Taxonomy and Phylogeny of Hyphomycetous Muriform Conidial Taxa from the Tibetan Plateau, China
Abstract
1. Introduction
2. Materials and Methods
2.1. Collection, Morphological Examination and Isolation
2.2. DNA Extraction, PCR Amplification and Sequencing
2.3. Phylogenetic Analyses
Species | Isolate No. | GenBank Accession No. | ||||
---|---|---|---|---|---|---|
ITS | LSU | SSU | TEF1-α | References | ||
Aquastroma magniostiolatum | MFLUCC 20-0112 | MT772005 | MT772011 | – | MT777678 | [50] |
Aquastroma magniostiolatum | CBS 139680 | NR_153583 | NG_056936 | NG_061000 | – | [21] |
Ceratostomella cuspidata | ICMP 17629 | KT991671 | FJ617558 | KT991642 | – | [51] |
Ceratostomella pyrenaica | CBS 129343 | KT991672 | KY931835 | KY931893 | – | [51] |
Decaisnella formosa | BCC 25616 | – | GQ925846 | GQ925833 | GU479851 | [52] |
Decaisnella formosa | BCC 25617 | – | GQ925847 | GQ925834 | GU479850 | [52] |
Lignosphaeria fusispora | MFLUCC 11-0377 | NR_164233 | KP888646 | – | – | [53] |
Lignosphaeria thailandica | MFLUCC 11-0376 | KP899139 | NG_069268 | – | – | [53] |
Lonicericola fuyuanensis | MFLU 19-2850 | NR_172419 | NG_073809 | NG_070329 | MN938324 | [54] |
Lonicericola hyaloseptispora | KUMCC 18-0149 | NR_164294 | NG_066434 | NG_067680 | – | [55] |
Lonicericola hyaloseptispora | KUMCC 18-0150 | MK098194 | MK098200 | MK098206 | MK098210 | [55] |
Multilocularia bambusae | MFLUCC 11-0180 | NR_148099 | NG_059654 | NG_061229 | KU705656 | [56] |
Multiseptospora thailandica | MFLUCC 11-0183 | KP744447 | KP744490 | KP753955 | KU705657 | [24] |
Multiseptospora thailandica | MFLUCC 12-0006 | KU693448 | KU693441 | KU693445 | KU705660 | [24] |
Multiseptospora thysanolaenae | MFLUCC 11-0202 | – | NG_059655 | NG_063600 | KU705658 | [56] |
Neoaquastroma bauhiniae | MFLUCC 16-0398 | MH025952 | MH023319 | MH023315 | MH028247 | [57] |
Neoaquastroma cylindricum | MFLUCC 19-0489 | MN473060 | MN473054 | MN473048 | MN481600 | [58] |
Neoaquastroma guttulatum | MFLUCC 14-0917 | KX949739 | KX949740 | KX949741 | KX949742 | [59] |
Neoaquastroma krabiense | MFLUCC 16-0419 | NR_165218 | NG_067815 | NG_067670 | MH028249 | [57] |
Parabambusicola aquatica | MFLUCC 18-1140 | NR_171877 | NG_073791 | – | – | [16] |
Parabambusicola bambusina | KH 139 | LC014579 | AB807537 | AB797247 | AB808512 | [21] |
Parabambusicola bambusina | KT 2637 | LC014580 | AB807538 | AB797248 | AB808513 | [21] |
Parabambusicola thysanolaenae | KUMCC 18-0147 | NR_164044 | NG_066435 | NG_067681 | MK098209 | [55] |
Parabambusicola thysanolaenae | KUMCC 18-0148 | MK098193 | MK098198 | MK098202 | MK098211 | [55] |
Paramonodictys dispersa | KUNCC 10788 | ON261165 | OQ146988 | OQ135189 | OQ943185 | This study |
Paramonodictys dispersa | KUNCC 10782 | ON261159 | OQ146982 | OQ135187 | OQ943183 | This study |
Paramonodictys dispersa | KUNCC 10783 | ON261160 | OQ146983 | OQ135188 | OQ943184 | This study |
Paramonodictys hongheensis | KUMCC 21-0343 | OL436229 | OL436227 | OL436232 | OL505582 | [20] |
