Molecular Dynamics Simulation: Tendency for CO2 Adsorption in Amphiphilic Cellulose-Derived Interpenetrating Network Gels
Abstract
1. Introduction
2. Results and Discussion
2.1. Interpenetrating Network Characterization
2.1.1. Scanning Electron Microscope
2.1.2. Force Field Selection for Molecular Dynamics Simulation
2.2. Molecular Dynamics Simulation Investigation
2.2.1. CO2 Adsorption Isotherm
2.2.2. Sorption Sites
Binding Energies
2.2.3. Effect of Brine Salinity and Hardness on CO2 Adsorption
Isotherm Fitting
3. Conclusions
4. Materials and Methods
4.1. Formulation and Characterization
4.2. Molecular Dynamics Simulation
Author Contributions
Funding
Data Availability Statement
Conflicts of Interest
References
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| Element Name | Atomic Conc. (%) | Weight Conc. (%) |
|---|---|---|
| Nitrogen | 40.32 | 38.74 |
| Carbon | 32.58 | 25.36 |
| Oxygen | 17.37 | 17.41 |
| Chlorine | 5.33 | 13.96 |
| Sulphur | 4.40 | 4.53 |
| Element Name | Atomic Conc. (%) | Weight Conc. (%) |
|---|---|---|
| Nitrogen | 33.24 | 28.12 |
| Carbon | 32.19 | 25.86 |
| Oxygen | 17.11 | 17.56 |
| Chlorine | 12.57 | 17.41 |
| Sulphur | 4.89 | 11.05 |
| DPEA-Cell-OSO3− I | DPEA-Cell-OSO3− II | |||
|---|---|---|---|---|
| Force Field | Initial Structure (kcal/mol) | Final Structure (kcal/mol) | Initial Structure (kcal/mol) | Final Structure (kcal/mol) |
| DREIDING | 4.4 × 1017 | 103.03 | 1.5 × 1015 | 113.46 |
| UNIVERSAL | 2.1 × 1017 | 400.89 | 1.3 × 1015 | 321.16 |
| COMPASS III | 6.6 × 1012 | 2.20 | 2 × 1011 | 13.07 |
| CO2 Sorption Hotspots | Molecular Fragments’ Lowest Energy Configuration | Interaction Parameter at 348.15 K | Binding Energy at 348.15 K (Kcal/mol) | Average Binding Energy (Kcal/mol) | Average Van Der Waals Energy (Kcal/mol) | Average Electrostatic Energy (Kcal/mol) |
|---|---|---|---|---|---|---|
| Hotspot 1 (alkyl chain and amine group) | ![]() | 19.85 | −1.23 | −1.10 | −1.87 | |
![]() | −0.01 | −0.47 | −0.45 | −0.78 | −0.04 | |
| Hotspot 2 (Nitrogen proton, sulphate ion and acrylamide chain) | ![]() | −50.93 | −0.49 | −0.39 | −0.41 | −0.82 |
![]() | −16.44 | −0.94 | −0.72 | −1.47 | −0.62 | |
![]() | 1.68 | −0.81 | −0.72 | −1.53 | −0.10 | |
| Hotspot 3 (β-REU with sulphate ion) | ![]() | 78.36 | −1.33 | −0.94 | −1.86 | −0.96 |
| Hotspot 4 (alkyl chain and carbonyl group) | ![]() | 19.91 | −1.23 | −1.10 | −1.87 | |
![]() | −0.01 | −0.43 | −0.42 | −0.58 | −0.08 | |
| Hotspot 5 (amide group and the glucose molecule) | ![]() | 0.21 | −0.58 | −0.54 | −0.95 | −0.10 |
![]() | 5.88 | −1.02 | −0.84 | −2.12 | −0.09 | |
| Hotspot 6 (Glucose molecule, amide group and alkyl chain) | ![]() | 5.88 | −1.02 | −0.84 | −2.11 | −0.10 |
![]() | 0.21 | −0.59 | −0.54 | −0.94 | −0.11 | |
![]() | 19.91 | −1.23 | −1.10 | −1.87 | ||
| Hotspot 7 (unsaturated carbon–carbon double bond) | ![]() | 0.81 | −0.71 | −0.65 | −1.21 | −0.09 |
