Cascaded Deep Learning-Based Model for Classification and Segmentation of Plaques from Carotid Ultrasound Images
Abstract
1. Introduction
2. Materials and Methods
2.1. Image Acquisition and Preprocessing
2.2. Network Architecture
2.3. Loss Function
2.4. Evaluation and Statistical Analyses
3. Results
3.1. Classification
- NoMask-ResNet: a baseline ResNet without using any masks in average pooling.
- Masked-ResNet-NDS: ResNet with ground truth masks used in average pooling in the training stage. In the testing stage, the data passes through the network twice, as described in Section 2.2. In this model, the CAM was not supervised by the Dice loss in the training stage.
- Masked-ResNet-DS: same as Masked-ResNet-NDS, except that the CAM was supervised by the Dice loss in the training stage.
3.2. Segmentation
3.3. Performance in Challenging Cases
4. Discussion
5. Conclusions
Author Contributions
Funding
Institutional Review Board Statement
Informed Consent Statement
Data Availability Statement
Conflicts of Interest
References
- Feigin, V.L.; Abate, M.D.; Abate, Y.H.; Abd ElHafeez, S.; Abd-Allah, F.; Abdelalim, A.; Abdelkader, A.; Abdelmasseh, M.; Abd-Elsalam, S.; Abdi, P.; et al. Global, regional, and national burden of stroke and its risk factors, 1990–2021: A systematic analysis for the Global Burden of Disease Study 2021. Lancet Neurol. 2024, 23, 973–1003. [Google Scholar] [CrossRef]
- Roth, G.A.; Mensah, G.A.; Johnson, C.O.; Addolorato, G.; Ammirati, E.; Baddour, L.M.; Barengo, N.C.; Beaton, A.Z.; Benjamin, E.J.; Benziger, C.P.; et al. Global burden of cardiovascular diseases and risk factors, 1990–2019: Update from the GBD 2019 study. J. Am. Coll. Cardiol. 2020, 76, 2982–3021. [Google Scholar] [CrossRef]
- Commerford, P.J. The vulnerable atherosclerotic plaque: Understanding, identification, and modification. Cardiovasc. Drugs Ther. 1999, 13, 363. [Google Scholar] [CrossRef]
- Spence, J.D.; Eliasziw, M.; DiCicco, M.; Hackam, D.G.; Galil, R.; Lohmann, T. Carotid plaque area: A tool for targeting and evaluating vascular preventive therapy. Stroke 2002, 33, 2916–2922. [Google Scholar] [CrossRef]
- van Engelen, A.; Wannarong, T.; Parraga, G.; Niessen, W.J.; Fenster, A.; Spence, J.D.; de Bruijne, M. Three-dimensional carotid ultrasound plaque texture predicts vascular events. Stroke 2014, 45, 2695–2701. [Google Scholar] [CrossRef]
- Mathiesen, E.B.; Bønaa, K.H.; Joakimsen, O. Echolucent plaques are associated with high risk of ischemic cerebrovascular events in carotid stenosis: The Tromsø study. Circulation 2001, 103, 2171–2175. [Google Scholar] [CrossRef]