Paramonodictys hongheensis | KUMCC 21-0346 | OL436235 | OL436224 | OL436225 | OL505583 | [20] |
Paramonodictys solitarius | GZCC 20-0007 | MN901152 | MN897835 | MN901118 | MT023012 | [18] |
Paramonodictys yunnanensis | KUMCC 21-0337 | OL436231 | OL436226 | OL436230 | OL505585 | [20] |
Paramonodictys yunnanensis | KUMCC 21-0347 | OL436233 | OL436228 | OL436234 | OL505586 | [20] |
Paratrimmatostroma kunmingensis | HKAS 102224A | MK098192 | MK098196 | MK098204 | MK098208 | [55] |
Paratrimmatostroma kunmingensis | HKAS 102224B | MK098195 | MK098201 | MK098207 | – | [55] |
Paradictyoarthrinium aquatica | MFLUCC 16-1116 | MG747496 | MG747495 | – | – | [26] |
Paradictyoarthrinium diffractum | MFLUCC 13-0466 | KP744455 | KP744498 | KP753960 | – | [24] |
Paradictyoarthrinium diffractum | MFLUCC 12-0557 | KP744454 | KP744497 | – | – | [24] |
Paradictyoarthrinium hydei | MFLUCC 17-2512 | MG747498 | MG747497 | – | – | [26] |
Paradictyoarthrinium hydei | KUNCC 10440 | OQ135178 | OQ146990 | OQ135190 | OQ943182 | This study |
Paradictyoarthrinium hydei | KUNCC 10441 | OQ135179 | OQ146991 | OQ135191 | OQ943181 | This study |
Paradictyoarthrinium tectonicola | MFLUCC 13-0465 | KP744456 | KP744500 | – | – | [24] |
Phaeoseptum aquaticum | CBS 123113 | KY940803 | JN644072 | – | – | [33] |
Phaeoseptum carolshearerianum | NFCCI 4221 | MK307810 | MK307813 | MK307816 | MK309874 | [34] |
Phaeoseptum carolshearerianum | NFCCI 4384 | MK307812 | MK307815 | MK307818 | MK309876 | [34] |
Phaeoseptum hydei | MFLUCC 17-0801 | MT240622 | MT240623 | MT240624 | MT241506 | [60] |
Phaeoseptum mali | MFLUCC 17-2108 | MK659580 | MK625197 | – | MK647990 | [61] |
Phaeoseptum mali | KUMCC 21-0335 | OL413027 | OL413028 | – | OL690512 | [61] |
Phaeoseptum manglicola | NFCCI-4666 | MK307811 | MK307814 | MK307817 | MK309875 | [34] |
Phaeoseptum terricola | MFLUCC 10-0102 | MH105778 | MH105779 | NG_065749 | MH105781 | [31] |
Pleopunctum clematidis | MFLUCC 17-2091 | MT310618 | MT214573 | – | MT394632 | [35] |
Pleopunctum ellipsoideum | MFLUCC 19-0390 | MK804512 | MK804517 | MK804514 | MK828510 | [36] |
Pleopunctum ellipsoideum | KUNCC 10784 | ON261161 | OQ146984 | – | OQ943188 | This study |
Pleopunctum megalosporum | KUNCC 10785 | ON261162 | OQ146985 | – | OQ943186 | This study |
Pleopunctum megalosporum | KUNCC 10442 | OQ135180 | OQ146986 | – | OQ943187 | This study |
Pleopunctum menglaense | KUMCC 21-0025 | ON009118 | ON009102 | ON009086 | – | [32] |
Pleopunctum menglaense | KUMCC 21-0026 | ON009119 | ON009103 | ON009087 | – | [32] |
Pleopunctum multicellularum | KUNCC 10789 | ON261166 | OQ146989 | – | OQ943190 | This study |
Pleopunctum multicellularum | KUNCC 10781 | ON261158 | OQ146981 | – | OQ943189 | This study |
Pleopunctum multicellularum | KUNCC 10778 | ON261155 | OQ146978 | – | – | This study |
Pleopunctum pseudoellipsoideum | MFLUCC 19-0391 | MK804513 | MK804518 | – | MK828511 | [36] |
