Electron Density and Effective Atomic Number as Quantitative Biomarkers for Differentiating Malignant Brain Tumors: An Exploratory Study with Machine Learning
Simple Summary
Abstract
1. Introduction
2. Materials and Methods
2.1. Study Population
2.2. Image Acquisition
2.3. Image Analysis
2.4. ML Analysis
2.4.1. Computational Environment
2.4.2. Data Splitting Strategy
2.4.3. Feature Selection and Training
2.4.4. Independent Test Evaluation
2.5. Statistical Analysis
3. Results
3.1. Patient Characteristics
3.2. Interobserver Agreement
3.3. Data Comparisons
3.4. Correlation Analysis
3.5. ML Analysis
4. Discussion
5. Conclusions
Supplementary Materials
Author Contributions
Funding
Institutional Review Board Statement
Informed Consent Statement
Data Availability Statement
Conflicts of Interest
Abbreviations
| ADC | Apparent diffusion coefficient |
| rADC | Relative apparent diffusion coefficient |
| AUC | Area under the receiver operating characteristic curve |
| BM | Brain metastasis |
| CTconv | Conventional 120-kVp CT |
| DECT | Dual-energy CT |
| DWI | Diffusion weighted imaging |
| ED | Electron density |
| ICC | Intraclass correlation coefficient |
| Lasso | Least absolute shrinkage and selection operator |
| ML | Machine learning |
| N:C ratio | Nucleus-to-cytoplasmic ratio |
| PCNSL | Primary central nervous system lymphoma |
| RFE | Recursive feature elimination |
| ROI | Region of interest |
| Zeff | Effective atomic number |
References
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| Characteristics | BMs (n = 36) | Glioblastomas (n = 64) | PCNSLs (n = 36) | p-Value |
|---|---|---|---|---|
| Age (y) | 65 ± 12 | 69 ± 14 | 70 ± 13 | 0.09 |
| Sex | 0.61 | |||
| Male | 26 | 40 | 24 | |
| Female | 10 | 24 | 12 | |
| Solitary/multiple | 0.08 | |||
| Solitary | 25 | 51 | 21 | |
| Multiple | 11 | 13 | 15 | |
| Primary site (metastases) | ||||
| Lung | 19 | N/A | N/A | |
| Breast | 5 | N/A | N/A | |
| Colon | 2 | N/A | N/A | |
| Stomach | 2 | N/A | N/A | |
| Uterus | 1 | N/A | N/A | |
| Bladder | 1 | N/A | N/A | |
| Ureter | 1 | N/A | N/A | |
| Soft tissue | 1 | N/A | N/A | |
| Skin | 1 | N/A | N/A | |
| Bone | 1 | N/A | N/A | |
| Unknown | 2 | N/A | N/A | |
| IDH-status (glioblastoma) | ||||
| Wild type | N/A | 64 | N/A | |
| Subtype (PCNSL) | ||||
| DLBCL | N/A | N/A | 36 |
| p-Value | |||||||
|---|---|---|---|---|---|---|---|
| BMs | Glioblastomas | PCNSLs | Kruskal–Wallis Test | BMs vs. Glioblastomas | BM vs. PCNSLs | Glioblastomas vs. PCNSLs | |
| CTconv (HU) | |||||||
| 10th | 15.83 ± 4.79 | 15.82 ± 4.83 | 19.93 ± 4.27 | <0.001 | >0.99 | 0.002 | <0.001 |
| Mean | 30.01 ± 4.66 | 29.98 ± 4.90 | 34.05 ± 4.84 | <0.001 | >0.99 | 0.002 | <0.001 |
| 90th | 43.11 ± 4.55 | 43.09 ± 7.89 | 47.00 ± 4.63 | <0.001 | >0.99 | 0.002 | <0.001 |
| ED (%EDW) | |||||||
| 10th | 102.11 ± 0.56 | 102.07 ± 0.52 | 102.37 ± 0.47 | 0.01 | >0.99 | 0.16 | 0.07 |
| Mean | 102.82 ± 0.50 | 102.70 ± 0.45 | 102.94 ± 0.50 | 0.06 | 0.62 | >0.99 | 0.06 |
| 90th | 103.38 ± 0.44 | 103.21 ± 0.57 | 103.38 ± 0.47 | 0.06 | 0.16 | >0.99 | 0.16 |
| Zeff | |||||||
| 10th | 7.26 ± 0.06 | 7.29 ± 0.07 | 7.33 ± 0.08 | <0.001 | 0.02 | <0.001 | 0.02 |
| Mean | 7.33 ± 0.06 | 7.36 ± 0.07 | 7.40 ± 0.07 | <0.001 | 0.08 | <0.001 | 0.01 |
| 90th | 7.39 ± 0.07 | 7.42 ± 0.10 | 7.45 ± 0.08 | <0.001 | 0.26 | <0.001 | 0.02 |
| rADC | |||||||
| 10th | 1.22 ± 0.21 | 1.26 ± 0.24 | 0.93 ± 0.16 | <0.001 | >0.99 | <0.001 | <0.001 |