- European Carotid Plaque Study Group. Carotid artery plaque composition—Relationship to clinical presentation and ultrasound B-mode imaging. Eur. J. Vasc. Endovasc. Surg. 1995, 10, 23–30, Reprint in Eur. J. Vasc. Endovasc. Surg. 2011, 42, S32–S38. [Google Scholar] [CrossRef]
- Nordestgaard, B.G.; Grønholdt, M.-L.M.; Sillesen, H. Echolucent rupture-prone plaques. Curr. Opin. Lipidol. 2003, 14, 505–512. [Google Scholar] [CrossRef]
- Grønholdt, M.-L.M.; Wiebe, B.M.; Laursen, H.; Nielsen, T.G.; Schroeder, T.V.; Sillesen, H. Lipid-rich carotid artery plaques appear echolucent on ultrasound B-mode images and may be associated with intraplaque haemorrhage. Eur. J. Vasc. Endovasc. Surg. 1997, 14, 439–445. [Google Scholar] [CrossRef] [PubMed]
- Ratliff, D.A.; Gallagher, P.J.; Hames, T.K.; Humphries, K.N.; Webster, J.H.H.; Chant, A.D.B. Characterisation of carotid artery disease: Comparison of duplex scanning with histology. Ultrasound Med. Biol. 1985, 11, 835–840. [Google Scholar] [CrossRef] [PubMed]
- Feeley, T.M.; Leen, E.J.; Colgan, M.-P.; Moore, D.J.; Hourihane, D.O.B.; Shanik, G.D. Histologic characteristics of carotid artery plaque. J. Vasc. Surg. 1991, 13, 719–724. [Google Scholar] [CrossRef] [PubMed]
- Honda, O.; Sugiyama, S.; Kugiyama, K.; Fukushima, H.; Nakamura, S.; Koide, S.; Kojima, S.; Hirai, N.; Kawano, H.; Soejima, H.; et al. Echolucent carotid plaques predict future coronary events in patients with coronary artery disease. J. Am. Coll. Cardiol. 2004, 43, 1177–1184. [Google Scholar] [CrossRef] [PubMed]
- Nakamura, T.; Tsutsumi, Y.; Shimizu, Y.; Uchiyama, S. Ulcerated carotid plaques with ultrasonic echolucency are causatively associated with thromboembolic cerebrovascular events. J. Stroke Cerebrovasc. Dis. 2013, 22, 93–99. [Google Scholar] [CrossRef]
- Nakamura, T.; Kitta, Y.; Uematsu, M.; Sugamata, W.; Hirano, M.; Fujioka, D.; Sano, K.; Saito, Y.; Kawabata, K.; Obata, J.; et al. Ultrasound assessment of brachial endothelial vasomotor function in addition to carotid plaque echolucency for predicting cardiovascular events in patients with coronary artery disease. Int. J. Cardiol. 2013, 167, 555–560. [Google Scholar] [CrossRef]
- van Swijndregt, A.D.M.; Elbers, H.R.J.; Moll, F.L.; de Letter, J.; Ackerstaff, R.G.A. Ultrasonographic characterization of carotid plaques. Ultrasound Med. Biol. 1998, 24, 489–493. [Google Scholar] [CrossRef] [PubMed]
- Mathiesen, E.B.; Johnsen, S.H.; Wilsgaard, T.; Bønaa, K.H.; Løchen, M.-L.; Njølstad, I. Carotid plaque area and intima-media thickness in prediction of first-ever ischemic stroke: A 10-year follow-up of 6584 men and women: The Tromsø Study. Stroke 2011, 42, 972–978. [Google Scholar] [CrossRef] [PubMed]