Pleopunctum pseudoellipsoideum | KUNCC 10779 | ON261156 | OQ146979 | – | OQ943191 | This study |
Pleopunctum pseudoellipsoideum | KUNCC 10786 | ON261163 | – | – | OQ943192 | This study |
Pleopunctum rotundatum | KUNCC 10787 | ON261164 | OQ146987 | – | OQ943194 | This study |
Pleopunctum rotundatum | KUNCC 10780 | ON261157 | OQ146980 | – | OQ943193 | This study |
Pleopunctum thailandicum | MFLUCC 21-0039 | MZ198894 | MZ198896 | – | MZ172461 | [37] |
Pseudomonodictys tectonae | MFLUCC 12-0552 | – | NG_059590 | NG_061213 | KT285571 | [62] |
Thyridaria macrostomoides | GKM 1033 | – | GU385190 | – | GU327776 | [53] |
Thyridaria macrostomoides | GKM 224N | – | GU385191 | – | GU327777 | [53] |
Xenomassariosphaeria clematidis | MFLUCC 14-0923 | MT310616 | MT214571 | – | MT394630 | [35] |
Xenomassariosphaeria rosae | MFLUCC 15-0179 | – | NG_059883 | MG829192 | – | [25] |
Xenomassariosphaeria rosae | CBS 612.86 | MH862004 | MH873692 | EF165035 | [25] |
3. Results
3.1. Phylogenetic Analyses
3.2. Taxonomy
4. Discussion
Author Contributions
Funding
Institutional Review Board Statement
Informed Consent Statement
Data Availability Statement
Acknowledgments
Conflicts of Interest
References
- Liu, X.; Chen, B. Climatic warming in the Tibetan Plateau during recent decades. Int. J. Climatol. J. R. Meteorol. Soc. 2000, 20, 1729–1742. [Google Scholar] [CrossRef]
- Guo, B.; Han, B.; Yang, F.; Chen, S.; Liu, Y.; Yang, W. Determining the Contributions of Climate Change and Human Activities to the Vegetation NPP Dynamics in the Qinghai-Tibet Plateau, China, from 2000 to 2015. Environ. Monit. Assess. 2020, 192, 1–18. [Google Scholar] [CrossRef] [PubMed]
- Manish, K.; Pandit, M.K. Geophysical Upheavals and Evolutionary Diversification of Plant Species in the Himalaya. PeerJ 2018, 6, e5919. [Google Scholar] [CrossRef] [PubMed]
- Wang, Z.; Zhang, Y.; Yang, Y.; Zhou, W.; Gang, C.; Zhang, Y.; Li, J.; An, R.; Wang, K.; Odeh, I.; et al. Quantitative Assess the Driving Forces on the Grassland Degradation in the Qinghai-Tibet Plateau, in China. Ecol. Inf. 2016, 33, 32–44. [Google Scholar] [CrossRef]
- Xu, W.; Dong, W.J.; Fu, T.T.; Gao, W.; Lu, C.Q.; Yan, F.; Wu, Y.H.; Jiang, K.; Jin, J.Q.; Chen, H.M.; et al. Herpetological Phylogeographic Analyses Support a Miocene Focal Point of Himalayan Uplift and Biological Diversification. Natl. Sci. Rev. 2021, 8, nwaa263. [Google Scholar] [CrossRef] [PubMed]
- Bibi, S.; Wang, L.; Li, X.; Zhou, J.; Chen, D.; Yao, T. Climatic and Associated Cryospheric, Biospheric, and Hydrological Changes on the Tibetan Plateau: A Review. Int. J. Climatol. 2018, 38, e1–e17. [Google Scholar] [CrossRef][Green Version]
- Yao, T.D.; Wu, G.J.; Xu, B.Q.; Wang, W.C.; Gao, J.; An, B.S. Asian Water Tower Change and Its Impacts. Bull. Chin. Acad. Sci. 2019, 34, 1203–1209. [Google Scholar] [CrossRef]
- Sun, H.L.; Zheng, D.; Yao, T.D.; Zhang, Y. Protection and construction of the national ecological security shelter zone on Tibetan Plateau. Acta Geogr. Sin. 2012, 67, 3–12. [Google Scholar]
