A Study Protocol on Risk Prediction Modelling of Mortality and In-Hospital Major Bleeding Following Percutaneous Coronary Intervention in an Australian Population: Machine Learning Approach
Abstract
1. Introduction
1.1. Overall Aim
1.2. Specific Aims
- To develop an ML-based preprocedural risk prediction model for 30-day all-cause mortality post-PCI in an Australian population.
- To develop an ML-based preprocedural risk prediction model for in-hospital major bleeding post-PCI in an Australian Population.
- To develop an ML-based preprocedural risk prediction model for one-year mortality post-PCI in an Australian population.
2. Methods
2.1. Study Design and Population
2.2. The Victorian Cardiac Outcomes Registry Database
- A dataset aligned with national reporting guidelines,
- Developing a centralized mechanism for providing feedback,
- Benchmarking clinical outcomes and improving patient care,
- Areas of excellence and opportunities for improvement,
- Adequacy of access to resources available,
- Development of procedures, clinical guidelines, and policies,
- Insight into the safety of cardiac services,
- Identification of population groups that may require better access to care.
2.3. Overview of Model Development
2.4. Variable Selection
2.5. Outcome Variables
2.6. Exposure Variables
2.7. Treatment of Missing Data
2.8. Analyses
2.9. Development of ML-Based Risk Prediction Models
2.10. Presentation of the Model
2.11. External Validation
2.12. Healthcare Services’ Performance
2.13. Statistical Software
2.14. Strengths and Limitations of This Study
- This study will utilize registry data comprising a large cohort of patients who underwent percutaneous coronary intervention across 33 specialized hospitals in Victoria, Australia.
- A number of sophisticated ML algorithms will be employed to develop the risk prediction models.
- The risk prediction models will undergo further validation using external data.
- The study sample will consist solely of patients from Australia, which may introduce a cultural gap and restrict the generalizability of our findings.
- The study will rely on registry data, which may restrict the inclusion of certain variables previously identified as important.
3. Discussion
Author Contributions
Funding
Institutional Review Board Statement
Informed Consent Statement
Data Availability Statement
Acknowledgments
Conflicts of Interest
Abbreviations
| AHHREC | Alfred Hospital Human Research Ethics Committee |
| ANCR | Australian National Cardiac Registry |
| BARC | Bleeding Academic Research Consortium |
| CABG | Coronary artery bypass grafting |
| CAD | Coronary artery disease |
| CoxPH | Cox proportional hazard |
| eGFR | estimated Glomerular Filtration Rate |
| GB | Gradient Booster |
| GBS | Gradient Boosting Survival |
| LR | Logistic Regression |
| LVEF | Left ventricular ejection fraction |
| ML | Machine learning |
| MLP | Multilayer perceptron |
| MI | Myocardial infarction |
| MICE | Multiple Imputations by Chained Equations |
| MUHREC | Monash University Human Research Ethics Committee |
| NCR | National Cardiac Registry |
| NDI | National Death Index |
| NHMRC | National Health and Medical Research Council |
| PCI | Percutaneous coronary intervention |
| RF | Random forest |
| RSF | Random Survival Forest |
| ROC | Receiver operating characteristics |
| TRIPOD | Transparent Reporting of a multivariable prediction model for Individual Prognosis Or Diagnosis |
| VCOR | Victorian Cardiac Outcomes Registry |
| VIF | Variance Inflation Factor |
| XGB | Extreme gradient booster |
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| Variables | Definition | Scale of Measurement | Type |
|---|---|---|---|
| Demographics and anthropometric variables | |||
| Age (group in years) | The date of birth of the patients was collected in DD/MM/YYYY format. | <80 years and ≥80 years | Binary |
| Gender | The gender (sex) of the patients | Male, female | Binary |
| Body mass index (BMI) | Body mass index was calculated using the following formula: BMI = Weight in kg/(Height in meters)2 kg/m2. Weight was measured in kg in light clothing and height in centimetres in bare or stockinged feet. Height and weight measurements could be self-reported. | Underweight (<18.5 kg/m2), normal (18.5–24.9 kg/m2), Overweight (25.0–29.9 kg/m2), obesity (30.0 kg/m2 and above) | Categorical |