| Mean | 1.64 ± 0.32 | 1.60 ± 0.30 | 1.28 ± 0.27 | <0.001 | >0.99 | <0.001 | <0.001 |
| 90th | 2.14 ± 0.51 | 1.96 ± 0.43 | 1.70 ± 0.50 | <0.001 | 0.20 | <0.001 | <0.001 |
| AUC (95% CI) | |||
|---|---|---|---|
| Parameter | BMs vs. Glioblastomas | BMs vs. PCNSLs | Glioblastomas vs. PCNSLs |
| CTconv | |||
| 10th | 0.49 (0.39–0.59) | 0.73 (0.61–0.83) | 0.73 (0.63–0.82) |
| Mean | 0.51 (0.41–0.62) | 0.74 (0.62–0.83) | 0.76 (0.66–0.84) |
| 90th | 0.54 (0.44–0.64) | 0.73 (0.61–0.83) | 0.76 (0.67–0.84) |
| Zeff | |||
| 10th | 0.66 (0.56–0.76) | 0.79 (0.68–0.88) | 0.66 (0.56–0.75) |
| Mean | 0.63 (0.53–0.73) | 0.77 (0.66–0.86) | 0.68 (0.58–0.77) |
| 90th | 0.60 (0.50–0.70) | 0.75 (0.63–0.84) | 0.67 (0.57–0.76) |
| rADC | |||
| 10th | 0.55 (0.45–0.65) | 0.88 (0.78–0.94) | 0.88 (0.80–0.94) |
| Mean | 0.53 (0.43–0.63) | 0.81 (0.69–0.89) | 0.78 (0.69–0.86) |
| 90th | 0.61 (0.51–0.71) | 0.74 (0.63–0.84) | 0.68 (0.57–0.77) |
| Test Set | ||||||
|---|---|---|---|---|---|---|
| Model | Accuracy | Precision | Recall | F1 | AUC | |
| BMs vs. Glioblastomas | ||||||
| DECT | Weighted ensemble | 0.65 | 0.5 | 1 | 0.67 | 0.83 |
| rADC | Weighted ensemble | 0.65 | 0 | 0 | 0 | 0.62 |
| DECT + rADC | Weighted ensemble | 0.65 | 0 | 0 | 0 | 0.76 |
| BM vs. PCNSLs | ||||||
| DECT | Weighted ensemble | 0.83 | 0.86 | 0.86 | 0.86 | 0.91 |
| rADC | Weighted ensemble | 0.92 | 1 | 0.88 | 0.93 | 1 |
| DECT + rADC | Weighted ensemble | 1 | 1 | 1 | 1 | 1 |
| Glioblastomas vs. PCNSLs | ||||||
| DECT | Weighted ensemble | 0.68 | 0.85 | 0.73 | 0.79 | 0.82 |
| rADC | Weighted ensemble | 0.84 | 1 | 0.8 | 0.89 | 0.94 |
| DECT + rADC | Weighted ensemble | 0.74 | 1 | 0.67 | 0.8 | 0.93 |
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Nakano, T.; Hirahara, D.; Hasegawa, T.; Kamimura, K.; Nakajo, M.; Kamizono, J.; Takumi, K.; Nakajo, M.; Ejima, F.; Nakanosono, R.; et al. Electron Density and Effective Atomic Number as Quantitative Biomarkers for Differentiating Malignant Brain Tumors: An Exploratory Study with Machine Learning. Tomography 2025, 11, 120. https://doi.org/10.3390/tomography11110120
Nakano T, Hirahara D, Hasegawa T, Kamimura K, Nakajo M, Kamizono J, Takumi K, Nakajo M, Ejima F, Nakanosono R, et al. Electron Density and Effective Atomic Number as Quantitative Biomarkers for Differentiating Malignant Brain Tumors: An Exploratory Study with Machine Learning. Tomography. 2025; 11(11):120. https://doi.org/10.3390/tomography11110120
Chicago/Turabian StyleNakano, Tsubasa, Daisuke Hirahara, Tomohito Hasegawa, Kiyohisa Kamimura, Masanori Nakajo, Junki Kamizono, Koji Takumi, Masatoyo Nakajo, Fumitaka Ejima, Ryota Nakanosono, and et al. 2025. "Electron Density and Effective Atomic Number as Quantitative Biomarkers for Differentiating Malignant Brain Tumors: An Exploratory Study with Machine Learning" Tomography 11, no. 11: 120. https://doi.org/10.3390/tomography11110120
APA StyleNakano, T., Hirahara, D., Hasegawa, T., Kamimura, K., Nakajo, M., Kamizono, J., Takumi, K., Nakajo, M., Ejima, F., Nakanosono, R., Yamagishi, R., Kanzaki, F., Muraoka, H., Higa, N., Yonezawa, H., Kitazono, I., Kwon, J., Pahn, G., Langzam, E., ... Yoshiura, T. (2025). Electron Density and Effective Atomic Number as Quantitative Biomarkers for Differentiating Malignant Brain Tumors: An Exploratory Study with Machine Learning. Tomography, 11(11), 120. https://doi.org/10.3390/tomography11110120

