN Models | [156] | Scab and Marsonina coronaria—Apple |
|
|
MCNN | [157] | Cedar rust, Black rot, and Scab—Apples |
|
|
Xception, EfficientDet-D0, YOLOv4, and Faster-RCNN | [158] | Scab and other diseases and pests—Apples |
|
|
References | UAV Type | Rosaceae Fruit | Imaging Sensors | Advantages |
---|---|---|---|---|
[96] | Octocopter with a 3-axis gimbal | Apple | Multispectral Thermal |
|
[165] | UAV and other airborne remote sensors | Apple and others | RGB Thermal Multispectral Hyperspectral Fluorescence |
|
[166] | UAVs and manual devices | Apple, Peaches, Strawberry, and others | Hyperspectral |
|
[110] | Autonomous mobile robot | Apple | Visible Hyperspectral Multispectral |
|
[111] | Fixed-wing and rotary-wing UAVs | Apple, Peaches, Strawberry, and others | Multispectral RGB Thermal LiDAR Hyperspectral |
|
[167] | UAV and other airborne remote sensors | Apple and others | Multispectral Hyperspectral Fluorescence Thermography |
|
[168] | Fixed-wing UAVs, rotary-wing UAVs, and VTOL | Apple, Almonds, Peaches, and others | Multispectral RGB Thermal LiDAR Hyperspectral |
|
[44] | UAV and other airborne remote sensors | Strawberry | Multispectral RGB Thermal LiDAR Fluorescence Hyperspectral |
|
[169] | UAV and near-grounding digital camera | Strawberry | RGB Digital |
|
[170] | Rotary-wing drones, fixed-wing drones, and satellites | Apples | Thermal RGB Multispectral NIR Hyperspectral |
|
[11] | UAVs and other robots | Apple, Cherry, Peaches, and others | RGB Multispectral Hyperspectral Thermal LiDAR RGB-D |
|
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© 2023 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
Share and Cite
Ali, Z.A.; Yang, C.; Israr, A.; Zhu, Q. A Comprehensive Review of Scab Disease Detection on Rosaceae Family Fruits via UAV Imagery. Drones 2023, 7, 97. https://doi.org/10.3390/drones7020097
Ali ZA, Yang C, Israr A, Zhu Q. A Comprehensive Review of Scab Disease Detection on Rosaceae Family Fruits via UAV Imagery. Drones. 2023; 7(2):97. https://doi.org/10.3390/drones7020097
Chicago/Turabian StyleAli, Zain Anwar, Chenguang Yang, Amber Israr, and Quanmin Zhu. 2023. "A Comprehensive Review of Scab Disease Detection on Rosaceae Family Fruits via UAV Imagery" Drones 7, no. 2: 97. https://doi.org/10.3390/drones7020097
APA StyleAli, Z. A., Yang, C., Israr, A., & Zhu, Q. (2023). A Comprehensive Review of Scab Disease Detection on Rosaceae Family Fruits via UAV Imagery. Drones, 7(2), 97. https://doi.org/10.3390/drones7020097