| Clinical variables | |||
| Acute coronary syndrome (ACS) | ACS encompasses clinical features comprising chest pain or overwhelming shortness of breath, defined by accompanying clinical, ECG, and biochemical features. Specifically, ACS refers to unstable angina, non-ST-Elevation Myocardial Infarction (NSTEMI), and/or ST-Elevation Myocardial Infarction (STEMI). The patient must have experienced an ACS event within the last 7 days to be coded “yes” for ACS at the time of the PCI event. | No, yes | Binary |
| Cardiogenic shock | Cardiogenic shock is coded as ‘yes’ if all of the following apply: 1. Sustained (>30 min) episode of systolic blood pressure <90 mm Hg (or vasopressors required to maintain BP > 90 mm Hg); AND 2. Evidence of elevated filling pressures (e.g., pulmonary congestion on examination or chest radiograph); AND 3. Evidence of end-organ hypoperfusion (e.g., urine output 30 mL/h; or cold/diaphoretic extremities; or altered mental status, etc.). | No, yes | Binary |
| Out-of-hospital cardiac arrest | Cardiac arrest is coded as ‘yes’ if any one of the following applies: 1. If the patient has experienced an out-of-hospital cardiac arrest (i.e., the lack of effective cardiac output), including if the person was under cardiac arrest at the time of presentation to the hospital and/or the patient was intubated prior to the PCI procedure. and 2. If the patient was intubated prior to the PCI procedure. | No, yes | Binary |
| estimated Glomerular Filtration Rate (eGFR) | Record the last serum creatinine levels recorded within 60 days prior to the current PCI (in μmol/L). To convert from mmol/L to μmol/L, multiply by 1000 or move the decimal point 3 spaces to the right. The formula for eGFR uses age, gender, and the level of creatinine in blood to estimate GFR.
| Normal, mild, moderate, severe | Categorical |
| Mechanical ventricular support | If a patient required mechanical ventricular support prior to the current PCI procedure. | No, yes | Binary |
| Comorbid variables | |||
| Diabetes | If the patient had a current medical diagnosis of diabetes that required medical intervention (regardless of duration of the disease). This includes a medical diagnosis made during the current admission where medication is prescribed. The patient must be on anti-diabetic medication to lower blood sugar. Antidiabetic medications to lower blood sugar include oral hypoglycaemics and insulin. For patients whose diabetes is controlled with diet alone, code as ‘no’. | No, yes | Binary |
| Peripheral vascular disease (PVD) | If the patient displays evidence of either chronic or acute PVD. The presence of PVD must be demonstrated by vascular reconstruction or amputation for arterial insufficiency, bypass surgery, or percutaneous intervention. PVD includes the aorta, extremities, and carotid vessels. | No, yes | Binary |
| Cerebrovascular disease (CVD) | Indicate whether the patient has a history of stroke or cerebrovascular accident resulting from an ischaemic or intracerebral haemorrhagic event, only where the patient suffered a loss of neurological function with residual symptoms remaining for at least 72 h. | No, yes | Binary |
| Previous percutaneous coronary intervention (PCI) | If the patient has had a prior Percutaneous Transluminal Coronary Angioplasty, Coronary Atherectomy, and/or coronary stent performed at any time prior to the current PCI procedure. | No, yes | Binary |
| Previous coronary artery bypass grafting (CABG) | If the patient has had a prior CABG. | No, yes | Binary |
| Pre-procedural medication variables | |||
| Glycoprotein IIb/IIIa inhibitor therapy | Agents include abciximab, eptifibatide, and tirofiban | ||
| Aspirin | Agents include aspirin, astrix, cardiprin, cartia, assasantin, aspro, disprin, and solprin. | ||
| Procedural variable | |||
| Lesion location | Indicate the coronary segment that applies to each coronary lesion attempted during the current PCI. Every coronary lesion attempted during the current PCI must be recorded separately. Up to five lesions per PCI can be recorded.