- Lekadir, K.; Galimzianova, A.; Betriu, A.; del Mar Vila, M.; Igual, L.; Rubin, D.L.; Fernández, E.; Radeva, P.; Napel, S. A convolutional neural network for automatic characterization of plaque composition in carotid ultrasound. IEEE J. Biomed. Health Inform. 2016, 21, 48–55. [Google Scholar] [CrossRef]
- Ma, W.; Cheng, X.; Xu, X.; Wang, F.; Zhou, R.; Fenster, A.; Ding, M. Multilevel Strip Pooling-Based Convolutional Neural Network for the Classification of Carotid Plaque Echogenicity. Comput. Math. Methods Med. 2021, 2021, 3425893. [Google Scholar] [CrossRef]
- Saba, L.; Sanagala, S.S.; Gupta, S.K.; Koppula, V.K.; Johri, A.M.; Sharma, A.M.; Kolluri, R.; Bhatt, D.L.; Nicolaides, A.; Suri, J.S. Ultrasound-based internal carotid artery plaque characterization using deep learning paradigm on a supercomputer: A cardiovascular disease/stroke risk assessment system. Int. J. Cardiovasc. Imaging 2021, 37, 1511–1528. [Google Scholar] [CrossRef]
- Zhou, R.; Azarpazhooh, M.R.; Spence, J.D.; Hashemi, S.; Ma, W.; Cheng, X.; Gan, H.; Ding, M.; Fenster, A. Deep learning-based carotid plaque segmentation from B-mode ultrasound images. Ultrasound Med. Biol. 2021, 47, 2723–2733. [Google Scholar] [CrossRef]
- Zhou, R.; Guo, F.; Azarpazhooh, M.R.; Hashemi, S.; Cheng, X.; Spence, J.D.; Ding, M.; Fenster, A. Deep learning-based measurement of total plaque area in B-mode ultrasound images. IEEE J. Biomed. Health Inform. 2021, 25, 2967–2977. [Google Scholar] [CrossRef]
- Yu, L.; Chen, H.; Dou, Q.; Qin, J.; Heng, P.-A. Automated melanoma recognition in dermoscopy images via very deep residual networks. IEEE Trans. Med. Imaging 2016, 36, 994–1004. [Google Scholar] [CrossRef]
- Xie, Y.; Zhang, J.; Xia, Y.; Shen, C. A mutual bootstrapping model for automated skin lesion segmentation and classification. IEEE Trans. Med. Imaging 2020, 39, 2482–2493. [Google Scholar] [CrossRef]
- Li, K.; Wu, Z.; Peng, K.-C.; Ernst, J.; Fu, Y. Tell me where to look: Guided attention inference network. In 2018 IEEE Conference on Computer Vision and Pattern Recognition (CVPR), Salt Lake City, UT, USA, 18–23 June 2018; IEEE: Piscataway, NJ, USA, 2018; pp. 9215–9223. [Google Scholar]
- He, X.; Wang, Y.; Zhao, S.; Chen, X. Joint segmentation and classification of skin lesions via a multi-task learning convolutional neural network. Expert Syst. Appl. 2023, 230, 120174. [Google Scholar] [CrossRef]
- Zhou, B.; Khosla, A.; Lapedriza, A.; Oliva, A.; Torralba, A. Learning deep features for discriminative localization. In 2016 IEEE Conference on Computer Vision and Pattern Recognition (CVPR), Las Vegas, NV, USA, 27–30 June 2016; IEEE: Piscataway, NJ, USA, 2016; pp. 2921–2929. [Google Scholar]
- Ma, J.; He, Y.; Li, F.; Han, L.; You, C.; Wang, B. Segment Anything in Medical Images. Nat. Commun. 2024, 15, 654. [Google Scholar] [CrossRef] [PubMed]