- Qiu, J. China: The Third Pole. Nature 2008, 454, 393–396. [Google Scholar] [CrossRef][Green Version]
- Krauss, G.-J.; Solé, M.; Krauss, G.; Schlosser, D.; Wesenberg, D.; Bärlocher, F. Fungi in Freshwaters: Ecology, Physiology and Biochemical Potential. FEMS Microbiol. Rev. 2011, 35, 620–651. [Google Scholar] [CrossRef]
- Sridhar, K.R.; Karamchand, K.S.; Seena, S. Fungal Assemblage and Leaf Litter Decomposition in Riparian Tree Holes and in a Coastal Stream of the South-West India. Mycol. Int. J. Fungal Biol. 2013, 4, 118–124. [Google Scholar] [CrossRef][Green Version]
- Tsui, C.K.M.; Baschien, C.; Goh, T.-K. Biology and Ecology of Freshwater Fungi. In Biology of Microfungi. Fungal Biology; Springer: Cham, Switzerland, 2016; pp. 285–313. [Google Scholar] [CrossRef]
- Wurzbacher, C.; Rösel, S.; Rychła, A.; Grossart, H.-P. Importance of Saprotrophic Freshwater Fungi for Pollen Degradation. PLoS ONE 2014, 9, e94643. [Google Scholar] [CrossRef] [PubMed][Green Version]
- De Souza, L.M.D.; Ogaki, M.B.; Câmara, P.E.A.S.; Pinto, O.H.B.; Convey, P.; Carvalho-Silva, M.; Rosa, C.A.; Rosa, L.H. Assessment of Fungal Diversity Present in Lakes of Maritime Antarctica Using DNA Metabarcoding: A Temporal Microcosm Experiment. Extremophiles 2021, 25, 77–84. [Google Scholar] [CrossRef]
- Calabon, M.S.; Hyde, K.D.; Jones, E.B.G.; Luo, Z.L.; Dong, W.; Hurdeal, V.G.; Gentekaki, E.; Rossi, W.; Leonardi, M.; Thiyagaraja, V.; et al. Freshwater Fungal Numbers. Fungal Divers. 2022, 114, 3–235. [Google Scholar] [CrossRef]
- Dong, W.; Wang, B.; Hyde, K.D.; McKenzie, E.H.C.; Raja, H.A.; Tanaka, K.; Abdel-Wahab, M.A.; Abdel-Aziz, F.A.; Doilom, M.; Phookamsak, R.; et al. Freshwater Dothideomycetes. Fungal Divers. 2020, 105, 319–575. [Google Scholar] [CrossRef]
- Hongsanan, S.; Hyde, K.D.; Phookamsak, R.; Wanasinghe, D.N.; McKenzie, E.H.C.; Sarma, V.V.; Boonmee, S.; Lücking, R.; Bhat, D.J.; Liu, N.G.; et al. Refined Families of Dothideomycetes: Dothideomycetidae and Pleosporomycetidae. Mycosphere 2020, 11, 1553–2107. [Google Scholar] [CrossRef]
- Hyde, K.D.; Norphanphoun, C.; Maharachchikumbura, S.S.N.; Bhat, D.J.; Jones, E.B.G.; Bundhun, D.; Chen, Y.J.; Bao, D.F.; Boonmee, S.; Calabon, M.S.; et al. Refined Families of Sordariomycetes. Mycosphere 2020, 11, 305–1059. [Google Scholar] [CrossRef]
- Wijayawardene, N.; Hyde, K.; Dai, D.; Sánchez-García, M.; Goto, B.; Saxena, R.; Erdoğdu, M.; Selçuk, F.; Rajeshkumar, K.; Aptroot, A.; et al. Outline of Fungi and Fungus-like Taxa—2021. Mycosphere 2022, 13, 53–453. [Google Scholar] [CrossRef]
- Yang, E.F.; Tibpromma, S.; Karunarathna, S.C.; Phookamsak, R.; Xu, J.C.; Zhao, Z.X.; Karunanayake, C.; Promputtha, I. Taxonomy and Phylogeny of Novel and Extant Taxa in Pleosporales Associated with Mangifera indica from Yunnan, China (Series I). J. Fungi 2022, 8, 152. [Google Scholar] [CrossRef]