| Right coronary artery, left anterior descending, circumflex artery, left main, graft | Categorical |
| Lesion complexity | Lesion type according to the ACC/AHA classification guideline for current lesion. Type A: Minimally complex, discrete (<10 mm), concentric, readily accessible, lesion in non-angulated segment (<45 degrees), smooth contour, little or no calcification, less than total occlusion, not ostial in location, no major side branch involvement, absence of thrombus. Type B: Only one type B characteristic—lesion moderately complex, tubular (10–20 mm), eccentric, moderately tortuosity of proximal segments, lesion in moderately angulated segment (>45 degrees but <90 degrees), irregular contour, moderately to heavy calcification, total occlusion less than three months old, ostial in location, bifurcation lesions requiring double guide wires, some thrombus present. Type B2: More than one type B characteristic Type C: severe complex diffuse (>20 mm), excessive tortuosity of proximal segment, lesion in extremely angulated segment >90 degrees, total occlusion greater than 3 months old or bridging collaterals, inability to protect major side branches, degenerated vein graft with friable lesion. | Type A and B Type B2 and C | Binary |
| Chronic total occlusion | Indicate whether the current lesion was presumed to be a chronic total occlusion. Chronic total occlusion is defined as being >3 months old and/or bridging collaterals. | No, yes | Binary |
| Left Ventricular Ejection Fraction (LVEF) | For all patients (excluding STEMIs), indicate whether the patient’s ventricular ejection fraction (EF) was measured (or estimated) within 6 months prior to the current procedure and up to four weeks post-discharge. This includes the period leading up to and including the cardiac catheter lab visit, after the lab visit, and up to four weeks after the patient was discharged. If multiple test results are available during this period, select the test result closest to the date/time of the current PCI. For STEMI patients, a LVEF test must have been recorded during the current admission or up to four weeks post-discharge for this item to be coded ‘yes’. For these patients, where no LVEF test was performed during the current admission or up to four weeks post-discharge, code “no”. EF tests include, but are not limited to, angiography, echocardiography, nuclear stress tests, and imaging scans. | No, yes | Binary |
| True positive | A true positive is an outcome where the model correctly predicts the positive class |
| True negative | A true negative is an outcome where the model correctly predicts the negative class |
| False positive | A false positive is an outcome where the model incorrectly predicts the positive class |
| False negative | A false negative is an outcome where the model incorrectly predicts the negative class. |
| Accuracy | Accuracy tells us the overall proportion of correct predictions made by the model (both true positives and true negatives). Model accuracy is defined as the number of classifications a model correctly predicts divided by the total number of predictions made, which can be represented as: Accuracy = (True positives + True negatives)/(True positives + True negatives + False positives + False negatives). Higher accuracy indicates higher predictive performance |
| Sensitivity/recall | Sensitivity measures the model’s ability to correctly identify patients who truly have the outcome (e.g., mortality or major bleeding) Sensitivity refers to a test’s ability to designate an individual with a given disease as positive. A highly sensitive test means that there are few false negative results, and thus fewer cases of disease are missed. Sensitivity = true positive/(false negative + true positive) Higher sensitivity indicates higher predictive performance |
| Specificity | Specificity measures the model’s ability to correctly identify patients who do not have the outcome. Specificity measures the proportion of true negatives that are correctly identified by the model. Specificity = true negative/(true negative + false positive) Higher specificity indicates higher predictive performance |
| Precision | Precision measures the proportion of correctly predicted positive cases out of all predicted positive cases Precision ensures clinicians trust the model’s positive predictions, making it valuable for decision-making and resource allocation. High precision indicates that when the model flags a patient as “high risk” (or the test gives a positive result), it is usually correct, whereas low precision means that many patients identified as “at risk” do not actually experience the outcome, leading to false alarms and potentially unnecessary interventions. The formula for precision (also called positive predictive value, PPV) is: Precision = True positive/(True positive + False positive) A higher precision value indicates higher predictive performance |
| F1 score | The F1 score is the harmonic mean of precision and recall, balancing both metrics. It is calculated as follows: F1 = 2∗(Precision*recall)/(Precision + Recall) The F1 score provides a balanced measure of a model’s ability to correctly identify patients at risk while minimizing false alarms. It combines both precision (how often a predicted “high risk” is truly correct) and recall/sensitivity (how well the model captures all true high-risk patients). A high F1 score means the model not only identifies most patients who will develop the outcome but also avoids over-predicting risk, making it useful in guiding clinical decision-making where both missed cases and false positives carry important consequences. Interpretation:
The F1 score is crucial for imbalanced datasets, where accuracy alone can be misleading. |
| Receiver Operating Characteristics (ROC) | The ROC-AUC reflects how well a risk prediction model can discriminate between patients who will experience an adverse outcome (e.g., death or major bleeding) and those who will not. An AUC close to 1.0 indicates excellent discrimination, meaning the model reliably assigns higher risk scores to patients who truly experience the outcome compared to those who do not. An AUC around 0.5 suggests no better than chance, while values between 0.7 and 0.8 are considered acceptable and above 0.8 good for clinical use. In practice, a higher ROC-AUC means clinicians can more confidently use the model for risk stratification, tailoring interventions, and improving patient management decisions. The plot of sensitivity versus 1-Specificity is called the receiver operating characteristic (ROC) curve and the area under the curve (AUC). The mathematical formula of AUC is as follows: ROC = |
| Concordance Index (C-index) | The C-index is a commonly used metric to evaluate the predictive accuracy of survival models. It measures the model’s ability to correctly rank pairs of individuals based on their predicted risk scores relative to their actual survival times. Specifically, it estimates the probability that, for a randomly selected pair of patients, the one who experiences the event earlier also has a higher predicted risk. The C-index ranges from 0.5 (no better than random chance) to 1.0 (perfect prediction). It naturally handles censored data by only considering comparable pairs where the order of events can be determined. A higher C-index indicates a better discriminative ability of the survival model when distinguishing between high-risk and low-risk individuals. The C-index for survival data can be expressed as follows:
|
| Brier score | The Brier Score is a measure of the accuracy of probabilistic predictions. It evaluates how close the predicted probabilities are to the actual binary outcomes. Brier score = 1/N where
The Brier Score ranges from 0 to 1, where 0 indicates perfect predictions, 1 represents completely incorrect predictions, and lower scores signify better calibration and accuracy of probabilistic predictions. In practice, a lower Brier score indicates that clinicians can trust the model’s probability estimates for individual patients, making it more useful for guiding shared decision-making, personalized care, and risk communication with patients. |
| Integrated Brier Score (IBS) | The IBS is a metric used to evaluate the overall accuracy of survival models over time. It measures the mean squared difference between the predicted survival probabilities and the actual survival status, integrated over a specified time interval. The Brier score at a specific time t is calculated as follows: BS(t) = where
The IBS is the time-integral of the Brier score over the interval [0, τ], usually normalized by the length of the interval: IBS = Lower IBS values indicate better prediction accuracy, with 0 being perfect prediction. |
| Items | Hyperparameter Optimization | Cross-Validation (k-Fold) | Parameters | Thresholds |
|---|---|---|---|---|
| Gradian Booster (GB) | Grid search | 10 folds | n_estimators, min_samples_split, min_sample_leaf, learning_rate, learning_rate, max_features, sub_smaple, scoring, n_jobs, random_state | 0.5 |
| Logistic Regression (LR) | Grid search | 10 folds | random_state, C, penalty, solver, scoring | 0.5 |
| Random Forest (RF) | Grid search | 10 folds | n_estimators, min_samples_split, max_features | 0.5 |
| Extreme Gradient Booster (XGB) | Grid search | 10 folds | random_state, objective, alpha, gamme, eval_metrics, eta, learning_rate, max_delta_step, nthread, n_estimators, max_depth, min_child_weight, colsample_bytree, colsample_bylevel, scoring | 0.5 |
| Cox Proportional hazard model (CoxPH) | 10 folds | Penalizer, random_state | ||
| Gradient Boosting Survival (GBS) | 10 folds | n_estimators, learning_rate, max_depth, subsample, random_state | ||
| Multilayer Perceptron (MLP) | 10 folds | fc1, fc2, fc_event, fc_time | ||
| Random Survival Forest Survival (RSF) | 10 folds | n_estimators, min_samples_split, random_state |
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Chowdhury, M.R.K.; Rashid, M.; Stub, D.; Dinh, D.; Karim, M.N.; Billah, B. A Study Protocol on Risk Prediction Modelling of Mortality and In-Hospital Major Bleeding Following Percutaneous Coronary Intervention in an Australian Population: Machine Learning Approach. Methods Protoc. 2025, 8, 148. https://doi.org/10.3390/mps8060148
Chowdhury MRK, Rashid M, Stub D, Dinh D, Karim MN, Billah B. A Study Protocol on Risk Prediction Modelling of Mortality and In-Hospital Major Bleeding Following Percutaneous Coronary Intervention in an Australian Population: Machine Learning Approach. Methods and Protocols. 2025; 8(6):148. https://doi.org/10.3390/mps8060148
Chicago/Turabian StyleChowdhury, Mohammad Rocky Khan, Mamunur Rashid, Dion Stub, Diem Dinh, Md Nazmul Karim, and Baki Billah. 2025. "A Study Protocol on Risk Prediction Modelling of Mortality and In-Hospital Major Bleeding Following Percutaneous Coronary Intervention in an Australian Population: Machine Learning Approach" Methods and Protocols 8, no. 6: 148. https://doi.org/10.3390/mps8060148
APA StyleChowdhury, M. R. K., Rashid, M., Stub, D., Dinh, D., Karim, M. N., & Billah, B. (2025). A Study Protocol on Risk Prediction Modelling of Mortality and In-Hospital Major Bleeding Following Percutaneous Coronary Intervention in an Australian Population: Machine Learning Approach. Methods and Protocols, 8(6), 148. https://doi.org/10.3390/mps8060148