- Gan, H.; Zhou, R.; Ou, Y.; Wang, F.; Cheng, X.; Fu, L.; Fenster, A. A region and category confidence-based multi-task network for carotid ultrasound image segmentation and classification. IEEE J. Biomed. Health Inform. 2025, 29, 9158–9169. [Google Scholar] [CrossRef] [PubMed]
- Ronneberger, O.; Fischer, P.; Brox, T. U-net: Convolutional networks for biomedical image segmentation. In International Conference on Medical Image Computing and Computer-Assisted Intervention (MICCAI), Munich, Germany, 5–9 October 2015; Springer: Cham, Switzerland, 2015; pp. 234–241. [Google Scholar]
- Isensee, F.; Jaeger, P.F.; Kohl, S.A.A.; Petersen, J.; Maier-Hein, K.H. nnU-Net: A self-configuring method for deep learning-based biomedical image segmentation. Nat. Methods 2021, 18, 203–211. [Google Scholar] [CrossRef]
- Chiu, B.; Krasinski, A.; Spence, J.D.; Parraga, G.; Fenster, A. Three-dimensional carotid ultrasound segmentation variability dependence on signal difference and boundary orientation. Ultrasound Med. Biol. 2010, 36, 95–110. [Google Scholar] [CrossRef]
- Chiu, B.; Ukwatta, E.; Shavakh, S.; Fenster, A. Quantification and visualization of carotid segmentation accuracy and precision using a 2D standardized carotid map. Phys. Med. Biol. 2013, 58, 3671. [Google Scholar] [CrossRef]
- Skandha, S.S.; Gupta, S.K.; Saba, L.; Koppula, V.K.; Johri, A.M.; Khanna, N.N.; Mavrogeni, S.; Laird, J.R.; Pareek, G.; Miner, M.; et al. 3-D optimized classification and characterization artificial intelligence paradigm for cardiovascular/stroke risk stratification using carotid ultrasound-based delineated plaque: Atheromatic™ 2.0. Comput. Biol. Med. 2020, 125, 103958. [Google Scholar] [CrossRef]
- Spence, J.D.; Eliasziw, M.; DiCicco, M.; Hackam, D.G.; Galil, R.; Lohmann, T. Treating arteries instead of risk factors: A paradigm change in management of atherosclerosis. Stroke 2010, 41, 1193–1199. [Google Scholar] [CrossRef] [PubMed]
- Spence, J.D.; Rundek, T. Toward clinical applications of carotid ultrasound: Intima-media thickness, plaque area, and three-dimensional phenotypes. In Ultrasound and carotid bifurcation atherosclerosis; Springer: London, UK, 2011; pp. 431–448. [Google Scholar]
- Chen, Z.; Jiang, M.; Chiu, B. Unsupervised shape-and-texture-based generative adversarial tuning of pre-trained networks for carotid segmentation from 3D ultrasound images. Med. Phys. 2024, 51, 7240–7256. [Google Scholar] [CrossRef] [PubMed]
- Kou, W.; Rey, C.; Marshall, H.; Chiu, B. Interactive Cascaded Network for Prostate Cancer Segmentation from Multimodality MRI with Automated Quality Assessment. Bioengineering 2024, 11, 796. [Google Scholar] [CrossRef] [PubMed]