| Model | Equilibrium Parameters | D-I-AM-MBA-G-Cl | D-II-AM-MBA-G-Cl |
|---|---|---|---|
| Langmuir | Qmax (v/v) | 0.1414 | 0.2091 |
| b (1/kPa) | 0.0002 | 0.0015 | |
| R2 | 0.9991 | 0.9651 | |
| RMSE (v/v) | 0.0012 | 0.0116 | |
| ARE% | 8.5961 | 7.6683 | |
| Freundlich | Kf ((v/v)·kPa−1/n) | 0.0009 | 0.0188 |
| n | 2.0425 | 3.9684 | |
| R2 | 0.9742 | 0.9281 | |
| RMSE (v/v) | 0.0061 | 0.0167 | |
| ARE% | 40.5459 | 24.0222 | |
| Temkin | A (1/(v/v)) | 0.0051 | 0.0256 |
| B (RT/b) | 0.0212 | 0.0355 | |
| R2 | 0.9270 | 0.9885 | |
| RMSE (v/v) | 0.0103 | 0.0067 | |
| ARE% | 82.3102 | 7.7156 | |
| Sips | K (1/kPa) | 0.0001 | 0.0009 |
| Qm (v/v) | 0.1514 | 0.2409 | |
| n | 0.9203 | 0.6948 | |
| R2 | 0.9996 | 0.9796 | |
| RMSE (v/v) | 0.0008 | 0.0089 | |
| ARE% | 3.5773 | 10.2995 | |
| Toth | Qm (v/v) | 0.1563 | 0.2568 |
| B (1/kPa) | 0.0002 | 0.0032 | |
| t | 0.8371 | 0.5431 | |
| R2 | 0.9995 | 0.9832 | |
| RMSE (v/v) | 0.0009 | 0.0081 | |
| ARE% | 5.1586 | 9.3859 | |
| Redlich–Peterson | KRP (1/(v/v)) | 0.0001 | 0.0003 |
| aRP (1/(v/v)) | 0.0035 | 0.0015 | |
| g | 0.8164 | 0.9844 | |
| R2 | 0.9654 | 0.9681 | |
| RMSE (v/v) | 0.0071 | 0.0111 | |
| ARE% | 37.5747 | 8.1759 |
| Parameter | Ratio | Probability |
|---|---|---|
| Exchange | 2 | 0.39 |
| Conformer | 1 | 0.20 |
| Rotate | 1 | 0.20 |
| Translate | 1 | 0.20 |
| Regrow | 0.1 | 0.02 |
| S/N | Molecule | Weight % |
|---|---|---|
| 1 | Polyacrylamide–Methylene Bisacrylamide | 46.50 |
| 2 | DPEA-Cell-OSO3− I/DPEA-Cell-OSO3− II | 52.41 |
| 3 | Guanidine Hydrochloride | 0.42 |
| 4 | Chloride ion | 0.11 |
| 5 | Sodium ion | 0.07 |
| 6 | Calcium ion | 0.04 |
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Afolabi, F.; Amir, Z.; Halilu, A.; Abdul Patah, M.F.; Ngouangna, E.N.; Joledo, A.O.; Murungi, P.I. Molecular Dynamics Simulation: Tendency for CO2 Adsorption in Amphiphilic Cellulose-Derived Interpenetrating Network Gels. Gels 2026, 12, 537. https://doi.org/10.3390/gels12060537
Afolabi F, Amir Z, Halilu A, Abdul Patah MF, Ngouangna EN, Joledo AO, Murungi PI. Molecular Dynamics Simulation: Tendency for CO2 Adsorption in Amphiphilic Cellulose-Derived Interpenetrating Network Gels. Gels. 2026; 12(6):537. https://doi.org/10.3390/gels12060537
Chicago/Turabian StyleAfolabi, Funsho, Zulhelmi Amir, Ahmed Halilu, Muhamad Fazly Abdul Patah, Eugene N. Ngouangna, Akorede O. Joledo, and Pearl I. Murungi. 2026. "Molecular Dynamics Simulation: Tendency for CO2 Adsorption in Amphiphilic Cellulose-Derived Interpenetrating Network Gels" Gels 12, no. 6: 537. https://doi.org/10.3390/gels12060537
APA StyleAfolabi, F., Amir, Z., Halilu, A., Abdul Patah, M. F., Ngouangna, E. N., Joledo, A. O., & Murungi, P. I. (2026). Molecular Dynamics Simulation: Tendency for CO2 Adsorption in Amphiphilic Cellulose-Derived Interpenetrating Network Gels. Gels, 12(6), 537. https://doi.org/10.3390/gels12060537