- Tanaka, K.; Hirayama, K.; Yonezawa, H.; Sato, G.; Toriyabe, A.; Kudo, H.; Hashimoto, A.; Matsumura, M.; Harada, Y.; Kurihara, Y.; et al. Revision of the Massarineae (Pleosporales, Dothideomycetes). Stud. Mycol. 2015, 82, 75–136. [Google Scholar] [CrossRef][Green Version]
- Xie, N.; Phookamsak, R.; Jiang, H.; Zeng, Y.-J.; Zhang, H.; Xu, F.; Lumyong, S.; Xu, J.; Hongsanan, S. Morpho-Molecular Characterization of Five Novel Taxa in Parabambusicolaceae (Massarineae, Pleosporales) from Yunnan, China. J. Fungi 2022, 8, 108. [Google Scholar] [CrossRef] [PubMed]
- Hyde, K.D.; Dong, Y.; Phookamsak, R.; Jeewon, R.; Bhat, D.J.; Jones, E.B.G.; Liu, N.-G.; Abeywickrama, P.D.; Mapook, A.; Wei, D.; et al. Fungal Diversity Notes 1151–1276: Taxonomic and Phylogenetic Contributions on Genera and Species of Fungal Taxa. Fungal Divers. 2020, 100, 5–277. [Google Scholar] [CrossRef][Green Version]
- Liu, J.K.; Hyde, K.D.; Jones, E.B.G.; Ariyawansa, H.A.; Bhat, D.J.; Boonmee, S.; Maharachchikumbura, S.S.N.; McKenzie, E.H.C.; Phookamsak, R.; Phukhamsakda, C.; et al. Fungal Diversity Notes 1–110: Taxonomic and Phylogenetic Contributions to Fungal Species. Fungal Divers. 2015, 72, 1–197. [Google Scholar] [CrossRef]
- Wanasinghe, D.N.; Phukhamsakda, C.; Hyde, K.D.; Jeewon, R.; Lee, H.B.; Gareth Jones, E.B.; Tibpromma, S.; Tennakoon, D.S.; Dissanayake, A.J.; Jayasiri, S.C.; et al. Fungal Diversity Notes 709–839: Taxonomic and Phylogenetic Contributions to Fungal Taxa with an Emphasis on Fungi on Rosaceae. Fungal Divers. 2018, 89, 1–236. [Google Scholar] [CrossRef]
- Liu, J.K.; Luo, Z.L.; Liu, N.G.; Cheewangkoon, R.; To-Anun, C. Two Novel Species of Paradictyoarthrinium from Decaying Wood. Phytotaxa 2018, 338, 285–293. [Google Scholar] [CrossRef]
- Matsushima, T. Matsushima Mycological Memoirs; Matsushima Fungus Collection: Kobe, Japan, 1996; Volume 9, pp. 1316–1321. [Google Scholar]
- Doilom, M.; Dissanayake, A.J.; Wanasinghe, D.N.; Boonmee, S.; Liu, J.-K.; Bhat, D.J.; Taylor, J.E.; Bahkali, A.; McKenzie, E.H.C.; Hyde, K.D. Microfungi on Tectona Grandis (Teak) in Northern Thailand. Fungal Divers. 2017, 82, 107–182. [Google Scholar] [CrossRef]
- Prabhugaonkar, A.; Bhat, D.J. New record of Megacapitula villosa and Paradictyoarthrinium diffractum from India. Mycosphere 2011, 2, 463–467. [Google Scholar]
- Wijayawardene, N.N.; Hyde, K.D.; Lumbsch, H.T.; Liu, J.K.; Maharachchikumbura, S.S.N.; Ekanayaka, A.H.; Tian, Q.; Phookamsak, R. Outline of Ascomycota: 2017. Fungal Divers. 2018, 88, 167–263. [Google Scholar] [CrossRef]
- Hyde, K.D.; Chaiwan, N.; Norphanphoun, C.; Boonmee, S.; Camporesi, E.; Chethana, K.W.T.; Dayarathne, M.C.; de Silva, N.I.; Dissanayake, A.J.; Ekanayaka, A.H.; et al. Mycosphere Notes 169-224. Mycosphere 2018, 9, 271–430. [Google Scholar] [CrossRef]
- Wanasinghe, D.N.; Ren, G.-C.; Xu, J.-C.; Cheewangkoon, R.; Mortimer, P.E. Insight into the Taxonomic Resolution of the Pleosporalean Species Associated with Dead Woody Litter in Natural Forests from Yunnan, China. J. Fungi 2022, 8, 375. [Google Scholar] [CrossRef]