| Types of Plaques | Images | Training Set | Validation Set | Testing Set |
|---|---|---|---|---|
| Echogenic (EG) | 335 | 234 | 32 | 69 |
| Intermediate (IM) | 405 | 275 | 40 | 90 |
| Echolucent (EL) | 723 | 516 | 72 | 135 |
| Total | 1463 | 1025 | 144 | 294 |
| Model | Classification Accuracy (%) |
|---|---|
| ResNet18 | 87.0 |
| ResNet34 | 86.8 |
| ResNet50 | 85.4 |
| ResNet101 | 85.2 |
| Metrics | Model | EG (%) | IM (%) | EL (%) | Mean (%) |
|---|---|---|---|---|---|
| SEN | VGG16 [18] | 70.8–84.6 | 63.4–73.3 | 89.0–96.0 | 75.2–82.8 |
| SPP-VGG [18] | 91.7–98.5 | 76.5–91.1 | 87.4–96.0 | 86.1–93.0 | |
| MSP-VGG [18] | 92.5–98.6 | 81.8–91.1 | 89.6–96.0 | 90.9–94.1 | |
| MB-DCNN [23] | 18.8 | 28.9 | 65.9 | 37.9 | |
| NoMask-ResNet18 | 72.5 | 67.8 | 94.1 | 78.1 | |
| Masked-ResNet18-NDS | 92.8 | 93.3 | 98.5 | 94.9 | |
| Masked-ResNet18-DS | 94.2 | 96.7 | 98.5 | 96.5 | |
| SPE | VGG16 [18] | 96.5–99.5 | 84.8–92.9 | 77.3–83.1 | 86.9–90.8 |
| SPP-VGG [18] | 97.6–97.9 | 92.5–97.2 | 86.5–94.9 | 92.4–96.1 | |
| MSP-VGG [18] | 98.1–99.5 | 93.8–96.3 | 90.7–95.7 | 95.0–96.6 | |
| MB-DCNN [23] | 79.6 | 79.4 | 50.9 | 69.9 | |
| NoMask-ResNet18 | 98.2 | 90.7 | 79.2 | 89.4 | |
| Masked-ResNet18-NDS | 99.1 | 97.1 | 96.9 | 97.7 | |
| Masked-ResNet18-DS | 100.0 | 97.2 | 98.1 | 98.4 | |
| PRE | VGG16 [18] | 89.1–98.0 | 61.9–82.5 | 80.6–86.0 | 80.2–85.4 |
| SPP-VGG [18] | 92.5–94.3 | 80.8–89.3 | 86.4–94.7 | 87.1–92.3 | |
| MSP-VGG [18] | 94.1–98.6 | 84.9–88.7 | 90.4–95.9 | 91.3–92.9 | |
| MB-DCNN [23] | 22.0 | 38.2 | 53.3 | 37.9 | |
| NoMask-ResNet18 | 92.6 | 76.3 | 79.4 | 82.8 | |
| Masked-ResNet18-NDS | 97.0 | 93.3 | 96.4 | 95.6 | |
| Masked-ResNet18-DS | 100.0 | 93.5 | 97.8 | 97.1 | |
| F1 | VGG16 [18] | 81.6–88.7 | 62.7–77.7 | 84.6–89.2 | 77.6–83.9 |
| SPP-VGG [18] | 93.0–95.5 | 78.5–88.2 | 88.2–94.0 | 86.5–92.6 | |
| MSP-VGG [18] | 93.9–96.5 | 85.1–89.7 | 91.6–94.3 | 91.3–93.5 | |
| MB-DCNN [23] | 20.3 | 32.9 | 58.9 | 37.4 | |
| RCCM-Net [28] | - | - | - | 85.4 | |
| NoMask-ResNet18 | 81.3 | 71.8 | 86.1 | 79.7 | |
| Masked-ResNet18-NDS | 94.9 | 93.3 | 97.4 | 95.2 | |
| Masked-ResNet18-DS | 97.0 | 95.1 | 98.1 | 96.7 | |
| ACC | MSP-VGG [18] | 95.9 | 87.6 | 92.7 | 92.1 |
| MB-DCNN [23] | 18.8 | 28.9 | 65.9 | 37.9 | |
| RCCM-Net [28] | 91.1 | 92.3 | 71.7 | 85.0 | |
| NoMask-ResNet18 | 72.5 | 67.8 | 94.1 | 78.1 | |
| Masked-ResNet18-NDS | 92.8 | 93.3 | 98.5 | 94.9 | |
| Masked-ResNet18-DS | 94.2 | 96.7 | 98.5 | 96.5 |
| Metrics | Model | EG | IM | EL | Overall |
|---|---|---|---|---|---|
| DSC | UNet [29] | 81.8 ± 7.3 | 80.1 ± 9.8 | 80.6 ± 8.5 | 80.7 ± 8.7 |
| nnUNet [30] | 81.9 ± 7.7 | 83.6 ± 7.4 | 83.1 ± 6.0 | 83.0 ± 6.9 | |