- Zhang, Y.; Fournier, J.; Phookamsak, R.; Bahkali, A.H.; Hyde, K.D. Halotthiaceae Fam. Nov. (Pleosporales) Accommodates the New Genus Phaeoseptum and Several Other Aquatic Genera. Mycologia 2013, 105, 603–609. [Google Scholar] [CrossRef] [PubMed]
- Dayarathne, M.C.; Jones, E.B.G.; Maharachchikumbura, S.S.N.; Devadatha, B.; Sarma, V.V.; Khongphinitbunjong, K.; Chomnunti, P.; Hyde, K.D. Morpho-Molecular Characterization of Microfungi Associated with Marine Based Habitats. Mycosphere 2020, 11, 1–188. [Google Scholar] [CrossRef]
- Phukhamsakda, C.; McKenzie, E.H.C.; Phillips, A.J.L.; Gareth Jones, E.B.; Jayarama Bhat, D.; Stadler, M.; Bhunjun, C.S.; Wanasinghe, D.N.; Thongbai, B.; Camporesi, E.; et al. Microfungi Associated with Clematis (Ranunculaceae) with an Integrated Approach to Delimiting Species Boundaries. Fungal Divers. 2020, 102, 1–203. [Google Scholar] [CrossRef]
- Liu, N.G.; Hyde, K.D.; Bhat, D.J.; Jumpathong, J.; Liu, J.K. Morphological and Phylogenetic Studies of Pleopunctum gen. Nov. (Phaeoseptaceae, Pleosporales) from China. Mycosphere 2019, 10, 757–775. [Google Scholar] [CrossRef]
- Boonmee, S.; Wanasinghe, D.N.; Calabon, M.S.; Huanraluek, N.; Chandrasiri, S.K.U.; Jones, G.E.B.; Rossi, W.; Leonardi, M.; Singh, S.K.; Rana, S.; et al. Fungal Diversity Notes 1387–1511: Taxonomic and Phylogenetic Contributions on Genera and Species of Fungal Taxa. Fungal Divers. 2021, 111, 1–335. [Google Scholar] [CrossRef] [PubMed]
- Senanayake, I.; Rathnayaka, A.; Marasinghe, D.; Calabon, M.; Gentekaki, E.; Lee, H.; Hurdeal, V.; Pem, D.; Dissanayake, L.; Wijesinghe, S.; et al. Morphological Approaches in Studying Fungi: Collection, Examination, Isolation, Sporulation and Preservation. Mycosphere 2020, 11, 2678–2754. [Google Scholar] [CrossRef]
- Jayasiri, S.C.; Hyde, K.D.; Ariyawansa, H.A.; Bhat, J.; Buyck, B.; Cai, L.; Dai, Y.-C.; Abd-Elsalam, K.A.; Ertz, D.; Hidayat, I.; et al. The Faces of Fungi Database: Fungal Names Linked with Morphology, Phylogeny and Human Impacts. Fungal Divers. 2015, 74, 3–18. [Google Scholar] [CrossRef]
- Vilgalys, R.; Hester, M. Rapid Genetic Identification and Mapping of Enzymatically Amplified Ribosomal DNA from Several Cryptococcus Species. J. Bacteriol. 1990, 172, 4238–4246. [Google Scholar] [CrossRef][Green Version]
- White, T.J.; Bruns, T.; Lee, S.; Taylor, J. Amplification and Direct Sequencing of Fungal Ribosomal RNA Genes for Phylogenetics. PCR Protoc. A Guide Methods Appl. 1990, 18, 315–322. [Google Scholar]
- Katoh, K.; Standley, D.M. A Simple Method to Control Over-Alignment in the MAFFT Multiple Sequence Alignment Program. Bioinformatics 2016, 32, 1933–1942. [Google Scholar] [CrossRef][Green Version]
- Capella-Gutierrez, S.; Silla-Martinez, J.M.; Gabaldon, T. TrimAl: A Tool for Automated Alignment Trimming in Large-Scale Phylogenetic Analyses. Bioinformatics 2009, 25, 1972–1973. [Google Scholar] [CrossRef] [PubMed][Green Version]
- Vaidya, G.; Lohman, D.J.; Meier, R. SequenceMatrix: Concatenation Software for the Fast Assembly of Multi-Gene Datasets with Character Set and Codon Information. Cladistics 2011, 27, 171–180. [Google Scholar] [CrossRef] [PubMed]
- Stamatakis, A. RAxML Version 8: A Tool for Phylogenetic Analysis and Post-Analysis of Large Phylogenies. Bioinformatics 2014, 30, 1312–1313. [Google Scholar] [CrossRef][Green Version]
- Miller, M.A.; Pfeiffer, W.; Schwartz, T. Creating the CIPRES Science Gateway for Inference of Large Phylogenetic Trees. In Proceedings of the 2010 Gateway Computing Environments Workshop (GCE), New Orleans, LA, USA, 14 November 2010; pp. 1–8. [Google Scholar]
- Nylander, J.A.A. MrModeltest v2, Program Distributed by the Author Evolutionary Biology Centre; Uppsala University: Uppsala, Sweden, 2004. [Google Scholar]
- Ronquist, F.; Teslenko, M.; van der Mark, P.; Ayres, D.L.; Darling, A.; Höhna, S.; Larget, B.; Liu, L.; Suchard, M.A.; Huelsenbeck, J.P. MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice across a Large Model Space. Syst. Biol. 2012, 61, 539–542. [Google Scholar] [CrossRef] [PubMed][Green Version]
- Rambaut, A. FigTree v1. 4; University of Edinburgh: Edinburgh, UK, 2012. [Google Scholar]
- Chethana, K.W.T.; Niranjan, M.; Dong, W.; Samarakoon, M.C.; Bao, D.F.; Calabon, M.S.; Chaiwan, N.; Chuankid, B.; Dayarathne, M.C.; de Silva, N.I.; et al. AJOM New Records and Collections of Fungi: 101–150. Asian J. Mycol. 2021, 4, 113–260. [Google Scholar] [CrossRef]
- Réblová, M. Molecular Systematics of Ceratostomella Sensu Lato and Morphologically Similar Fungi. Mycologia 2006, 98, 68–93. [Google Scholar] [CrossRef]
- Suetrong, S.; Schoch, C.L.; Spatafora, J.W.; Kohlmeyer, J.; Volkmann-Kohlmeyer, B.; Sakayaroj, J.; Phongpaichit, S.; Tanaka, K.; Hirayama, K.; Jones, E.B.G. Molecular Systematics of the Marine Dothideomycetes. Stud. Mycol. 2009, 64, 155–173. [Google Scholar] [CrossRef]
- Thambugala, K.M.; Hyde, K.D.; Tanaka, K.; Tian, Q.; Wanasinghe, D.N.; Ariyawansa, H.A.; Jayasiri, S.C.; Boonmee, S.; Camporesi, E.; Hashimoto, A.; et al. Towards a Natural Classification and Backbone Tree for Lophiostomataceae, Floricolaceae, and Amorosiaceae Fam. Nov. Fungal Divers. 2015, 74, 199–266. [Google Scholar] [CrossRef]
- Yasanthika, E.; Dissanayake, L.S.; Wanasinghe, D.N.; Karunarathna, S.C.; Mortimer, P.E.; Samarakoon, B.C.; Monkai, J.; Hyde, K.D. Lonicericola fuyuanensis (Parabambusicolaceae) a new terrestrial pleosporalean ascomycete from Yunnan Province, China. Phytotaxa 2020, 446, 103–113. [Google Scholar] [CrossRef]
- Phookamsak, R.; Hyde, K.D.; Jeewon, R.; Bhat, D.J.; Jones, E.B.G.; Maharachchikumbura, S.S.N.; Raspé, O.; Karunarathna, S.C.; Wanasinghe, D.N.; Hongsanan, S.; et al. Fungal Diversity Notes 929–1035: Taxonomic and Phylogenetic Contributions on Genera and Species of Fungi. Fungal Divers. 2019, 95, 1–273. [Google Scholar] [CrossRef][Green Version]