| MB-DCNN (Coarse) [23] | 79.8 ± 9.0 | 71.7 ± 10.7 | 68.1 ± 10.2 | 72.2 ± 10.1 | |
| MB-DCNN (Fine) [23] | 73.1 ± 9.8 | 73.5 ± 9.6 | 68.1 ± 7.5 | 70.9 ± 9.1 | |
| RCCM-Net [28] | - | - | - | 84.9 ± 0.4 | |
| Base-MedSAM | 85.2 ± 6.2 | 82.9 ± 9.5 | 85.1 ± 6.2 | 84.4 ± 7.4 | |
| CAM-MedSAM | 87.5 ± 4.2 | 85.4 ± 6.9 | 87.1 ± 5.4 | 86.6 ± 5.7 | |
| HD | UNet [29] | 0.78 ± 0.56 | 1.92 ± 1.51 | 1.59 ± 1.36 | 1.50 ± 1.34 |
| nnUNet [30] | 0.81 ± 0.80 | 1.63 ± 1.12 | 1.48 ± 1.20 | 1.37 ± 1.13 | |
| MB-DCNN (Coarse) [23] | 0.82 ± 0.51 | 2.80 ± 1.88 | 2.24 ± 1.73 | 2.08 ± 1.75 | |
| MB-DCNN (Fine) [23] | 1.16 ± 0.55 | 2.41 ± 1.65 | 2.28 ± 1.37 | 2.06 ± 1.42 | |
| RCCM-Net [28] | - | - | - | 0.75 ± 0.05 | |
| Base-MedSAM | 0.66 ± 0.56 | 1.42 ± 1.36 | 1.21 ± 1.02 | 1.15 ± 1.10 | |
| CAM-MedSAM | 0.46 ± 0.19 | 0.86 ± 0.49 | 0.79 ± 0.52 | 0.73 ± 0.48 | |
| ASSD | UNet [29] | 0.22 ± 0.12 | 0.32 ± 0.21 | 0.25 ± 0.18 | 0.27 ± 0.18 |
| nnUNet [30] | 0.21 ± 0.18 | 0.25 ± 0.15 | 0.20 ± 0.10 | 0.22 ± 0.14 | |
| MB-DCNN (Coarse) [23] | 0.26 ± 0.16 | 0.55 ± 0.33 | 0.47 ± 0.27 | 0.45 ± 0.29 | |
| MB-DCNN (Fine) [23] | 0.39 ± 0.15 | 0.53 ± 0.33 | 0.50 ± 0.19 | 0.49 ± 0.24 | |
| RCCM-Net [28] | - | - | - | 0.27 ± 0.004 | |
| Base-MedSAM | 0.17 ± 0.09 | 0.24 ± 0.19 | 0.17 ± 0.10 | 0.19 ± 0.14 | |
| CAM-MedSAM | 0.13 ± 0.05 | 0.16 ± 0.06 | 0.13 ± 0.05 | 0.14 ± 0.06 |
| Models | Plaque | |||
|---|---|---|---|---|
| A | B | C | D | |
| MB-DCNN [23] | IM | EL | EL | EL |
| NoMask-ResNet18 | EL | EG | IM | EL |
| Masked-ResNet18-NDS | EG | EG | EG | EG |
| Masked-ResNet18-DS | EG | EG | EG | EG |
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Ren, B.-W.; Zhou, R.; Cheng, X.; Ding, M.; Chiu, B. Cascaded Deep Learning-Based Model for Classification and Segmentation of Plaques from Carotid Ultrasound Images. Bioengineering 2026, 13, 190. https://doi.org/10.3390/bioengineering13020190
Ren B-W, Zhou R, Cheng X, Ding M, Chiu B. Cascaded Deep Learning-Based Model for Classification and Segmentation of Plaques from Carotid Ultrasound Images. Bioengineering. 2026; 13(2):190. https://doi.org/10.3390/bioengineering13020190
Chicago/Turabian StyleRen, Bo-Wen, Ran Zhou, Xinyao Cheng, Mingyue Ding, and Bernard Chiu. 2026. "Cascaded Deep Learning-Based Model for Classification and Segmentation of Plaques from Carotid Ultrasound Images" Bioengineering 13, no. 2: 190. https://doi.org/10.3390/bioengineering13020190
APA StyleRen, B.-W., Zhou, R., Cheng, X., Ding, M., & Chiu, B. (2026). Cascaded Deep Learning-Based Model for Classification and Segmentation of Plaques from Carotid Ultrasound Images. Bioengineering, 13(2), 190. https://doi.org/10.3390/bioengineering13020190