- Li, G.J.; Hyde, K.D.; Zhao, R.L.; Hongsanan, S.; Abdel-Aziz, F.A.; Abdel-Wahab, M.A.; Alvarado, P.; Alves-Silva, G.; Ammirati, J.F.; Ariyawansa, H.A.; et al. Fungal Diversity Notes 253–366: Taxonomic and Phylogenetic Contributions to Fungal Taxa. Fungal Divers. 2016, 78, 1–237. [Google Scholar] [CrossRef]
- Phukhamsakda, C.; Bhat, D.J.; Hongsanan, S.; Xu, J.-C.; Stadler, M.; Hyde, K.D. Two Novel Species of Neoaquastroma (Parabambusicolaceae, Pleosporales) with Their Phoma-like Asexual Morphs. MycoKeys 2018, 34, 47–62. [Google Scholar] [CrossRef] [PubMed]
- Samarakoon, M.C.; Wanasinghe, D.N.; Liu, J.K.; Hyde, K.D.; Promputtha, I. The Genus Neoaquastroma Is Widely Distributed; a Taxonomic Novelty, N. Cylindricum sp. nov. (Parabambusicolaceae, Pleosporales) from Guizhou, China. Asian J. Mycol. 2019, 2, 235–244. [Google Scholar] [CrossRef]
- Wanasinghe, D.N.; Hyde, K.D.; Konta, S.; To-Anun, C.; Jones, E.G. Saprobic Dothideomycetes in Thailand: Neoaquastroma gen. nov. (Parabambusicolaceae) introduced based on morphological and molecular data. Phytotaxa 2017, 302, 133–144. [Google Scholar] [CrossRef]
- Wanasinghe, D.N.; Mortimer, P.E.; Senwanna, C.; Cheewangkoon, R. Saprobic Dothideomycetes in Thailand: Phaeoseptum hydei sp. nov., a new terrestrial ascomycete in Phaeoseptaceae. Phytotaxa 2020, 449, 149–163. [Google Scholar] [CrossRef]
- Phukhamsakda, C.; Jeewon, R.; McKenzie, E.H.C.; Xu, J.C. Morphology and phylogeny of Phaeoseptum mali sp. nov. (Phaeoseptaceae, Pleosporales) on bark of Malus halliana. Asian J. Mycol. 2019, 2, 118–128. [Google Scholar] [CrossRef]
- Ariyawansa, H.A.; Hyde, K.D.; Jayasiri, S.C.; Buyck, B.; Chethana, K.W.T.; Dai, D.Q.; Dai, Y.C.; Daranagama, D.A.; Jayawardena, R.S.; Lücking, R.; et al. Fungal Diversity Notes 111–252—Taxonomic and Phylogenetic Contributions to Fungal Taxa. Fungal Divers. 2015, 75, 27–274. [Google Scholar] [CrossRef]
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Xu, R.-J.; Zhu, Y.-A.; Liu, N.-G.; Boonmee, S.; Zhou, D.-Q.; Zhao, Q. Taxonomy and Phylogeny of Hyphomycetous Muriform Conidial Taxa from the Tibetan Plateau, China. J. Fungi 2023, 9, 560. https://doi.org/10.3390/jof9050560
Xu R-J, Zhu Y-A, Liu N-G, Boonmee S, Zhou D-Q, Zhao Q. Taxonomy and Phylogeny of Hyphomycetous Muriform Conidial Taxa from the Tibetan Plateau, China. Journal of Fungi. 2023; 9(5):560. https://doi.org/10.3390/jof9050560
Chicago/Turabian StyleXu, Rong-Ju, Ying-An Zhu, Ning-Guo Liu, Saranyaphat Boonmee, De-Qun Zhou, and Qi Zhao. 2023. "Taxonomy and Phylogeny of Hyphomycetous Muriform Conidial Taxa from the Tibetan Plateau, China" Journal of Fungi 9, no. 5: 560. https://doi.org/10.3390/jof9050560
APA StyleXu, R.-J., Zhu, Y.-A., Liu, N.-G., Boonmee, S., Zhou, D.-Q., & Zhao, Q. (2023). Taxonomy and Phylogeny of Hyphomycetous Muriform Conidial Taxa from the Tibetan Plateau, China. Journal of Fungi, 9(5), 560. https://doi.org/10.3390/jof9050560